Wall clock time and date at job start Tue Mar 31 2020 22:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99630 * 2 1 4 4 H 1.48500 * 109.47230 * 269.99539 * 3 2 1 5 5 H 1.48503 * 109.47228 * 29.99713 * 3 2 1 6 6 H 1.48501 * 109.47337 * 149.99698 * 3 2 1 7 7 C 1.38791 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00616 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00250 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.46988 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00180 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99493 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99585 * 175.70432 * 13 11 10 15 15 H 1.09007 * 109.47256 * 34.97197 * 14 13 11 16 16 C 1.50695 * 109.46931 * 274.97427 * 14 13 11 17 17 C 1.38246 * 119.97472 * 319.72333 * 16 14 13 18 18 C 1.38196 * 120.02645 * 179.72834 * 17 16 14 19 19 C 1.38467 * 119.97494 * 0.57062 * 18 17 16 20 20 F 1.35094 * 120.02744 * 179.68192 * 19 18 17 21 21 C 1.38456 * 119.94670 * 359.70445 * 19 18 17 22 22 C 1.38206 * 119.97601 * 359.97438 * 21 19 18 23 23 C 1.52994 * 109.47123 * 154.97060 * 14 13 11 24 24 H 1.08998 * 109.87136 * 179.16897 * 23 14 13 25 25 C 1.54099 * 109.88290 * 300.17876 * 23 14 13 26 26 C 1.54815 * 104.19018 * 121.44985 * 25 23 14 27 27 C 1.54995 * 102.08955 * 20.88175 * 26 25 23 28 28 O 1.43748 * 109.87844 * 58.01089 * 23 14 13 29 29 H 0.96999 * 120.00364 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47495 * 60.00215 * 10 9 7 31 31 H 1.09002 * 109.46971 * 299.99429 * 10 9 7 32 32 H 0.96991 * 120.00177 * 355.42543 * 13 11 10 33 33 H 1.08002 * 119.98902 * 359.97438 * 17 16 14 34 34 H 1.07996 * 120.01642 * 180.25864 * 18 17 16 35 35 H 1.08003 * 120.01682 * 179.97438 * 21 19 18 36 36 H 1.07991 * 119.98887 * 179.97438 * 22 21 19 37 37 H 1.08994 * 110.49095 * 240.13329 * 25 23 14 38 38 H 1.09003 * 110.48052 * 2.64535 * 25 23 14 39 39 H 1.08993 * 110.90391 * 139.07861 * 26 25 23 40 40 H 1.09000 * 110.90801 * 262.68482 * 26 25 23 41 41 H 1.09003 * 110.61867 * 81.47596 * 27 26 25 42 42 H 1.08992 * 110.62202 * 204.31499 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8445 -6.3430 0.0018 14 6 2.3335 -7.7127 0.0975 15 1 1.3850 -7.7847 -0.4349 16 6 2.1247 -8.0709 1.5463 17 6 3.0476 -7.6737 2.4958 18 6 2.8543 -7.9968 3.8256 19 6 1.7419 -8.7287 4.2050 20 9 1.5552 -9.0506 5.5037 21 6 0.8212 -9.1308 3.2524 22 6 1.0131 -8.8009 1.9241 23 6 3.3430 -8.6784 -0.5263 24 1 2.9758 -9.7015 -0.4455 25 6 3.5670 -8.3176 -2.0077 26 6 5.0865 -8.0377 -2.1045 27 6 5.6330 -8.7769 -0.8566 28 8 4.6112 -8.5571 0.1395 29 1 -0.4850 0.8400 -0.0004 30 1 3.1247 -3.7313 0.8905 31 1 3.1246 -3.7312 -0.8895 32 1 3.7991 -6.1851 -0.0651 33 1 3.9180 -7.1074 2.1990 34 1 3.5733 -7.6829 4.5678 35 1 -0.0467 -9.7021 3.5470 36 1 0.2953 -9.1148 1.1808 37 1 3.2914 -9.1540 -2.6499 38 1 2.9955 -7.4285 -2.2743 39 1 5.5021 -8.4596 -3.0195 40 1 5.2898 -6.9686 -2.0434 41 1 5.7473 -9.8416 -1.0606 42 1 6.5815 -8.3442 -0.5389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055946142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:19 Heat of formation + Delta-G solvation = -104.945772 kcal Electronic energy + Delta-G solvation = -26891.254869 eV Core-core repulsion = 22876.794108 eV Total energy + Delta-G solvation = -4014.460761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.91399 -40.64183 -38.93006 -38.52092 -34.84860 -32.43111 -32.37264 -31.71496 -31.10395 -29.49298 -28.78588 -25.59399 -25.23752 -23.14301 -22.66325 -21.67397 -21.10267 -20.15603 -17.95369 -17.74089 -16.89609 -16.87785 -16.52496 -16.06069 -15.89257 -15.59655 -15.26459 -14.84002 -14.80498 -14.60443 -14.08269 -13.90741 -13.77336 -13.56748 -13.29084 -13.23061 -12.62886 -12.61936 -12.52267 -12.19445 -12.04648 -11.83713 -11.47279 -11.25443 -11.06557 -11.05302 -11.02584 -10.97190 -10.76573 -10.08226 -9.81345 -9.45603 -9.12970 -9.07331 -8.98435 -8.56326 -8.23680 -6.49851 -6.21807 -3.92233 1.08037 1.23519 2.98058 3.07411 3.22033 3.27295 3.31022 3.46593 3.57055 3.72631 4.20333 4.22151 4.27124 4.33855 4.58304 4.64856 4.70109 4.79731 4.87730 4.95883 5.13030 5.13868 5.15667 5.25666 5.27346 5.36679 5.39593 5.49244 5.52869 5.67985 5.71530 5.79530 5.86157 5.88193 5.95936 6.08398 6.13405 6.21715 6.39968 6.50691 6.68771 6.85741 7.59367 7.70100 8.35001 8.59335 9.23644 10.85609 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010247 B = 0.003281 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.919600 B = 8531.432164 C =10241.721791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.513 6.513 13 N -0.727 5.727 14 C 0.192 3.808 15 H 0.109 0.891 16 C -0.102 4.102 17 C -0.054 4.054 18 C -0.158 4.158 19 C 0.095 3.905 20 F -0.144 7.144 21 C -0.157 4.157 22 C -0.077 4.077 23 C 0.076 3.924 24 H 0.082 0.918 25 C -0.154 4.154 26 C -0.155 4.155 27 C 0.045 3.955 28 O -0.365 6.365 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.402 0.598 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.795 -21.986 -0.923 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.381 5.381 14 C 0.086 3.914 15 H 0.127 0.873 16 C -0.103 4.103 17 C -0.072 4.072 18 C -0.176 4.176 19 C 0.076 3.924 20 F -0.123 7.123 21 C -0.176 4.176 22 C -0.095 4.095 23 C 0.018 3.982 24 H 0.100 0.900 25 C -0.192 4.192 26 C -0.193 4.193 27 C -0.032 4.032 28 O -0.284 6.284 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.237 0.763 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.642 -22.166 -0.640 23.800 hybrid contribution 2.351 1.260 0.066 2.669 sum 10.994 -20.906 -0.574 23.627 Atomic orbital electron populations 1.70014 1.05950 1.27451 1.46873 1.24977 0.95007 0.98996 0.94530 0.86181 0.79444 0.81625 0.78331 1.20283 1.20746 1.19690 1.22865 0.94900 0.91692 1.58943 0.90960 1.85396 1.04829 0.96268 1.96708 1.23527 1.06600 0.95346 1.04866 1.20336 0.86538 0.86245 0.74836 1.90699 1.15308 1.85467 1.47203 1.45941 1.10451 1.04535 1.77217 1.19932 0.97668 0.81835 0.91988 0.87311 1.20167 0.95174 0.98980 0.96001 1.20786 0.98406 0.96885 0.91121 1.21129 0.97854 1.01049 0.97604 1.17739 0.96688 0.99827 0.78172 1.91480 1.95272 1.91076 1.34432 1.21050 0.99936 1.03612 0.92967 1.20850 0.96541 0.96861 0.95297 1.23039 0.85384 0.98523 0.91303 0.89989 1.23017 0.97117 1.03407 0.95663 1.23144 0.95133 1.01999 0.99036 1.23574 0.92394 0.99455 0.87763 1.88926 1.14216 1.92577 1.32673 0.92187 0.89229 0.89343 0.76347 0.84946 0.84964 0.84886 0.85040 0.90383 0.89448 0.90172 0.90196 0.92227 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.54 7.80 -10.98 -0.09 9.45 16 12 O -0.51 -11.16 15.50 5.56 0.09 -11.07 16 13 N -0.73 -9.25 3.60 -54.93 -0.20 -9.45 16 14 C 0.19 2.16 1.93 -69.09 -0.13 2.03 16 15 H 0.11 1.33 7.38 -51.93 -0.38 0.94 16 16 C -0.10 -1.25 4.86 -104.62 -0.51 -1.75 16 17 C -0.05 -0.66 8.50 -39.59 -0.34 -1.00 16 18 C -0.16 -1.94 10.03 -39.51 -0.40 -2.34 16 19 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 20 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 21 C -0.16 -1.84 10.03 -39.51 -0.40 -2.24 16 22 C -0.08 -0.89 9.67 -39.59 -0.38 -1.28 16 23 C 0.08 0.65 3.16 -26.16 -0.08 0.57 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 C -0.15 -1.14 6.39 -25.20 -0.16 -1.30 16 26 C -0.16 -0.98 7.15 -24.72 -0.18 -1.16 16 27 C 0.04 0.29 7.72 38.21 0.29 0.59 16 28 O -0.36 -3.29 9.39 -35.23 -0.33 -3.62 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 31 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 32 H 0.40 4.31 8.15 -40.82 -0.33 3.98 16 33 H 0.13 1.53 7.47 -52.49 -0.39 1.14 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.13 1.26 8.03 -52.49 -0.42 0.84 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.79 7.35 -51.93 -0.38 0.40 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -34.26 371.85 -9.22 -43.48 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.68 Total: 2.93 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.23 Total: -13.16 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.54 Total: -34.82 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.24 Total: -14.69 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.26 -9.22 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055946142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.465 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds