Wall clock time and date at job start Tue Mar 31 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99630 * 2 1 4 4 H 1.48500 * 109.47230 * 269.99539 * 3 2 1 5 5 H 1.48503 * 109.47228 * 29.99713 * 3 2 1 6 6 H 1.48501 * 109.47337 * 149.99698 * 3 2 1 7 7 C 1.38791 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00616 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00250 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.46988 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00180 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99493 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99585 * 175.70432 * 13 11 10 15 15 H 1.09007 * 109.47256 * 34.97197 * 14 13 11 16 16 C 1.50695 * 109.46931 * 274.97427 * 14 13 11 17 17 C 1.38246 * 119.97472 * 319.72333 * 16 14 13 18 18 C 1.38196 * 120.02645 * 179.72834 * 17 16 14 19 19 C 1.38467 * 119.97494 * 0.57062 * 18 17 16 20 20 F 1.35094 * 120.02744 * 179.68192 * 19 18 17 21 21 C 1.38456 * 119.94670 * 359.70445 * 19 18 17 22 22 C 1.38206 * 119.97601 * 359.97438 * 21 19 18 23 23 C 1.52994 * 109.47123 * 154.97060 * 14 13 11 24 24 H 1.08998 * 109.87136 * 179.16897 * 23 14 13 25 25 C 1.54099 * 109.88290 * 300.17876 * 23 14 13 26 26 C 1.54815 * 104.19018 * 121.44985 * 25 23 14 27 27 C 1.54995 * 102.08955 * 20.88175 * 26 25 23 28 28 O 1.43748 * 109.87844 * 58.01089 * 23 14 13 29 29 H 0.96999 * 120.00364 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47495 * 60.00215 * 10 9 7 31 31 H 1.09002 * 109.46971 * 299.99429 * 10 9 7 32 32 H 0.96991 * 120.00177 * 355.42543 * 13 11 10 33 33 H 1.08002 * 119.98902 * 359.97438 * 17 16 14 34 34 H 1.07996 * 120.01642 * 180.25864 * 18 17 16 35 35 H 1.08003 * 120.01682 * 179.97438 * 21 19 18 36 36 H 1.07991 * 119.98887 * 179.97438 * 22 21 19 37 37 H 1.08994 * 110.49095 * 240.13329 * 25 23 14 38 38 H 1.09003 * 110.48052 * 2.64535 * 25 23 14 39 39 H 1.08993 * 110.90391 * 139.07861 * 26 25 23 40 40 H 1.09000 * 110.90801 * 262.68482 * 26 25 23 41 41 H 1.09003 * 110.61867 * 81.47596 * 27 26 25 42 42 H 1.08992 * 110.62202 * 204.31499 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8445 -6.3430 0.0018 14 6 2.3335 -7.7127 0.0975 15 1 1.3850 -7.7847 -0.4349 16 6 2.1247 -8.0709 1.5463 17 6 3.0476 -7.6737 2.4958 18 6 2.8543 -7.9968 3.8256 19 6 1.7419 -8.7287 4.2050 20 9 1.5552 -9.0506 5.5037 21 6 0.8212 -9.1308 3.2524 22 6 1.0131 -8.8009 1.9241 23 6 3.3430 -8.6784 -0.5263 24 1 2.9758 -9.7015 -0.4455 25 6 3.5670 -8.3176 -2.0077 26 6 5.0865 -8.0377 -2.1045 27 6 5.6330 -8.7769 -0.8566 28 8 4.6112 -8.5571 0.1395 29 1 -0.4850 0.8400 -0.0004 30 1 3.1247 -3.7313 0.8905 31 1 3.1246 -3.7312 -0.8895 32 1 3.7991 -6.1851 -0.0651 33 1 3.9180 -7.1074 2.1990 34 1 3.5733 -7.6829 4.5678 35 1 -0.0467 -9.7021 3.5470 36 1 0.2953 -9.1148 1.1808 37 1 3.2914 -9.1540 -2.6499 38 1 2.9955 -7.4285 -2.2743 39 1 5.5021 -8.4596 -3.0195 40 1 5.2898 -6.9686 -2.0434 41 1 5.7473 -9.8416 -1.0606 42 1 6.5815 -8.3442 -0.5389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055946142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:18 Heat of formation + Delta-G solvation = -125.857928 kcal Electronic energy + Delta-G solvation = -26892.161688 eV Core-core repulsion = 22876.794108 eV Total energy + Delta-G solvation = -4015.367580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.91378 -41.57482 -39.90962 -39.59748 -35.96387 -34.57634 -32.98313 -32.85231 -32.05184 -30.50630 -29.93662 -27.66772 -26.17841 -24.07631 -23.34478 -22.53460 -21.96269 -21.32558 -19.86169 -18.71267 -18.03914 -17.87700 -17.49763 -17.01481 -16.87169 -16.80911 -16.59469 -16.18027 -16.06694 -15.92584 -15.31283 -14.98870 -14.63379 -14.51213 -14.45323 -14.41419 -14.12014 -13.66296 -13.53380 -13.31150 -13.15475 -12.92280 -12.86903 -12.62213 -12.58297 -12.06410 -11.98339 -11.92713 -11.73353 -11.56479 -11.13487 -10.97736 -10.68226 -10.26186 -10.20629 -10.02987 -9.52997 -8.64663 -8.33916 -6.11281 0.11780 0.30592 1.27650 1.42564 1.47401 1.57505 1.63039 2.23020 2.29092 2.62382 2.90100 3.00436 3.28103 3.33609 3.53842 3.67012 3.78536 3.91070 3.96073 4.02447 4.05181 4.18599 4.29931 4.32866 4.38656 4.44039 4.51734 4.53624 4.63068 4.84811 4.92652 4.96285 5.01906 5.04307 5.14376 5.15668 5.23830 5.28157 5.34283 5.42675 5.60698 5.91452 5.97977 6.20531 6.50414 7.07725 7.24939 8.75207 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010247 B = 0.003281 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.919600 B = 8531.432164 C =10241.721791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.146 6.146 10 C -0.130 4.130 11 C 0.539 3.461 12 O -0.557 6.557 13 N -0.700 5.700 14 C 0.192 3.808 15 H 0.100 0.900 16 C -0.111 4.111 17 C -0.063 4.063 18 C -0.165 4.165 19 C 0.076 3.924 20 F -0.150 7.150 21 C -0.159 4.159 22 C -0.085 4.085 23 C 0.084 3.916 24 H 0.096 0.904 25 C -0.153 4.153 26 C -0.152 4.152 27 C 0.042 3.958 28 O -0.381 6.381 29 H 0.271 0.729 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.414 0.586 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.151 -22.652 -1.525 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.081 5.919 10 C -0.281 4.281 11 C 0.325 3.675 12 O -0.434 6.434 13 N -0.354 5.354 14 C 0.086 3.914 15 H 0.118 0.882 16 C -0.113 4.113 17 C -0.081 4.081 18 C -0.183 4.183 19 C 0.057 3.943 20 F -0.128 7.128 21 C -0.178 4.178 22 C -0.103 4.103 23 C 0.025 3.975 24 H 0.114 0.886 25 C -0.191 4.191 26 C -0.190 4.190 27 C -0.034 4.034 28 O -0.301 6.301 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.252 0.748 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.054 -22.872 -1.245 25.434 hybrid contribution 1.669 1.324 0.255 2.145 sum 12.723 -21.549 -0.990 25.044 Atomic orbital electron populations 1.70178 1.07953 1.28570 1.48072 1.26086 0.95916 1.03218 0.93754 0.84985 0.78214 0.76163 0.78826 1.19203 1.20404 1.18268 1.23207 0.95335 0.92133 1.58791 0.90006 1.85548 1.10325 0.99030 1.97023 1.23370 1.03610 0.94590 1.06561 1.19996 0.86240 0.86443 0.74787 1.90690 1.17138 1.85892 1.49698 1.45643 1.10454 1.04295 1.75002 1.20081 0.98397 0.81048 0.91832 0.88192 1.20343 0.95436 0.99145 0.96328 1.20906 0.98778 0.97247 0.91203 1.21332 0.98072 1.00876 0.98038 1.17977 0.97436 1.00668 0.78214 1.91461 1.95356 1.91214 1.34802 1.21309 1.00252 1.03343 0.92855 1.21128 0.96713 0.96718 0.95760 1.22983 0.84806 0.98117 0.91565 0.88646 1.23013 0.97775 1.03287 0.95026 1.23143 0.94206 1.01834 0.99769 1.23736 0.92098 1.00339 0.87202 1.88912 1.14654 1.92744 1.33752 0.92025 0.87748 0.87196 0.74828 0.84332 0.83725 0.83092 0.83260 0.88719 0.91220 0.88572 0.90706 0.91068 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.86 13.22 21.65 0.29 -55.58 16 2 C 0.02 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.55 -31.06 9.50 67.95 0.65 -30.41 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.21 16 10 C -0.13 -5.05 6.16 71.24 0.44 -4.62 16 11 C 0.54 19.07 7.80 87.66 0.68 19.75 16 12 O -0.56 -24.62 15.50 -3.01 -0.05 -24.67 16 13 N -0.70 -16.97 3.60 -446.09 -1.61 -18.58 16 14 C 0.19 4.10 1.93 44.24 0.09 4.18 16 15 H 0.10 2.38 7.38 -2.38 -0.02 2.36 16 16 C -0.11 -2.61 4.86 -19.86 -0.10 -2.71 16 17 C -0.06 -1.49 8.50 22.26 0.19 -1.31 16 18 C -0.16 -3.94 10.03 22.31 0.22 -3.72 16 19 C 0.08 1.92 7.30 22.38 0.16 2.08 16 20 F -0.15 -3.91 17.27 44.97 0.78 -3.13 16 21 C -0.16 -3.60 10.03 22.31 0.22 -3.38 16 22 C -0.08 -1.89 9.67 22.26 0.22 -1.68 16 23 C 0.08 1.26 3.16 30.96 0.10 1.36 16 24 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 25 C -0.15 -1.93 6.39 31.59 0.20 -1.73 16 26 C -0.15 -1.51 7.15 31.90 0.23 -1.28 16 27 C 0.04 0.43 7.72 72.66 0.56 0.99 16 28 O -0.38 -5.99 9.39 -148.98 -1.40 -7.39 16 29 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.10 3.75 8.14 -2.40 -0.02 3.73 16 31 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 32 H 0.41 8.08 8.15 -92.72 -0.76 7.33 16 33 H 0.14 3.01 7.47 -2.91 -0.02 2.99 16 34 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.15 2.69 8.03 -2.92 -0.02 2.67 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 1.15 7.35 -2.39 -0.02 1.13 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -75.69 371.85 3.49 -72.20 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.29 Total: 22.03 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.33 Total: -21.14 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.32 Total: -74.16 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.44 Total: -32.06 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.21 kcal Total: -75.69 3.49 -72.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055946142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.657 kcal (2) G-P(sol) polarization free energy of solvation -75.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds