Wall clock time and date at job start Tue Mar 31 2020 22:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40060 * 125.97707 * 179.71630 * 13 12 11 15 15 C 1.34783 * 119.99863 * 359.97438 * 14 13 12 16 16 O 1.21510 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.48309 * 119.99991 * 179.97438 * 15 14 13 18 18 C 1.41980 * 126.84795 * 179.97438 * 17 15 14 19 19 C 1.36660 * 103.81146 * 180.02562 * 18 17 15 20 20 C 1.47890 * 126.81081 * 180.02562 * 19 18 17 21 21 C 1.39956 * 120.92769 * 359.71483 * 20 19 18 22 22 C 1.37971 * 118.99434 * 179.70875 * 21 20 19 23 23 N 1.31921 * 120.90236 * 0.58232 * 22 21 20 24 24 C 1.31931 * 122.05489 * 359.71697 * 23 22 21 25 25 C 1.37960 * 120.90033 * 359.97438 * 24 23 22 26 26 O 1.34471 * 106.37523 * 359.97438 * 19 18 17 27 27 N 1.20874 * 111.74635 * 359.71014 * 26 19 18 28 28 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.07998 * 126.06297 * 359.97124 * 11 10 9 33 33 H 1.07998 * 126.06660 * 180.16145 * 12 11 10 34 34 H 0.96999 * 120.00485 * 180.02562 * 14 13 12 35 35 H 1.07998 * 128.09793 * 0.02562 * 18 17 15 36 36 H 1.07999 * 120.50468 * 0.02562 * 21 20 19 37 37 H 1.08001 * 119.54858 * 180.29872 * 22 21 20 38 38 H 1.07993 * 119.54554 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.49791 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9598 -5.4618 -1.3036 15 6 5.5265 -6.6025 -0.8626 16 8 5.0888 -7.1551 0.1271 17 6 6.6835 -7.1836 -1.5859 18 6 7.3879 -8.3702 -1.2517 19 6 8.3504 -8.4611 -2.2175 20 6 9.3741 -9.5200 -2.3513 21 6 9.4415 -10.5754 -1.4345 22 6 10.4088 -11.5450 -1.6009 23 7 11.2686 -11.4801 -2.5993 24 6 11.2440 -10.4998 -3.4819 25 6 10.3064 -9.4915 -3.3949 26 8 8.1814 -7.3975 -3.0226 27 7 7.2559 -6.7074 -2.6646 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5912 -4.7503 1.7305 33 1 3.5577 -6.3466 1.0448 34 1 5.3095 -5.0204 -2.0934 35 1 7.2056 -9.0434 -0.4272 36 1 8.7436 -10.6327 -0.6123 37 1 10.4658 -12.3660 -0.9015 38 1 11.9672 -10.4869 -4.2838 39 1 10.2919 -8.6923 -4.1212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117712863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:55 Heat of formation + Delta-G solvation = 131.361660 kcal Electronic energy + Delta-G solvation = -26414.649399 eV Core-core repulsion = 22327.204459 eV Total energy + Delta-G solvation = -4087.444940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.39785 -42.43269 -41.01063 -40.77731 -36.62972 -35.73937 -35.60191 -34.96998 -32.77400 -32.23791 -31.57594 -31.12551 -28.50253 -26.70721 -25.53531 -25.08519 -24.40516 -23.57584 -22.81083 -22.00115 -20.96003 -19.72655 -19.27172 -19.15022 -18.38250 -18.12703 -17.30626 -17.02312 -16.90065 -16.70469 -16.63620 -15.94050 -15.78705 -15.59656 -15.16677 -15.00210 -14.92605 -14.57077 -14.38065 -14.23822 -14.02013 -13.78793 -13.27652 -13.05834 -12.64429 -12.56970 -12.23604 -12.11414 -12.00628 -11.87120 -11.82426 -11.44897 -11.06047 -10.71456 -10.55686 -10.16347 -10.04758 -9.96425 -9.34109 -8.81383 -6.58880 -0.69929 -0.16826 0.15630 0.87037 0.97792 1.03295 1.48392 1.52463 1.53019 1.56162 1.76008 1.97926 2.11326 2.45373 2.55611 2.84279 2.98413 3.02600 3.53670 3.57945 3.67813 3.80309 3.86754 3.95600 4.06248 4.06979 4.17820 4.47043 4.56822 4.58871 4.66569 4.72451 4.73132 4.87961 4.89727 4.91544 5.11347 5.50381 5.65244 5.65354 5.85325 5.91374 6.21952 6.37749 6.53605 6.71984 6.82800 6.97494 7.16277 8.55889 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.001789 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.857574 B =15646.414267 C =16380.003706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.017 4.017 3 Si 1.121 2.879 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.624 4.624 8 H 0.044 0.956 9 C 0.258 3.742 10 N -0.339 5.339 11 C 0.061 3.939 12 C -0.287 4.287 13 C 0.262 3.738 14 N -0.614 5.614 15 C 0.611 3.389 16 O -0.512 6.512 17 C -0.036 4.036 18 C -0.144 4.144 19 C 0.014 3.986 20 C 0.009 3.991 21 C -0.140 4.140 22 C 0.099 3.901 23 N -0.504 5.504 24 C 0.098 3.902 25 C -0.149 4.149 26 O 0.150 5.850 27 N -0.334 5.334 28 N -0.343 5.343 29 H 0.262 0.738 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.209 0.791 33 H 0.177 0.823 34 H 0.424 0.576 35 H 0.213 0.787 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.185 0.815 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.524 -24.233 -3.765 32.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.217 4.217 3 Si 0.942 3.058 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.662 4.662 8 H 0.062 0.938 9 C 0.139 3.861 10 N -0.121 5.121 11 C -0.087 4.087 12 C -0.318 4.318 13 C 0.008 3.992 14 N -0.263 5.263 15 C 0.396 3.604 16 O -0.384 6.384 17 C -0.192 4.192 18 C -0.166 4.166 19 C -0.049 4.049 20 C 0.000 4.000 21 C -0.160 4.160 22 C -0.057 4.057 23 N -0.213 5.213 24 C -0.058 4.058 25 C -0.169 4.169 26 O 0.067 5.933 27 N -0.029 5.029 28 N -0.174 5.174 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.225 0.775 33 H 0.194 0.806 34 H 0.261 0.739 35 H 0.229 0.771 36 H 0.184 0.816 37 H 0.205 0.795 38 H 0.202 0.798 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 21.141 -21.473 -4.665 30.492 hybrid contribution -0.716 -1.647 0.585 1.889 sum 20.425 -23.120 -4.080 31.118 Atomic orbital electron populations 1.70917 1.07380 1.30257 1.47220 1.27243 0.96451 1.05998 0.92046 0.82853 0.73779 0.71068 0.78080 1.19221 1.20787 1.19976 1.22304 0.94641 0.92193 1.57023 0.93803 1.19484 0.86353 0.82641 0.97662 1.48632 1.23726 1.20228 1.19476 1.23261 1.00446 0.88405 0.96592 1.21759 1.02120 1.06717 1.01166 1.19319 0.91436 0.93575 0.94837 1.42279 1.28918 1.24666 1.30414 1.16952 0.81032 0.79194 0.83246 1.90727 1.62015 1.60512 1.25187 1.22895 1.00787 0.98794 0.96722 1.22888 0.94175 0.97237 1.02341 1.22486 0.99035 0.91048 0.92318 1.17977 0.92864 0.91727 0.97472 1.22459 1.00706 0.93233 0.99592 1.23203 0.89505 0.98039 0.94927 1.67703 1.24802 1.25008 1.03829 1.23165 0.96883 0.88635 0.97090 1.22558 0.94860 1.01245 0.98228 1.84865 1.36629 1.27635 1.44166 1.74219 0.99697 1.15804 1.13195 1.77309 1.04712 1.17911 1.17442 0.92857 0.92324 0.96393 0.77479 0.80635 0.73900 0.77052 0.81588 0.79517 0.79836 0.82188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.67 13.65 21.45 0.29 -53.38 16 2 C -0.02 -0.98 5.46 84.65 0.46 -0.51 16 3 Si 1.12 50.00 29.90 68.60 2.05 52.05 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.62 -35.57 9.24 25.60 0.24 -35.34 16 8 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 9 C 0.26 13.18 5.57 85.64 0.48 13.66 16 10 N -0.34 -15.84 3.67 -351.84 -1.29 -17.13 16 11 C 0.06 2.34 11.43 83.52 0.95 3.29 16 12 C -0.29 -10.86 9.60 22.11 0.21 -10.64 16 13 C 0.26 10.64 8.11 133.36 1.08 11.73 16 14 N -0.61 -20.24 5.44 -309.72 -1.69 -21.93 16 15 C 0.61 17.90 7.82 86.92 0.68 18.58 16 16 O -0.51 -16.51 14.07 -3.75 -0.05 -16.57 16 17 C -0.04 -0.81 7.18 42.87 0.31 -0.50 16 18 C -0.14 -2.26 10.39 22.83 0.24 -2.02 16 19 C 0.01 0.19 7.18 24.46 0.18 0.37 16 20 C 0.01 0.09 5.91 -19.89 -0.12 -0.02 16 21 C -0.14 -1.04 9.67 22.62 0.22 -0.83 16 22 C 0.10 0.81 11.17 84.62 0.95 1.76 16 23 N -0.50 -6.03 10.34 -196.15 -2.03 -8.06 16 24 C 0.10 0.87 11.17 84.61 0.95 1.81 16 25 C -0.15 -1.29 9.84 22.62 0.22 -1.07 16 26 O 0.15 2.60 11.11 67.54 0.75 3.35 16 27 N -0.33 -7.38 11.81 -49.02 -0.58 -7.96 16 28 N -0.34 -16.30 12.42 -54.49 -0.68 -16.98 16 29 H 0.26 15.03 7.22 -92.71 -0.67 14.36 16 30 H 0.06 2.84 7.94 -2.39 -0.02 2.82 16 31 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 32 H 0.21 6.01 8.06 -2.91 -0.02 5.99 16 33 H 0.18 6.14 5.91 -2.91 -0.02 6.12 16 34 H 0.42 12.73 8.58 -92.71 -0.80 11.94 16 35 H 0.21 2.15 7.55 -2.91 -0.02 2.13 16 36 H 0.17 0.44 7.29 -2.91 -0.02 0.42 16 37 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 38 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 39 H 0.16 0.85 8.04 -2.91 -0.02 0.82 16 Total: -1.00 -74.49 355.99 4.26 -70.23 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.44 Total: 16.12 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 7.04 Total: 0.26 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -5.97 Total: -125.44 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.70 Total: -13.21 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Total: -74.49 4.26 -70.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117712863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.589 kcal (2) G-P(sol) polarization free energy of solvation -74.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds