Wall clock time and date at job start Tue Mar 31 2020 22:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99971 * 2 1 4 4 H 1.48501 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47176 * 300.00015 * 3 2 1 6 6 H 1.48492 * 109.47343 * 60.00042 * 3 2 1 7 7 C 1.38953 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99463 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99681 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00426 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47240 * 180.02562 * 12 10 9 14 14 C 1.35692 * 119.86341 * 89.99321 * 13 12 10 15 15 N 1.30097 * 123.04652 * 179.71679 * 14 13 12 16 16 C 1.34173 * 121.88093 * 0.26869 * 15 14 13 17 17 C 1.40409 * 119.18591 * 359.97438 * 16 15 14 18 18 C 1.40759 * 107.27182 * 180.02562 * 17 16 15 19 19 N 1.30488 * 108.37921 * 359.97438 * 18 17 16 20 20 N 1.36114 * 134.25350 * 179.97438 * 16 15 14 21 21 C 1.40063 * 125.86051 * 359.97438 * 20 16 15 22 22 C 1.38864 * 120.07217 * 324.72844 * 21 20 16 23 23 C 1.38112 * 119.92837 * 179.70094 * 22 21 20 24 24 C 1.38292 * 120.07075 * 0.59694 * 23 22 21 25 25 C 1.38287 * 120.13540 * 359.67858 * 24 23 22 26 26 C 1.38104 * 120.07042 * 0.02562 * 25 24 23 27 27 C 1.35372 * 119.86182 * 270.21665 * 13 12 10 28 28 O 1.21830 * 121.24415 * 0.04570 * 27 13 12 29 29 H 0.97005 * 119.99941 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99991 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47422 * 59.99914 * 12 10 9 32 32 H 1.09000 * 109.47032 * 300.00021 * 12 10 9 33 33 H 1.08002 * 118.47931 * 0.02562 * 14 13 12 34 34 H 1.07998 * 125.80884 * 180.02562 * 18 17 16 35 35 H 1.07994 * 120.03551 * 359.97296 * 22 21 20 36 36 H 1.08001 * 119.96745 * 180.31847 * 23 22 21 37 37 H 1.07999 * 119.93013 * 179.69676 * 24 23 22 38 38 H 1.08001 * 119.95843 * 180.02562 * 25 24 23 39 39 H 1.08001 * 120.03658 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1957 -5.9765 -0.0004 14 6 2.6339 -6.4900 1.1767 15 7 3.4738 -7.4808 1.2496 16 6 3.9749 -8.0672 0.1518 17 6 3.5830 -7.6006 -1.1132 18 6 4.2505 -8.3845 -2.0730 19 7 4.9906 -9.2587 -1.4478 20 7 4.8448 -9.0915 -0.0649 21 6 5.4844 -9.8481 0.9251 22 6 5.8814 -9.2472 2.1123 23 6 6.5063 -9.9975 3.0891 24 6 6.7478 -11.3431 2.8808 25 6 6.3588 -11.9432 1.6972 26 6 5.7280 -11.1997 0.7191 27 6 2.6379 -6.4859 -1.1740 28 8 2.2599 -6.0353 -2.2409 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0005 31 1 0.6174 -4.9205 -0.8913 32 1 0.6167 -4.9209 0.8886 33 1 2.2646 -6.0593 2.0957 34 1 4.1653 -8.2797 -3.1445 35 1 5.6978 -8.1952 2.2735 36 1 6.8107 -9.5318 4.0148 37 1 7.2410 -11.9265 3.6441 38 1 6.5484 -12.9943 1.5377 39 1 5.4240 -11.6690 -0.2049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126811750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:24 Heat of formation + Delta-G solvation = 76.485091 kcal Electronic energy + Delta-G solvation = -27780.039148 eV Core-core repulsion = 23690.214581 eV Total energy + Delta-G solvation = -4089.824567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.23655 -40.41330 -39.06812 -38.06039 -37.36218 -34.52606 -33.91860 -33.71083 -31.45840 -31.29049 -29.84948 -29.48699 -28.18941 -24.98555 -24.70440 -23.73633 -23.29765 -22.27490 -20.73727 -19.80777 -19.20895 -18.26828 -17.93346 -17.12092 -16.86399 -16.60783 -15.96004 -15.84190 -15.19158 -14.78128 -14.73142 -14.49955 -14.19580 -14.18947 -14.13111 -13.95936 -13.75418 -13.62707 -13.01084 -12.89643 -12.50476 -11.97433 -11.90755 -11.68929 -11.54607 -11.25839 -11.16935 -10.55592 -10.44421 -10.36868 -10.19855 -10.09547 -10.04918 -9.69644 -9.27336 -8.72628 -8.49913 -8.21849 -8.16069 -6.57456 -3.98964 0.35676 1.07333 1.16671 1.78231 1.83269 2.41840 2.48381 3.06346 3.20206 3.27140 3.42284 3.60311 3.65109 3.83883 4.05971 4.21052 4.48775 4.55140 4.63702 4.68758 4.76211 4.84311 5.01339 5.04454 5.08531 5.23600 5.26278 5.29088 5.43825 5.55562 5.70722 5.89735 5.99851 6.04129 6.15606 6.19547 6.30055 6.45436 6.54578 6.90704 7.27354 7.41551 7.74911 7.84402 7.93510 8.38560 8.99794 9.30793 9.79469 10.59263 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.002467 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.924635 B =11349.278998 C =12024.161787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.419 3.581 11 O -0.586 6.586 12 C 0.081 3.919 13 N -0.514 5.514 14 C 0.440 3.560 15 N -0.546 5.546 16 C 0.348 3.652 17 C -0.337 4.337 18 C 0.138 3.862 19 N -0.276 5.276 20 N -0.314 5.314 21 C 0.154 3.846 22 C -0.109 4.109 23 C -0.101 4.101 24 C -0.123 4.123 25 C -0.107 4.107 26 C -0.111 4.111 27 C 0.581 3.419 28 O -0.509 6.509 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.213 0.787 34 H 0.202 0.798 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 -20.453 6.462 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.203 3.797 11 O -0.471 6.471 12 C -0.045 4.045 13 N -0.233 5.233 14 C 0.151 3.849 15 N -0.273 5.273 16 C 0.114 3.886 17 C -0.353 4.353 18 C -0.052 4.052 19 N -0.093 5.093 20 N -0.091 5.091 21 C 0.063 3.937 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.130 4.130 27 C 0.375 3.625 28 O -0.383 6.383 29 H 0.084 0.916 30 H 0.229 0.771 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.229 0.771 34 H 0.218 0.782 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.420 -21.420 6.245 23.217 hybrid contribution -0.975 1.948 -0.656 2.275 sum 5.444 -19.472 5.590 20.977 Atomic orbital electron populations 1.69609 1.05982 1.28490 1.49386 1.25311 0.95682 0.99920 0.96711 0.85762 0.79748 0.80775 0.77873 1.19138 1.20553 1.20554 1.19766 0.93476 0.81873 1.48034 0.87697 1.41778 1.09349 1.04385 1.62732 1.19794 0.88551 0.84808 0.86499 1.90590 1.13449 1.86685 1.56363 1.21822 0.91036 0.85251 1.06415 1.46277 1.39489 1.30245 1.07277 1.24747 0.84861 0.85204 0.90082 1.67244 1.17430 1.14171 1.28438 1.19053 0.90193 0.88860 0.90510 1.21016 1.13090 1.07060 0.94145 1.23617 0.91050 0.90116 1.00439 1.77370 1.23947 1.24073 0.83879 1.45446 1.34016 1.25122 1.04547 1.17504 0.98194 0.90303 0.87688 1.21161 0.98011 1.01243 0.92576 1.21031 0.98184 0.93988 0.98747 1.21265 1.00161 0.95115 0.97574 1.21024 0.98215 1.00002 0.93292 1.20983 1.00203 0.91411 1.00450 1.17283 0.80369 0.81691 0.83144 1.90886 1.57941 1.61627 1.27812 0.91605 0.77133 0.86362 0.86720 0.77086 0.78169 0.84425 0.84950 0.85473 0.85175 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.05 13.05 55.50 0.72 -22.33 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.02 9.68 -14.93 -0.14 -8.16 16 8 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.55 -12.83 5.29 -10.96 -0.06 -12.89 16 10 C 0.42 9.10 7.85 -10.99 -0.09 9.02 16 11 O -0.59 -15.21 16.01 5.55 0.09 -15.12 16 12 C 0.08 1.23 5.85 -5.19 -0.03 1.20 16 13 N -0.51 -8.09 2.09 -120.39 -0.25 -8.34 16 14 C 0.44 5.69 11.42 -90.11 -1.03 4.66 16 15 N -0.55 -7.80 9.50 -13.39 -0.13 -7.93 16 16 C 0.35 5.56 7.52 -155.74 -1.17 4.39 16 17 C -0.34 -5.70 6.39 -104.90 -0.67 -6.37 16 18 C 0.14 2.04 12.04 -17.17 -0.21 1.83 16 19 N -0.28 -4.16 12.22 30.75 0.38 -3.79 16 20 N -0.31 -4.76 3.75 -9.93 -0.04 -4.80 16 21 C 0.15 2.02 6.40 -83.63 -0.53 1.48 16 22 C -0.11 -1.28 9.38 -39.40 -0.37 -1.65 16 23 C -0.10 -0.90 10.04 -39.61 -0.40 -1.30 16 24 C -0.12 -0.95 10.04 -39.54 -0.40 -1.35 16 25 C -0.11 -0.89 10.04 -39.61 -0.40 -1.29 16 26 C -0.11 -1.20 9.76 -39.40 -0.38 -1.58 16 27 C 0.58 10.70 7.66 -12.77 -0.10 10.60 16 28 O -0.51 -10.78 16.86 5.07 0.09 -10.69 16 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.39 8.65 7.90 -40.82 -0.32 8.33 16 31 H 0.12 1.78 7.48 -51.93 -0.39 1.39 16 32 H 0.11 1.17 8.00 -51.93 -0.42 0.75 16 33 H 0.21 1.73 8.00 -52.49 -0.42 1.31 16 34 H 0.20 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.14 1.72 7.21 -52.49 -0.38 1.35 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -35.52 353.56 -8.46 -43.97 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -3.55 Total: 9.25 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: -6.01 Total: 12.07 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.63 Total: -60.08 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.17 Total: -25.81 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.52 -8.46 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126811750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.459 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds