Wall clock time and date at job start Tue Mar 31 2020 22:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38250 * 120.04129 * 2 1 4 4 Cl 1.73598 * 119.97811 * 359.95753 * 3 2 1 5 5 C 1.38385 * 120.04678 * 180.23390 * 3 2 1 6 6 C 1.38283 * 120.12155 * 359.49124 * 5 3 2 7 7 C 1.38096 * 120.08631 * 0.51009 * 6 5 3 8 8 C 1.38826 * 120.04677 * 179.97438 * 2 1 3 9 9 N 1.39930 * 120.05928 * 0.03897 * 8 2 1 10 10 C 1.34781 * 119.99669 * 204.75033 * 9 8 2 11 11 O 1.21285 * 120.00355 * 5.76554 * 10 9 8 12 12 C 1.50696 * 119.99381 * 185.76663 * 10 9 8 13 13 N 1.46505 * 109.47060 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00301 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99714 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99924 * 180.02562 * 14 13 12 17 17 N 1.46499 * 109.47362 * 180.02562 * 16 14 13 18 18 C 1.46502 * 119.99631 * 270.00042 * 17 16 14 19 19 C 1.36933 * 120.00529 * 89.99630 * 17 16 14 20 20 H 1.08008 * 119.99825 * 5.54092 * 19 17 16 21 21 C 1.38809 * 120.00377 * 185.54197 * 19 17 16 22 22 N 1.31621 * 120.00072 * 34.63121 * 21 19 17 23 23 Si 1.86801 * 119.99972 * 214.63293 * 21 19 17 24 24 H 1.48505 * 109.46995 * 95.00207 * 23 21 19 25 25 H 1.48499 * 109.47104 * 214.99726 * 23 21 19 26 26 H 1.48497 * 109.47365 * 334.99742 * 23 21 19 27 27 H 1.09002 * 109.47506 * 89.99613 * 1 2 3 28 28 H 1.08998 * 109.47373 * 209.99878 * 1 2 3 29 29 H 1.08999 * 109.47553 * 329.99962 * 1 2 3 30 30 H 1.07993 * 119.93823 * 179.72202 * 5 3 2 31 31 H 1.08001 * 119.95664 * 180.25503 * 6 5 3 32 32 H 1.08006 * 120.02155 * 179.72016 * 7 6 5 33 33 H 0.97003 * 119.99830 * 24.74957 * 9 8 2 34 34 H 1.09004 * 109.47608 * 299.99918 * 12 10 9 35 35 H 1.09003 * 109.47522 * 60.00530 * 12 10 9 36 36 H 0.97006 * 119.99283 * 359.97438 * 13 12 10 37 37 H 1.09006 * 109.47474 * 300.00028 * 16 14 13 38 38 H 1.08997 * 109.47444 * 59.99704 * 16 14 13 39 39 H 1.08998 * 109.47170 * 85.26564 * 18 17 16 40 40 H 1.09005 * 109.47240 * 205.25955 * 18 17 16 41 41 H 1.08996 * 109.47716 * 325.25953 * 18 17 16 42 42 H 0.97002 * 120.00129 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1990 1.1968 0.0000 4 17 1.3315 2.7005 -0.0011 5 6 3.5828 1.1969 -0.0049 6 6 4.2769 0.0009 0.0008 7 6 3.5910 -1.1976 0.0008 8 6 2.2020 -1.2017 0.0005 9 7 1.5046 -2.4148 0.0003 10 6 2.0875 -3.5273 0.4894 11 8 3.1737 -3.4577 1.0245 12 6 1.3895 -4.8576 0.3714 13 7 2.2226 -5.9013 0.9739 14 6 1.7980 -7.1804 0.9839 15 8 0.7260 -7.4674 0.4946 16 6 2.6547 -8.2538 1.6042 17 7 1.9769 -9.5474 1.4883 18 6 1.0731 -9.9984 2.5495 19 6 2.1879 -10.3350 0.3882 20 1 2.9207 -10.0456 -0.3506 21 6 1.4602 -11.5053 0.2225 22 7 0.2089 -11.5651 0.6266 23 14 2.2566 -12.9956 -0.5740 24 1 2.7892 -13.8951 0.4807 25 1 1.2460 -13.7243 -1.3820 26 1 3.3675 -12.5521 -1.4539 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 4.1217 2.1328 -0.0094 31 1 5.3569 0.0042 0.0012 32 1 4.1342 -2.1311 0.0007 33 1 0.6017 -2.4551 -0.3520 34 1 0.4315 -4.8127 0.8896 35 1 1.2229 -5.0886 -0.6808 36 1 3.0802 -5.6718 1.3649 37 1 3.6129 -8.2985 1.0863 38 1 2.8210 -8.0233 2.6564 39 1 0.0790 -9.5848 2.3802 40 1 1.0196 -11.0871 2.5429 41 1 1.4482 -9.6589 3.5149 42 1 -0.2995 -12.3830 0.5111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:43 Heat of formation + Delta-G solvation = -12.041604 kcal Electronic energy + Delta-G solvation = -25923.188769 eV Core-core repulsion = 21930.632890 eV Total energy + Delta-G solvation = -3992.555879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19250 -39.39389 -38.52602 -36.88331 -35.34657 -35.21090 -33.92280 -32.96582 -31.38406 -30.47523 -28.53806 -27.34215 -26.30608 -25.71878 -23.47817 -22.00566 -21.57859 -20.77852 -19.83966 -18.46877 -17.54930 -16.80501 -16.47046 -16.28039 -16.06461 -15.60895 -15.32911 -14.93978 -14.71484 -14.52872 -14.25357 -13.83616 -13.79394 -13.46335 -13.19578 -13.00577 -12.86855 -12.85260 -12.46088 -12.23930 -12.02089 -11.90320 -11.75898 -11.30494 -11.20319 -10.85348 -10.83721 -10.69875 -10.37558 -10.17514 -10.04544 -9.82631 -9.22675 -9.03585 -8.73551 -8.49156 -8.27527 -6.98098 -5.83136 -3.00282 0.74326 0.78444 1.68148 2.14462 2.49268 3.26779 3.41774 3.46699 3.50261 3.52054 3.69230 4.18691 4.31466 4.45296 4.54220 4.62277 4.95017 4.99588 5.14195 5.16149 5.20774 5.24417 5.26713 5.31705 5.55292 5.62833 5.72690 5.79720 5.86390 5.90076 6.05903 6.13419 6.28139 6.48624 6.67823 6.70066 6.92771 7.34226 7.59738 7.60253 7.84755 8.01018 8.28839 8.98959 9.16008 9.83878 10.28122 11.25957 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031228 B = 0.001817 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.418571 B =15409.045788 C =15726.090474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C -0.017 4.017 4 Cl -0.067 7.067 5 C -0.128 4.128 6 C -0.091 4.091 7 C -0.123 4.123 8 C 0.165 3.835 9 N -0.668 5.668 10 C 0.514 3.486 11 O -0.511 6.511 12 C 0.102 3.898 13 N -0.739 5.739 14 C 0.472 3.528 15 O -0.513 6.513 16 C 0.135 3.865 17 N -0.570 5.570 18 C 0.147 3.853 19 C -0.262 4.262 20 H 0.077 0.923 21 C 0.007 3.993 22 N -0.878 5.878 23 Si 0.888 3.112 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.279 1.279 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.416 0.584 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.404 0.596 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.015 0.985 40 H 0.072 0.928 41 H 0.002 0.998 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 28.031 -0.225 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.114 4.114 3 C -0.044 4.044 4 Cl -0.038 7.038 5 C -0.147 4.147 6 C -0.110 4.110 7 C -0.143 4.143 8 C 0.069 3.931 9 N -0.313 5.313 10 C 0.302 3.698 11 O -0.386 6.386 12 C -0.026 4.026 13 N -0.400 5.400 14 C 0.256 3.744 15 O -0.385 6.385 16 C 0.002 3.998 17 N -0.289 5.289 18 C 0.002 3.998 19 C -0.390 4.390 20 H 0.095 0.905 21 C -0.192 4.192 22 N -0.521 5.521 23 Si 0.717 3.283 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.204 1.204 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.253 0.747 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.240 0.760 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.090 0.910 41 H 0.020 0.980 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.850 27.662 -0.200 27.929 hybrid contribution -0.056 -0.241 -0.611 0.659 sum 3.794 27.421 -0.810 27.694 Atomic orbital electron populations 1.20828 0.89986 1.03880 1.03108 1.19373 0.96724 0.90252 1.05020 1.20472 0.92211 0.86250 1.05493 1.98363 1.76970 1.31577 1.96873 1.21032 0.91775 0.99393 1.02520 1.21029 1.00375 0.91043 0.98528 1.21556 0.92359 1.00324 1.00111 1.17431 0.91398 0.84274 0.99981 1.43535 1.19208 1.06815 1.61742 1.21090 0.86203 0.85856 0.76633 1.90662 1.20881 1.85849 1.41195 1.20949 0.95576 0.84453 1.01646 1.46476 1.23587 1.06807 1.63128 1.23958 0.88951 0.82138 0.79373 1.90702 1.22678 1.81179 1.43898 1.20959 0.95476 0.84490 0.98920 1.44197 1.51000 1.13046 1.20663 1.21051 0.91821 1.00740 0.86154 1.19191 1.17106 1.00350 1.02397 0.90517 1.24697 0.94695 0.99857 0.99995 1.70392 1.05573 1.26279 1.49848 0.86473 0.79252 0.84079 0.78515 1.21447 1.22093 1.20379 0.90396 0.91214 0.90226 0.84889 0.84616 0.82937 0.74670 0.88686 0.88457 0.75967 0.90314 0.91018 0.96624 0.90992 0.97975 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.05 36.00 0.33 -0.44 16 2 C -0.11 -0.93 5.90 -104.41 -0.62 -1.55 16 3 C -0.02 -0.15 6.31 -39.52 -0.25 -0.39 16 4 Cl -0.07 -0.51 27.29 -51.86 -1.42 -1.93 16 5 C -0.13 -1.00 9.83 -39.51 -0.39 -1.39 16 6 C -0.09 -0.74 10.04 -39.62 -0.40 -1.14 16 7 C -0.12 -1.22 8.72 -39.39 -0.34 -1.57 16 8 C 0.16 1.56 6.41 -83.70 -0.54 1.02 16 9 N -0.67 -5.64 4.98 -9.87 -0.05 -5.69 16 10 C 0.51 5.54 7.70 -10.99 -0.08 5.46 16 11 O -0.51 -6.71 12.84 5.55 0.07 -6.63 16 12 C 0.10 1.23 6.16 -5.19 -0.03 1.19 16 13 N -0.74 -10.96 5.53 -61.47 -0.34 -11.30 16 14 C 0.47 9.36 7.90 -10.99 -0.09 9.27 16 15 O -0.51 -12.81 16.43 5.55 0.09 -12.72 16 16 C 0.13 2.67 6.19 -5.20 -0.03 2.64 16 17 N -0.57 -14.51 2.42 -182.50 -0.44 -14.96 16 18 C 0.15 3.69 9.34 59.85 0.56 4.25 16 19 C -0.26 -7.33 9.62 -15.06 -0.14 -7.48 16 20 H 0.08 2.10 8.01 -52.48 -0.42 1.68 16 21 C 0.01 0.21 4.65 -17.43 -0.08 0.13 16 22 N -0.88 -26.30 11.21 55.49 0.62 -25.68 16 23 Si 0.89 21.80 29.67 -169.99 -5.04 16.76 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.38 6.98 -51.93 -0.36 0.02 16 29 H 0.08 0.50 6.90 -51.93 -0.36 0.14 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.15 1.68 5.79 -52.48 -0.30 1.38 16 33 H 0.42 2.39 7.40 -40.82 -0.30 2.08 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.40 5.33 7.44 -40.82 -0.30 5.03 16 37 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 38 H 0.07 1.21 7.94 -51.93 -0.41 0.79 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 1.94 6.07 -51.93 -0.32 1.63 16 41 H 0.00 0.04 7.96 -51.93 -0.41 -0.38 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -35.60 369.03 -8.33 -43.93 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.28 Total: 2.65 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -2.11 Total: 10.01 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.21 Total: -57.62 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.16 Total: -19.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.04 Total: 16.76 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.60 -8.33 -43.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.889 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds