Wall clock time and date at job start Tue Mar 31 2020 22:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86798 * 120.00166 * 2 1 4 4 H 1.48503 * 109.47522 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47092 * 299.99733 * 3 2 1 6 6 H 1.48503 * 109.47501 * 59.99714 * 3 2 1 7 7 C 1.39904 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 175.56098 * 7 2 1 9 9 C 1.41153 * 119.99957 * 355.55769 * 7 2 1 10 10 C 1.40864 * 120.16276 * 214.78139 * 9 7 2 11 11 C 1.36385 * 119.82899 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16378 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83391 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99685 * 35.28556 * 13 12 11 15 15 O 1.21275 * 120.00043 * 355.70780 * 14 13 12 16 16 C 1.50699 * 119.99807 * 175.71496 * 14 13 12 17 17 N 1.46499 * 109.47338 * 179.97438 * 16 14 13 18 18 N 1.28724 * 125.31501 * 89.96806 * 17 16 14 19 19 N 1.28973 * 108.99699 * 180.02562 * 18 17 16 20 20 C 1.34212 * 107.25198 * 0.02562 * 19 18 17 21 21 C 1.47889 * 126.70366 * 179.97438 * 20 19 18 22 22 C 1.35881 * 125.92858 * 0.03019 * 21 20 19 23 23 C 1.40943 * 106.74884 * 179.97438 * 22 21 20 24 24 C 1.34729 * 107.02240 * 0.02562 * 23 22 21 25 25 O 1.34298 * 108.66528 * 0.25988 * 24 23 22 26 26 N 1.28866 * 125.31838 * 270.29050 * 17 16 14 27 27 C 1.39485 * 120.33636 * 0.24877 * 12 11 10 28 28 C 1.36373 * 120.16589 * 359.45107 * 27 12 11 29 29 H 0.97007 * 119.99783 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.09103 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.91654 * 180.02562 * 11 10 9 32 32 H 0.96998 * 120.00071 * 215.29308 * 13 12 11 33 33 H 1.09001 * 109.47377 * 59.99586 * 16 14 13 34 34 H 1.09001 * 109.46942 * 299.99803 * 16 14 13 35 35 H 1.08010 * 126.62976 * 0.02562 * 22 21 20 36 36 H 1.08000 * 126.49395 * 180.02562 * 23 22 21 37 37 H 1.08002 * 125.66761 * 180.02562 * 24 23 22 38 38 H 1.07999 * 119.91482 * 179.72037 * 27 12 11 39 39 H 1.08001 * 120.08498 * 180.25499 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8841 2.3964 -1.2126 6 1 1.8840 2.3965 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0729 9 6 1.3056 -2.4322 0.0936 10 6 1.8649 -3.5186 0.7945 11 6 1.1803 -4.6950 0.8808 12 6 -0.0702 -4.8241 0.2767 13 7 -0.7629 -6.0285 0.3686 14 6 -0.6811 -6.7688 1.4918 15 8 0.0561 -6.4260 2.3917 16 6 -1.5056 -8.0227 1.6295 17 7 -1.2393 -8.6420 2.9302 18 7 -1.8837 -8.3965 4.0171 19 7 -1.3893 -9.1125 4.9691 20 6 -0.3887 -9.8367 4.4441 21 6 0.4719 -10.8039 5.1589 22 6 0.3897 -11.1217 6.4774 23 6 1.3939 -12.0785 6.7280 24 6 2.0328 -12.2943 5.5617 25 8 1.4771 -11.5181 4.6171 26 7 -0.3197 -9.5133 3.1661 27 6 -0.6279 -3.7547 -0.4239 28 6 0.0420 -2.5702 -0.5136 29 1 -0.4850 0.8401 -0.0004 30 1 2.8333 -3.4203 1.2624 31 1 1.6076 -5.5287 1.4181 32 1 -1.3042 -6.3347 -0.3758 33 1 -1.2418 -8.7202 0.8345 34 1 -2.5638 -7.7716 1.5561 35 1 -0.3104 -10.7196 7.1948 36 1 1.6103 -12.5495 7.6755 37 1 2.8576 -12.9754 5.4121 38 1 -1.5947 -3.8636 -0.8929 39 1 -0.3929 -1.7417 -1.0529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079120981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:03 Heat of formation + Delta-G solvation = 148.195695 kcal Electronic energy + Delta-G solvation = -26938.203006 eV Core-core repulsion = 22851.488045 eV Total energy + Delta-G solvation = -4086.714962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.47226 -42.80123 -40.01124 -37.50568 -35.32607 -34.65568 -33.57988 -33.33957 -33.09869 -30.78167 -29.72194 -29.31440 -28.34340 -25.19389 -24.50291 -23.59865 -22.02997 -21.60081 -21.16750 -20.95765 -20.06257 -18.58929 -18.09950 -17.62688 -17.39763 -16.60834 -16.26802 -16.02509 -15.79048 -15.40166 -15.18539 -14.14093 -14.04662 -13.98147 -13.48950 -13.29150 -13.16544 -12.89202 -12.84274 -12.78012 -12.26454 -12.16413 -11.82146 -11.49274 -11.37594 -11.24776 -11.20707 -11.15095 -11.06313 -10.83130 -10.24403 -10.15764 -9.66910 -9.59936 -9.33138 -9.06159 -8.65397 -7.66570 -7.01678 -6.71372 -4.44328 0.69986 1.14547 1.50972 2.05016 2.24393 2.31966 2.66768 2.80590 2.99113 3.05297 3.09994 3.13165 3.30140 3.62174 3.91626 4.15625 4.46613 4.53172 4.56911 4.63970 4.67028 4.72680 5.09977 5.39053 5.53311 5.54170 5.60100 5.66520 5.84435 6.06800 6.11250 6.30320 6.53593 6.72475 6.74041 6.94813 7.05967 7.17464 7.52014 7.54751 7.67996 7.94474 8.05218 8.11658 8.20053 8.35664 8.55293 8.83057 8.87667 10.19579 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.002047 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.073283 B =13675.927985 C =14348.990866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.078 0.922 9 C 0.103 3.897 10 C -0.207 4.207 11 C -0.081 4.081 12 C -0.007 4.007 13 N -0.635 5.635 14 C 0.486 3.514 15 O -0.510 6.510 16 C 0.109 3.891 17 N -0.116 5.116 18 N -0.037 5.037 19 N -0.258 5.258 20 C 0.238 3.762 21 C 0.061 3.939 22 C -0.144 4.144 23 C -0.216 4.216 24 C -0.016 4.016 25 O -0.159 6.159 26 N -0.277 5.277 27 C -0.114 4.114 28 C -0.143 4.143 29 H 0.279 0.721 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.400 0.600 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.211 0.789 38 H 0.094 0.906 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 -20.197 3.895 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.100 3.900 10 C -0.227 4.227 11 C -0.101 4.101 12 C -0.099 4.099 13 N -0.279 5.279 14 C 0.268 3.732 15 O -0.385 6.385 16 C -0.016 4.016 17 N -0.026 5.026 18 N -0.030 5.030 19 N -0.131 5.131 20 C -0.041 4.041 21 C 0.008 3.992 22 C -0.166 4.166 23 C -0.235 4.235 24 C -0.086 4.086 25 O -0.053 6.053 26 N -0.127 5.127 27 C -0.134 4.134 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.234 0.766 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.228 0.772 38 H 0.112 0.888 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.375 -19.267 4.074 19.980 hybrid contribution 0.387 0.333 -0.090 0.518 sum -2.988 -18.934 3.985 19.578 Atomic orbital electron populations 1.69761 1.07332 1.28823 1.37597 1.25915 0.94986 1.01335 0.92448 0.86118 0.80606 0.80633 0.78483 1.18517 1.19904 1.19889 1.19574 0.94885 0.90177 1.44151 0.90409 1.17765 0.92251 0.92008 0.87934 1.20812 1.01355 0.94884 1.05614 1.20379 0.92726 0.97835 0.99134 1.17181 0.94369 0.85481 1.12852 1.42735 1.48634 1.21294 1.15248 1.20103 0.84376 0.85037 0.83668 1.90819 1.38106 1.69840 1.39736 1.22152 1.04172 0.95881 0.79363 1.49304 1.18346 1.24512 1.10476 1.78970 1.18293 1.16845 0.88893 1.76070 1.09026 1.06626 1.21373 1.21781 0.96476 0.98831 0.87030 1.17898 0.92687 0.97944 0.90705 1.21841 1.01219 0.99486 0.94096 1.21832 0.99169 1.02649 0.99864 1.24308 1.00406 0.97135 0.86716 1.84114 1.38418 1.44426 1.38391 1.75082 1.11327 1.08497 1.17833 1.20293 0.98338 0.92941 1.01842 1.21206 0.97301 0.95574 1.02168 0.91036 0.88490 0.87650 0.76583 0.83674 0.83270 0.82060 0.82484 0.77212 0.88830 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.56 10.60 55.55 0.59 -19.98 16 2 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 3 Si 0.92 18.70 29.56 -169.99 -5.03 13.68 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.46 -11.98 9.02 -37.85 -0.34 -12.32 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 11 C -0.08 -1.89 8.61 -39.79 -0.34 -2.23 16 12 C -0.01 -0.14 6.31 -83.57 -0.53 -0.67 16 13 N -0.64 -9.62 5.30 -9.74 -0.05 -9.67 16 14 C 0.49 7.56 7.73 -10.98 -0.08 7.47 16 15 O -0.51 -10.83 13.85 5.56 0.08 -10.75 16 16 C 0.11 1.10 7.08 -5.19 -0.04 1.06 16 17 N -0.12 -1.65 3.48 -11.67 -0.04 -1.69 16 18 N -0.04 -0.58 13.23 60.35 0.80 0.22 16 19 N -0.26 -4.10 12.53 32.08 0.40 -3.70 16 20 C 0.24 3.65 8.20 -156.24 -1.28 2.37 16 21 C 0.06 0.80 7.26 -36.48 -0.26 0.53 16 22 C -0.14 -1.53 10.83 -39.40 -0.43 -1.96 16 23 C -0.22 -1.74 10.89 -39.80 -0.43 -2.18 16 24 C -0.02 -0.13 12.08 29.49 0.36 0.23 16 25 O -0.16 -1.93 10.67 4.67 0.05 -1.88 16 26 N -0.28 -4.29 12.18 32.09 0.39 -3.90 16 27 C -0.11 -2.44 9.90 -39.79 -0.39 -2.84 16 28 C -0.14 -3.53 8.61 -39.26 -0.34 -3.87 16 29 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 30 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.11 2.48 6.22 -52.49 -0.33 2.15 16 32 H 0.40 4.09 8.82 -40.82 -0.36 3.73 16 33 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.15 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 3.41 6.13 -52.49 -0.32 3.09 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -34.87 353.84 -6.18 -41.05 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -3.51 Total: 7.50 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -5.18 Total: -16.21 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 2.09 Total: -38.72 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.13 Total: -12.63 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.87 -6.18 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079120981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.244 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds