Wall clock time and date at job start Tue Mar 31 2020 23:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47315 * 2 1 4 4 N 1.46499 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.36929 * 120.00206 * 274.33813 * 4 3 2 6 6 H 1.08002 * 120.00203 * 337.80064 * 5 4 3 7 7 C 1.38812 * 120.00416 * 157.79945 * 5 4 3 8 8 N 1.31629 * 119.99490 * 7.73811 * 7 5 4 9 9 Si 1.86799 * 120.00480 * 187.73585 * 7 5 4 10 10 H 1.48501 * 109.46748 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47091 * 119.99920 * 9 7 5 12 12 H 1.48503 * 109.47121 * 239.99987 * 9 7 5 13 13 C 1.46499 * 119.99773 * 94.33794 * 4 3 2 14 14 C 1.50703 * 109.47329 * 269.99750 * 13 4 3 15 15 O 1.21278 * 119.99586 * 0.02562 * 14 13 4 16 16 N 1.34775 * 119.99977 * 179.97438 * 14 13 4 17 17 N 1.40101 * 119.99908 * 180.02562 * 16 14 13 18 18 C 1.34775 * 120.00130 * 180.28194 * 17 16 14 19 19 O 1.21565 * 120.00024 * 359.72110 * 18 17 16 20 20 C 1.47770 * 120.00396 * 179.72365 * 18 17 16 21 21 C 1.39633 * 120.15052 * 0.02562 * 20 18 17 22 22 C 1.37894 * 119.86409 * 180.02562 * 21 20 18 23 23 C 1.38424 * 120.18057 * 0.02562 * 22 21 20 24 24 C 1.38265 * 120.31821 * 359.97438 * 23 22 21 25 25 C 1.38152 * 120.13348 * 359.71689 * 24 23 22 26 26 Cl 1.73597 * 120.09844 * 180.30256 * 25 24 23 27 27 H 1.08999 * 109.46795 * 60.00521 * 1 2 3 28 28 H 1.09005 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47280 * 300.00386 * 1 2 3 30 30 H 1.09005 * 109.47403 * 239.99622 * 2 1 3 31 31 H 1.09013 * 109.46844 * 119.99671 * 2 1 3 32 32 H 1.08995 * 109.47262 * 59.99602 * 3 2 1 33 33 H 1.08999 * 109.46764 * 299.99498 * 3 2 1 34 34 H 0.96998 * 119.99427 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46982 * 149.99968 * 13 4 3 36 36 H 1.09002 * 109.47172 * 29.99947 * 13 4 3 37 37 H 0.97003 * 120.00104 * 0.02562 * 16 14 13 38 38 H 0.97003 * 119.99921 * 359.97438 * 17 16 14 39 39 H 1.07996 * 120.06633 * 359.97438 * 21 20 18 40 40 H 1.07996 * 119.91037 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.84154 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.93291 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3529 1.1833 6 1 3.7089 1.6373 2.1079 7 6 5.5001 0.8966 1.1941 8 7 6.1361 0.6951 0.0594 9 14 6.3618 0.5687 2.8187 10 1 5.4359 0.8707 3.9398 11 1 6.7687 -0.8579 2.8840 12 1 7.5655 1.4320 2.9237 13 6 4.2380 1.5382 -1.2642 14 6 4.4894 0.1543 -1.8052 15 8 4.0947 -0.8164 -1.1945 16 7 5.1520 -0.0046 -2.9680 17 7 5.3852 -1.2911 -3.4712 18 6 6.0527 -1.4503 -4.6312 19 8 6.4480 -0.4773 -5.2435 20 6 6.3041 -2.8075 -5.1589 21 6 5.8511 -3.9273 -4.4585 22 6 6.0894 -5.1911 -4.9561 23 6 6.7766 -5.3519 -6.1469 24 6 7.2286 -4.2483 -6.8465 25 6 6.9915 -2.9760 -6.3633 26 17 7.5526 -1.5907 -7.2464 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 7.0522 0.3766 0.0669 35 1 5.1903 2.0408 -1.0951 36 1 3.6492 2.1079 -1.9831 37 1 5.4673 0.7718 -3.4566 38 1 5.0702 -2.0675 -2.9824 39 1 5.3159 -3.8039 -3.5287 40 1 5.7397 -6.0577 -4.4148 41 1 6.9606 -6.3443 -6.5313 42 1 7.7638 -4.3810 -7.7752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072579926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:52 Heat of formation + Delta-G solvation = 18.041671 kcal Electronic energy + Delta-G solvation = -27166.037708 eV Core-core repulsion = 23174.786338 eV Total energy + Delta-G solvation = -3991.251370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23961 -38.80272 -37.82220 -36.42045 -35.80199 -34.28736 -32.92178 -32.10612 -30.92643 -30.66659 -29.94544 -26.84719 -25.53928 -24.08699 -22.85890 -22.17649 -20.86279 -20.45387 -19.81462 -18.06500 -17.27912 -16.70785 -16.48383 -15.52864 -15.45174 -15.22750 -14.95623 -14.68558 -14.25666 -14.23982 -13.86695 -13.73107 -13.47289 -13.14138 -12.98205 -12.83788 -12.22053 -12.15202 -11.73810 -11.59954 -11.58200 -11.24791 -11.14289 -11.03178 -10.83088 -10.62604 -10.59035 -10.27767 -10.04660 -9.90373 -9.61056 -9.49739 -9.35963 -8.96830 -8.91208 -8.44855 -7.47728 -6.91117 -5.88141 -3.27306 0.54255 0.91286 2.07770 2.51056 2.81118 3.35949 3.43753 3.44958 3.59833 4.15041 4.30864 4.44675 4.48416 4.63177 4.88842 4.97414 5.16652 5.25395 5.35793 5.45299 5.47994 5.79144 5.82324 5.83840 5.87648 6.05236 6.12544 6.19708 6.25394 6.39682 6.47078 6.55653 6.59530 6.77278 7.09176 7.23636 7.33143 7.40322 7.49068 7.70003 8.25190 8.44249 8.54328 9.11102 9.58891 9.75554 10.18839 11.19053 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.003090 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.038595 B = 9058.691632 C = 9541.976003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.148 3.852 4 N -0.572 5.572 5 C -0.241 4.241 6 H 0.077 0.923 7 C 0.007 3.993 8 N -0.911 5.911 9 Si 0.911 3.089 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.176 3.824 14 C 0.531 3.469 15 O -0.540 6.540 16 N -0.539 5.539 17 N -0.508 5.508 18 C 0.541 3.459 19 O -0.529 6.529 20 C -0.114 4.114 21 C -0.076 4.076 22 C -0.123 4.123 23 C -0.087 4.087 24 C -0.123 4.123 25 C 0.014 3.986 26 Cl -0.031 7.031 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.255 0.745 35 H 0.125 0.875 36 H 0.035 0.965 37 H 0.419 0.581 38 H 0.422 0.578 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 -9.125 -13.073 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.290 5.290 5 C -0.370 4.370 6 H 0.095 0.905 7 C -0.189 4.189 8 N -0.558 5.558 9 Si 0.742 3.258 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.219 1.219 13 C 0.043 3.957 14 C 0.319 3.681 15 O -0.413 6.413 16 N -0.292 5.292 17 N -0.252 5.252 18 C 0.326 3.674 19 O -0.405 6.405 20 C -0.120 4.120 21 C -0.095 4.095 22 C -0.141 4.141 23 C -0.105 4.105 24 C -0.142 4.142 25 C -0.014 4.014 26 Cl -0.001 7.001 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.142 0.858 36 H 0.053 0.947 37 H 0.259 0.741 38 H 0.264 0.736 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.916 -8.982 -13.022 15.846 hybrid contribution 0.798 -0.655 0.853 1.339 sum -0.118 -9.637 -12.170 15.524 Atomic orbital electron populations 1.21784 0.98130 1.00234 1.00494 1.22144 0.92509 1.00329 1.03050 1.20984 0.84123 0.94132 0.98586 1.43866 0.99824 1.83248 1.02110 1.19319 0.95218 1.36211 0.86203 0.90527 1.24919 0.97822 0.99101 0.97104 1.69622 1.11609 1.50667 1.23920 0.86068 0.79029 0.77707 0.82985 1.20437 1.21769 1.21859 1.20702 0.99319 0.89544 0.86097 1.23034 0.74211 0.95263 0.75633 1.90492 1.52585 1.41713 1.56474 1.45962 1.62182 0.96122 1.24912 1.44694 1.56410 1.02252 1.21863 1.18007 0.79630 0.88843 0.80886 1.90854 1.51413 1.40061 1.58210 1.19688 1.02746 0.93724 0.95799 1.21424 0.97247 0.91701 0.99092 1.21210 0.99153 0.97304 0.96434 1.21312 0.96032 0.98697 0.94475 1.21073 1.01630 0.90195 1.01262 1.21019 0.97692 0.89788 0.92925 1.98420 1.86920 1.41103 1.73672 0.93757 0.93984 0.93585 0.91684 0.92259 0.93737 0.94382 0.93399 0.85775 0.94716 0.74129 0.73586 0.84559 0.84667 0.84682 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.14 -2.78 5.67 -26.73 -0.15 -2.93 16 3 C 0.15 2.99 5.72 -4.04 -0.02 2.97 16 4 N -0.57 -13.57 2.07 -174.61 -0.36 -13.93 16 5 C -0.24 -6.30 9.70 -15.06 -0.15 -6.45 16 6 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 7 C 0.01 0.19 5.41 -17.43 -0.09 0.09 16 8 N -0.91 -24.52 8.21 55.49 0.46 -24.07 16 9 Si 0.91 21.74 29.56 -169.99 -5.02 16.71 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.18 3.91 5.47 -5.19 -0.03 3.88 16 14 C 0.53 11.90 5.91 -10.98 -0.06 11.84 16 15 O -0.54 -13.62 13.72 5.56 0.08 -13.54 16 16 N -0.54 -10.56 6.26 31.22 0.20 -10.37 16 17 N -0.51 -9.01 6.21 30.51 0.19 -8.82 16 18 C 0.54 9.14 7.88 -12.36 -0.10 9.04 16 19 O -0.53 -10.04 13.81 5.31 0.07 -9.96 16 20 C -0.11 -1.58 5.88 -104.94 -0.62 -2.19 16 21 C -0.08 -0.85 9.54 -39.19 -0.37 -1.22 16 22 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 23 C -0.09 -0.69 10.04 -39.50 -0.40 -1.08 16 24 C -0.12 -1.17 9.82 -39.60 -0.39 -1.56 16 25 C 0.01 0.18 6.35 -39.07 -0.25 -0.07 16 26 Cl -0.03 -0.43 26.02 -51.86 -1.35 -1.78 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.41 6.39 -51.93 -0.33 1.08 16 31 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 0.69 7.84 -51.93 -0.41 0.29 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.12 2.99 6.24 -51.93 -0.32 2.66 16 36 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 37 H 0.42 7.75 8.00 -182.59 -1.46 6.29 16 38 H 0.42 7.16 6.03 -182.59 -1.10 6.05 16 39 H 0.14 1.43 6.41 -52.49 -0.34 1.09 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -31.48 364.24 -10.21 -41.69 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.30 Total: 9.66 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -2.66 Total: 8.92 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.48 Total: -57.19 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.15 Total: -23.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.35 Total: -1.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.48 -10.21 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072579926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.729 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds