Wall clock time and date at job start Tue Mar 31 2020 22:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 119.99722 * 2 1 4 4 H 1.48503 * 109.47473 * 269.99834 * 3 2 1 5 5 H 1.48501 * 109.47308 * 30.00075 * 3 2 1 6 6 H 1.48507 * 109.47052 * 149.99867 * 3 2 1 7 7 C 1.38798 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99895 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00112 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47439 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99852 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00146 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00122 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.47365 * 34.99621 * 14 13 11 16 16 C 1.50697 * 109.47673 * 154.99624 * 14 13 11 17 17 C 1.38255 * 119.96788 * 39.72227 * 16 14 13 18 18 C 1.38197 * 120.01884 * 179.76887 * 17 16 14 19 19 C 1.38454 * 119.97866 * 0.50515 * 18 17 16 20 20 F 1.35102 * 120.02677 * 179.76839 * 19 18 17 21 21 C 1.38454 * 119.94781 * 359.75383 * 19 18 17 22 22 C 1.38202 * 119.97593 * 359.97438 * 21 19 18 23 23 C 1.53001 * 109.47057 * 275.00114 * 14 13 11 24 24 H 1.08997 * 110.35136 * 300.68739 * 23 14 13 25 25 C 1.54940 * 110.31180 * 62.83211 * 23 14 13 26 26 C 1.55300 * 100.94415 * 155.36050 * 25 23 14 27 27 C 1.54377 * 102.25502 * 325.86750 * 26 25 23 28 28 O 1.43245 * 107.58529 * 21.35358 * 27 26 25 29 29 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46775 * 60.00142 * 10 9 7 31 31 H 1.08998 * 109.47235 * 300.00534 * 10 9 7 32 32 H 0.96992 * 120.00183 * 359.97438 * 13 11 10 33 33 H 1.07994 * 119.98772 * 0.02885 * 17 16 14 34 34 H 1.08003 * 120.00833 * 180.25869 * 18 17 16 35 35 H 1.08001 * 120.01463 * 179.97438 * 21 19 18 36 36 H 1.08001 * 119.98861 * 180.02562 * 22 21 19 37 37 H 1.09007 * 111.12756 * 37.44000 * 25 23 14 38 38 H 1.09003 * 111.16152 * 273.29689 * 25 23 14 39 39 H 1.09006 * 110.85287 * 207.67375 * 26 25 23 40 40 H 1.09007 * 110.84948 * 84.05944 * 26 25 23 41 41 H 1.09000 * 109.83189 * 261.84669 * 27 26 25 42 42 H 1.08997 * 109.83895 * 140.86726 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9874 -5.3027 -0.0036 12 8 0.7911 -5.5023 -0.0038 13 7 2.8442 -6.3431 -0.0039 14 6 2.3305 -7.7151 -0.0050 15 1 1.4149 -7.7598 -0.5949 16 6 3.3604 -8.6367 -0.6057 17 6 4.7004 -8.4571 -0.3163 18 6 5.6453 -9.3047 -0.8627 19 6 5.2508 -10.3273 -1.7085 20 9 6.1742 -11.1535 -2.2470 21 6 3.9091 -10.5028 -2.0019 22 6 2.9653 -9.6576 -1.4498 23 6 2.0332 -8.1496 1.4315 24 1 2.9376 -8.0985 2.0378 25 6 0.9239 -7.2582 2.0444 26 6 0.3507 -8.2070 3.1321 27 6 0.4955 -9.5928 2.4675 28 8 1.4961 -9.4817 1.4485 29 1 -0.4850 0.8400 0.0004 30 1 3.1244 -3.7321 0.8873 31 1 3.1245 -3.7305 -0.8927 32 1 3.8009 -6.1835 -0.0041 33 1 5.0082 -7.6569 0.3403 34 1 6.6917 -9.1668 -0.6332 35 1 3.6002 -11.3000 -2.6619 36 1 1.9186 -9.7946 -1.6782 37 1 0.1658 -7.0083 1.3020 38 1 1.3448 -6.3574 2.4910 39 1 -0.6966 -7.9802 3.3320 40 1 0.9420 -8.1514 4.0461 41 1 -0.4539 -9.8905 2.0224 42 1 0.8041 -10.3287 3.2100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055946141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:17 Heat of formation + Delta-G solvation = -103.528912 kcal Electronic energy + Delta-G solvation = -26645.593959 eV Core-core repulsion = 22631.194638 eV Total energy + Delta-G solvation = -4014.399321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.11949 -40.60461 -38.93019 -38.71596 -35.06002 -32.46905 -32.10485 -31.76572 -31.35182 -29.58064 -28.71880 -25.63114 -25.25694 -23.45834 -22.41762 -21.55344 -21.07953 -20.25294 -18.15801 -17.78895 -17.25140 -16.59355 -16.47542 -16.34168 -15.88292 -15.79939 -15.01502 -14.93751 -14.83545 -14.64900 -14.23362 -13.98603 -13.82241 -13.46743 -13.39423 -13.13889 -12.88416 -12.71103 -12.58426 -12.19263 -11.90286 -11.65491 -11.35210 -11.25604 -11.14941 -11.09394 -11.06326 -10.82901 -10.77366 -9.85943 -9.75909 -9.51279 -9.37189 -9.10837 -9.02402 -8.75685 -8.29452 -6.54658 -6.25836 -3.96583 0.84070 0.97372 2.83815 2.94308 3.19743 3.22557 3.27309 3.33156 3.51655 3.89767 3.99809 4.16590 4.34271 4.43504 4.48173 4.61875 4.83237 4.87715 4.94799 4.97566 5.06460 5.09726 5.13503 5.17234 5.31923 5.49206 5.58163 5.60784 5.64338 5.70714 5.75425 5.81720 5.84528 5.84668 5.95574 6.01680 6.07518 6.19055 6.33768 6.49767 6.60296 6.90845 7.55050 7.56851 8.31171 8.48402 9.19906 10.81516 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.002813 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.588282 B = 9951.958133 C =11607.780238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.508 6.508 13 N -0.730 5.730 14 C 0.191 3.809 15 H 0.105 0.895 16 C -0.090 4.090 17 C -0.087 4.087 18 C -0.151 4.151 19 C 0.095 3.905 20 F -0.142 7.142 21 C -0.151 4.151 22 C -0.064 4.064 23 C 0.077 3.923 24 H 0.069 0.931 25 C -0.150 4.150 26 C -0.158 4.158 27 C 0.053 3.947 28 O -0.375 6.375 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.211 -21.123 1.970 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.170 5.830 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.382 6.382 13 N -0.386 5.386 14 C 0.086 3.914 15 H 0.123 0.877 16 C -0.090 4.090 17 C -0.105 4.105 18 C -0.170 4.170 19 C 0.076 3.924 20 F -0.121 7.121 21 C -0.170 4.170 22 C -0.082 4.082 23 C 0.018 3.982 24 H 0.087 0.913 25 C -0.187 4.187 26 C -0.195 4.195 27 C -0.024 4.024 28 O -0.294 6.294 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.235 0.765 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.121 -21.540 1.824 22.467 hybrid contribution 2.622 1.332 0.151 2.945 sum 8.744 -20.208 1.975 22.107 Atomic orbital electron populations 1.70009 1.05949 1.27504 1.46809 1.24984 0.95024 0.99036 0.94489 0.86174 0.79418 0.81564 0.78388 1.20248 1.20752 1.19686 1.22864 0.94913 0.91649 1.59040 0.90925 1.85368 1.04652 0.96269 1.96731 1.23542 1.06771 0.95158 1.05035 1.20330 0.86562 0.86161 0.74810 1.90665 1.15229 1.85291 1.47011 1.46060 1.10166 1.04378 1.78017 1.19707 0.96394 0.80228 0.95100 0.87677 1.19876 0.93953 0.97215 0.97989 1.20787 0.91946 0.98733 0.99024 1.21074 1.00996 0.95762 0.99119 1.17737 0.86451 0.91221 0.97032 1.91497 1.65530 1.70604 1.84455 1.21133 0.91204 1.01836 1.02790 1.20853 0.99850 0.93110 0.94392 1.23335 0.96975 0.82552 0.95307 0.91308 1.23504 0.98777 0.97863 0.98565 1.23142 1.02712 0.94671 0.99021 1.23102 0.91893 0.97186 0.90177 1.88373 1.55326 1.29306 1.56382 0.92156 0.89185 0.89113 0.76516 0.85105 0.84663 0.84625 0.84617 0.87597 0.90109 0.89891 0.90980 0.91326 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.83 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 10 C -0.15 -2.89 6.16 36.00 0.22 -2.67 16 11 C 0.53 8.91 6.98 -10.99 -0.08 8.83 16 12 O -0.51 -10.08 12.63 5.55 0.07 -10.01 16 13 N -0.73 -8.84 4.99 -54.93 -0.27 -9.12 16 14 C 0.19 2.23 2.22 -69.08 -0.15 2.07 16 15 H 0.11 1.41 7.44 -51.93 -0.39 1.02 16 16 C -0.09 -0.92 4.67 -104.62 -0.49 -1.41 16 17 C -0.09 -0.77 9.06 -39.59 -0.36 -1.13 16 18 C -0.15 -1.35 10.03 -39.52 -0.40 -1.75 16 19 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 20 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 21 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 22 C -0.06 -0.62 9.67 -39.59 -0.38 -1.01 16 23 C 0.08 0.89 3.15 -25.71 -0.08 0.81 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 C -0.15 -1.92 4.85 -24.49 -0.12 -2.04 16 26 C -0.16 -1.62 7.02 -24.79 -0.17 -1.80 16 27 C 0.05 0.53 7.79 37.88 0.30 0.83 16 28 O -0.38 -4.48 10.73 -35.23 -0.38 -4.86 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 31 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 32 H 0.40 3.80 6.85 -40.82 -0.28 3.52 16 33 H 0.13 0.91 6.90 -52.49 -0.36 0.55 16 34 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.19 8.04 -52.49 -0.42 0.77 16 37 H 0.11 1.63 6.12 -51.93 -0.32 1.31 16 38 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -32.50 366.72 -9.25 -41.75 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.53 Total: 3.75 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.20 Total: -12.97 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.46 Total: -33.98 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.31 Total: -14.87 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.50 -9.25 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055946141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.778 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds