Wall clock time and date at job start Tue Mar 31 2020 22:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40060 * 125.97707 * 179.71630 * 13 12 11 15 15 C 1.34783 * 119.99863 * 359.97438 * 14 13 12 16 16 O 1.21510 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.48309 * 119.99991 * 179.97438 * 15 14 13 18 18 C 1.41980 * 126.84795 * 179.97438 * 17 15 14 19 19 C 1.36660 * 103.81146 * 180.02562 * 18 17 15 20 20 C 1.47890 * 126.81081 * 180.02562 * 19 18 17 21 21 C 1.39956 * 120.92769 * 359.71483 * 20 19 18 22 22 C 1.37971 * 118.99434 * 179.70875 * 21 20 19 23 23 N 1.31921 * 120.90236 * 0.58232 * 22 21 20 24 24 C 1.31931 * 122.05489 * 359.71697 * 23 22 21 25 25 C 1.37960 * 120.90033 * 359.97438 * 24 23 22 26 26 O 1.34471 * 106.37523 * 359.97438 * 19 18 17 27 27 N 1.20874 * 111.74635 * 359.71014 * 26 19 18 28 28 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.07998 * 126.06297 * 359.97124 * 11 10 9 33 33 H 1.07998 * 126.06660 * 180.16145 * 12 11 10 34 34 H 0.96999 * 120.00485 * 180.02562 * 14 13 12 35 35 H 1.07998 * 128.09793 * 0.02562 * 18 17 15 36 36 H 1.07999 * 120.50468 * 0.02562 * 21 20 19 37 37 H 1.08001 * 119.54858 * 180.29872 * 22 21 20 38 38 H 1.07993 * 119.54554 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.49791 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9598 -5.4618 -1.3036 15 6 5.5265 -6.6025 -0.8626 16 8 5.0888 -7.1551 0.1271 17 6 6.6835 -7.1836 -1.5859 18 6 7.3879 -8.3702 -1.2517 19 6 8.3504 -8.4611 -2.2175 20 6 9.3741 -9.5200 -2.3513 21 6 9.4415 -10.5754 -1.4345 22 6 10.4088 -11.5450 -1.6009 23 7 11.2686 -11.4801 -2.5993 24 6 11.2440 -10.4998 -3.4819 25 6 10.3064 -9.4915 -3.3949 26 8 8.1814 -7.3975 -3.0226 27 7 7.2559 -6.7074 -2.6646 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5912 -4.7503 1.7305 33 1 3.5577 -6.3466 1.0448 34 1 5.3095 -5.0204 -2.0934 35 1 7.2056 -9.0434 -0.4272 36 1 8.7436 -10.6327 -0.6123 37 1 10.4658 -12.3660 -0.9015 38 1 11.9672 -10.4869 -4.2838 39 1 10.2919 -8.6923 -4.1212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117712863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:56 Heat of formation + Delta-G solvation = 153.313680 kcal Electronic energy + Delta-G solvation = -26413.697488 eV Core-core repulsion = 22327.204459 eV Total energy + Delta-G solvation = -4086.493029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.58752 -40.90077 -40.61405 -39.43493 -35.17364 -34.90649 -34.34219 -33.67519 -31.88615 -31.13402 -30.79789 -29.51368 -26.78620 -25.47350 -24.97111 -24.03186 -23.06715 -22.80603 -21.51172 -20.53868 -19.73958 -18.90450 -18.33352 -17.25147 -17.18215 -17.00176 -16.66652 -16.40254 -16.11093 -15.48628 -15.26349 -14.74052 -14.51138 -14.39905 -14.19458 -14.11183 -13.82505 -13.79147 -13.27286 -12.57228 -12.41229 -12.36744 -12.07686 -11.93756 -11.54731 -11.22518 -11.01005 -10.85472 -10.63673 -10.41364 -10.20127 -10.15514 -9.95078 -9.81270 -9.46380 -9.06641 -8.61782 -8.34386 -7.66698 -6.62315 -4.36675 -0.14304 0.50898 0.76593 1.52568 2.15800 2.34937 2.43983 2.83439 3.23212 3.30449 3.34515 3.38842 3.54454 3.55035 3.57738 3.86440 3.87402 4.19481 4.29469 4.37513 4.40578 4.46709 4.60805 4.72119 4.93656 5.11276 5.15666 5.21064 5.33685 5.35278 5.50075 5.58351 5.98580 5.99477 6.25931 6.33958 6.48803 6.67860 7.11511 7.25842 7.34625 7.45510 7.61830 7.73592 7.86940 8.29392 8.41628 8.56602 9.31523 10.75489 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.001789 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.857574 B =15646.414267 C =16380.003706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.610 4.610 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.313 5.313 11 C 0.054 3.946 12 C -0.284 4.284 13 C 0.255 3.745 14 N -0.613 5.613 15 C 0.606 3.394 16 O -0.496 6.496 17 C -0.016 4.016 18 C -0.146 4.146 19 C -0.003 4.003 20 C 0.027 3.973 21 C -0.145 4.145 22 C 0.107 3.893 23 N -0.479 5.479 24 C 0.106 3.894 25 C -0.149 4.149 26 O 0.140 5.860 27 N -0.318 5.318 28 N -0.294 5.294 29 H 0.267 0.733 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.418 0.582 35 H 0.190 0.810 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.870 -22.821 -4.273 30.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.181 4.181 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.648 4.648 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.095 5.095 11 C -0.096 4.096 12 C -0.315 4.315 13 C 0.002 3.998 14 N -0.260 5.260 15 C 0.389 3.611 16 O -0.367 6.367 17 C -0.174 4.174 18 C -0.168 4.168 19 C -0.066 4.066 20 C 0.018 3.982 21 C -0.166 4.166 22 C -0.050 4.050 23 N -0.188 5.188 24 C -0.051 4.051 25 C -0.169 4.169 26 O 0.059 5.941 27 N -0.015 5.015 28 N -0.125 5.125 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.188 0.812 33 H 0.180 0.820 34 H 0.254 0.746 35 H 0.207 0.793 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 19.489 -20.032 -5.179 28.424 hybrid contribution -0.355 -1.873 0.793 2.065 sum 19.134 -21.905 -4.386 29.414 Atomic orbital electron populations 1.70827 1.06772 1.30465 1.45875 1.25930 0.96306 1.02825 0.93064 0.83383 0.74711 0.74299 0.76990 1.21174 1.21227 1.20659 1.22127 0.95431 0.90383 1.56834 0.91767 1.19816 0.86269 0.82772 0.98154 1.48855 1.23134 1.19498 1.17998 1.22582 1.00358 0.89982 0.96692 1.21518 1.02255 1.06344 1.01380 1.18986 0.91412 0.94575 0.94842 1.42132 1.29573 1.24045 1.30220 1.16607 0.80861 0.80148 0.83530 1.90761 1.61290 1.60254 1.24395 1.23212 1.00905 0.97357 0.95939 1.22643 0.94656 0.98009 1.01500 1.22247 0.99321 0.91642 0.93384 1.17862 0.92605 0.91542 0.96232 1.22203 1.00691 0.94094 0.99565 1.22775 0.89911 0.97364 0.94925 1.67676 1.23929 1.24211 1.03011 1.22794 0.96480 0.89028 0.96774 1.22359 0.95323 1.00939 0.98311 1.84891 1.37521 1.27410 1.44234 1.74213 0.99091 1.15075 1.13086 1.77400 1.03320 1.15846 1.15930 0.92238 0.93443 0.94600 0.81202 0.82027 0.74563 0.79328 0.83701 0.81766 0.81881 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.65 55.43 0.76 -25.42 16 2 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 3 Si 1.08 24.95 29.90 -169.99 -5.08 19.87 16 4 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.61 -17.08 9.24 -34.44 -0.32 -17.40 16 8 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.25 6.21 5.57 -5.19 -0.03 6.18 16 10 N -0.31 -7.24 3.67 -62.56 -0.23 -7.47 16 11 C 0.05 1.05 11.43 -17.24 -0.20 0.85 16 12 C -0.28 -5.48 9.60 -39.83 -0.38 -5.87 16 13 C 0.25 5.14 8.11 -154.46 -1.25 3.89 16 14 N -0.61 -10.07 5.44 -11.86 -0.06 -10.13 16 15 C 0.61 9.06 7.82 -12.11 -0.09 8.97 16 16 O -0.50 -8.26 14.07 5.36 0.08 -8.18 16 17 C -0.02 -0.19 7.18 -82.62 -0.59 -0.78 16 18 C -0.15 -1.29 10.39 -38.72 -0.40 -1.69 16 19 C 0.00 -0.03 7.18 -36.20 -0.26 -0.29 16 20 C 0.03 0.17 5.91 -104.66 -0.62 -0.45 16 21 C -0.15 -0.73 9.67 -39.04 -0.38 -1.11 16 22 C 0.11 0.56 11.17 -17.61 -0.20 0.36 16 23 N -0.48 -3.30 10.34 -13.35 -0.14 -3.44 16 24 C 0.11 0.56 11.17 -17.61 -0.20 0.37 16 25 C -0.15 -0.79 9.84 -39.04 -0.38 -1.18 16 26 O 0.14 1.31 11.11 16.03 0.18 1.49 16 27 N -0.32 -3.64 11.81 33.35 0.39 -3.25 16 28 N -0.29 -6.84 12.42 31.43 0.39 -6.45 16 29 H 0.27 7.55 7.22 -40.82 -0.29 7.26 16 30 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 31 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 32 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 33 H 0.16 2.94 5.91 -52.49 -0.31 2.63 16 34 H 0.42 6.17 8.58 -40.82 -0.35 5.82 16 35 H 0.19 1.22 7.55 -52.49 -0.40 0.83 16 36 H 0.15 0.43 7.29 -52.49 -0.38 0.05 16 37 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.16 0.45 8.06 -52.49 -0.42 0.02 16 39 H 0.15 0.54 8.04 -52.48 -0.42 0.12 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -34.31 355.99 -7.21 -41.53 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.46 Total: 3.69 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -5.40 Total: -7.59 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 1.11 Total: -56.17 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.25 Total: -6.70 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.31 -7.21 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117712863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.842 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds