Wall clock time and date at job start Tue Mar 31 2020 22:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 119.99722 * 2 1 4 4 H 1.48503 * 109.47473 * 269.99834 * 3 2 1 5 5 H 1.48501 * 109.47308 * 30.00075 * 3 2 1 6 6 H 1.48507 * 109.47052 * 149.99867 * 3 2 1 7 7 C 1.38798 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99895 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00112 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47439 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99852 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00146 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00122 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.47365 * 34.99621 * 14 13 11 16 16 C 1.50697 * 109.47673 * 154.99624 * 14 13 11 17 17 C 1.38255 * 119.96788 * 39.72227 * 16 14 13 18 18 C 1.38197 * 120.01884 * 179.76887 * 17 16 14 19 19 C 1.38454 * 119.97866 * 0.50515 * 18 17 16 20 20 F 1.35102 * 120.02677 * 179.76839 * 19 18 17 21 21 C 1.38454 * 119.94781 * 359.75383 * 19 18 17 22 22 C 1.38202 * 119.97593 * 359.97438 * 21 19 18 23 23 C 1.53001 * 109.47057 * 275.00114 * 14 13 11 24 24 H 1.08997 * 110.35136 * 300.68739 * 23 14 13 25 25 C 1.54940 * 110.31180 * 62.83211 * 23 14 13 26 26 C 1.55300 * 100.94415 * 155.36050 * 25 23 14 27 27 C 1.54377 * 102.25502 * 325.86750 * 26 25 23 28 28 O 1.43245 * 107.58529 * 21.35358 * 27 26 25 29 29 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46775 * 60.00142 * 10 9 7 31 31 H 1.08998 * 109.47235 * 300.00534 * 10 9 7 32 32 H 0.96992 * 120.00183 * 359.97438 * 13 11 10 33 33 H 1.07994 * 119.98772 * 0.02885 * 17 16 14 34 34 H 1.08003 * 120.00833 * 180.25869 * 18 17 16 35 35 H 1.08001 * 120.01463 * 179.97438 * 21 19 18 36 36 H 1.08001 * 119.98861 * 180.02562 * 22 21 19 37 37 H 1.09007 * 111.12756 * 37.44000 * 25 23 14 38 38 H 1.09003 * 111.16152 * 273.29689 * 25 23 14 39 39 H 1.09006 * 110.85287 * 207.67375 * 26 25 23 40 40 H 1.09007 * 110.84948 * 84.05944 * 26 25 23 41 41 H 1.09000 * 109.83189 * 261.84669 * 27 26 25 42 42 H 1.08997 * 109.83895 * 140.86726 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9874 -5.3027 -0.0036 12 8 0.7911 -5.5023 -0.0038 13 7 2.8442 -6.3431 -0.0039 14 6 2.3305 -7.7151 -0.0050 15 1 1.4149 -7.7598 -0.5949 16 6 3.3604 -8.6367 -0.6057 17 6 4.7004 -8.4571 -0.3163 18 6 5.6453 -9.3047 -0.8627 19 6 5.2508 -10.3273 -1.7085 20 9 6.1742 -11.1535 -2.2470 21 6 3.9091 -10.5028 -2.0019 22 6 2.9653 -9.6576 -1.4498 23 6 2.0332 -8.1496 1.4315 24 1 2.9376 -8.0985 2.0378 25 6 0.9239 -7.2582 2.0444 26 6 0.3507 -8.2070 3.1321 27 6 0.4955 -9.5928 2.4675 28 8 1.4961 -9.4817 1.4485 29 1 -0.4850 0.8400 0.0004 30 1 3.1244 -3.7321 0.8873 31 1 3.1245 -3.7305 -0.8927 32 1 3.8009 -6.1835 -0.0041 33 1 5.0082 -7.6569 0.3403 34 1 6.6917 -9.1668 -0.6332 35 1 3.6002 -11.3000 -2.6619 36 1 1.9186 -9.7946 -1.6782 37 1 0.1658 -7.0083 1.3020 38 1 1.3448 -6.3574 2.4910 39 1 -0.6966 -7.9802 3.3320 40 1 0.9420 -8.1514 4.0461 41 1 -0.4539 -9.8905 2.0224 42 1 0.8041 -10.3287 3.2100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055946141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:16 Heat of formation + Delta-G solvation = -123.514029 kcal Electronic energy + Delta-G solvation = -26646.460579 eV Core-core repulsion = 22631.194638 eV Total energy + Delta-G solvation = -4015.265941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.89522 -41.61271 -39.89598 -39.72334 -36.16099 -34.56752 -33.02392 -32.84102 -32.10472 -30.55909 -29.92208 -27.65866 -26.28169 -24.20001 -23.22597 -22.47555 -22.13241 -21.36305 -19.87081 -18.73601 -18.30196 -17.81230 -17.40906 -17.23506 -16.88029 -16.86158 -16.57690 -16.15449 -16.10315 -15.64539 -15.55031 -15.11302 -14.65336 -14.48187 -14.46024 -14.29503 -14.13123 -13.82002 -13.53708 -13.39080 -13.14330 -12.89966 -12.84199 -12.62741 -12.58466 -12.22485 -12.13697 -11.94865 -11.77625 -11.66247 -11.12904 -10.90580 -10.64615 -10.24665 -10.13160 -10.05390 -9.56789 -8.62809 -8.33454 -6.09925 0.07590 0.27290 1.27620 1.42980 1.47407 1.57018 1.60380 2.11326 2.28983 2.57837 2.90494 3.01087 3.26477 3.34303 3.47471 3.58783 3.73025 3.92984 3.93968 3.98310 4.06359 4.12544 4.25705 4.30744 4.33932 4.37056 4.41527 4.54869 4.63064 4.80976 4.89295 4.94479 4.95218 4.98915 5.06018 5.13998 5.21019 5.25628 5.35334 5.43921 5.54076 5.88147 6.02554 6.21311 6.45838 7.08673 7.22719 8.75416 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.002813 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.588282 B = 9951.958133 C =11607.780238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.142 6.142 10 C -0.132 4.132 11 C 0.539 3.461 12 O -0.545 6.545 13 N -0.705 5.705 14 C 0.197 3.803 15 H 0.083 0.917 16 C -0.099 4.099 17 C -0.085 4.085 18 C -0.149 4.149 19 C 0.081 3.919 20 F -0.148 7.148 21 C -0.153 4.153 22 C -0.072 4.072 23 C 0.084 3.916 24 H 0.084 0.916 25 C -0.153 4.153 26 C -0.153 4.153 27 C 0.050 3.950 28 O -0.386 6.386 29 H 0.270 0.730 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.416 0.584 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.855 -21.734 2.546 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.085 5.915 10 C -0.283 4.283 11 C 0.325 3.675 12 O -0.421 6.421 13 N -0.362 5.362 14 C 0.092 3.908 15 H 0.101 0.899 16 C -0.099 4.099 17 C -0.103 4.103 18 C -0.167 4.167 19 C 0.062 3.938 20 F -0.127 7.127 21 C -0.171 4.171 22 C -0.091 4.091 23 C 0.025 3.975 24 H 0.102 0.898 25 C -0.190 4.190 26 C -0.190 4.190 27 C -0.026 4.026 28 O -0.305 6.305 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.255 0.745 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.810 -22.187 2.400 23.992 hybrid contribution 1.821 1.373 -0.039 2.282 sum 10.631 -20.813 2.361 23.490 Atomic orbital electron populations 1.70172 1.07904 1.28533 1.48142 1.26074 0.95916 1.03200 0.93856 0.85001 0.78284 0.76288 0.78717 1.19476 1.20448 1.18159 1.23217 0.95371 0.92197 1.58621 0.89966 1.85521 1.10106 0.98856 1.97023 1.23379 1.03758 0.94307 1.06830 1.19978 0.86333 0.86266 0.74875 1.90678 1.16879 1.85617 1.48936 1.45732 1.10473 1.03774 1.76204 1.19620 0.96165 0.79754 0.95278 0.89868 1.19792 0.94186 0.97266 0.98699 1.21002 0.91146 0.99180 0.98966 1.21318 1.02100 0.95016 0.98292 1.17982 0.86597 0.91664 0.97563 1.91483 1.65708 1.70864 1.84630 1.21290 0.91022 1.02048 1.02786 1.20959 1.00281 0.93307 0.94548 1.23267 0.96908 0.82228 0.95053 0.89823 1.23381 0.98685 0.98200 0.98758 1.23140 1.03011 0.94120 0.98744 1.23247 0.91835 0.97315 0.90224 1.88354 1.55847 1.29099 1.57211 0.92062 0.87079 0.87399 0.74539 0.82874 0.82615 0.83216 0.84323 0.90670 0.91462 0.89666 0.89523 0.90950 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.91 13.22 21.65 0.29 -54.63 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 42.73 29.55 68.60 2.03 44.76 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 7 C -0.55 -30.25 9.50 67.95 0.65 -29.60 16 8 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 9 S -0.14 -7.53 20.57 -56.49 -1.16 -8.69 16 10 C -0.13 -4.81 6.16 71.23 0.44 -4.38 16 11 C 0.54 17.81 6.98 87.66 0.61 18.43 16 12 O -0.54 -22.32 12.63 -3.04 -0.04 -22.36 16 13 N -0.71 -16.08 4.99 -446.10 -2.23 -18.30 16 14 C 0.20 4.42 2.22 44.24 0.10 4.52 16 15 H 0.08 2.28 7.44 -2.38 -0.02 2.26 16 16 C -0.10 -1.85 4.67 -19.86 -0.09 -1.94 16 17 C -0.08 -1.27 9.06 22.26 0.20 -1.07 16 18 C -0.15 -2.26 10.03 22.31 0.22 -2.03 16 19 C 0.08 1.47 7.30 22.37 0.16 1.63 16 20 F -0.15 -2.92 17.27 44.97 0.78 -2.14 16 21 C -0.15 -2.64 10.03 22.31 0.22 -2.41 16 22 C -0.07 -1.34 9.67 22.26 0.22 -1.13 16 23 C 0.08 1.85 3.15 31.26 0.10 1.95 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 C -0.15 -3.94 4.85 32.05 0.16 -3.78 16 26 C -0.15 -3.00 7.02 31.85 0.22 -2.78 16 27 C 0.05 0.93 7.79 72.45 0.56 1.49 16 28 O -0.39 -8.72 10.73 -148.98 -1.60 -10.32 16 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 32 H 0.42 6.74 6.85 -92.71 -0.64 6.10 16 33 H 0.15 1.54 6.90 -2.91 -0.02 1.52 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.14 2.39 8.04 -2.91 -0.02 2.37 16 37 H 0.07 2.44 6.12 -2.38 -0.01 2.42 16 38 H 0.07 1.88 7.95 -2.39 -0.02 1.87 16 39 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.28 366.72 2.72 -69.56 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.41 Total: 21.96 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.24 Total: -19.85 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.94 Total: -72.93 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.64 Total: -32.68 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.69 kcal Total: -72.28 2.72 -69.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055946141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.950 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds