Wall clock time and date at job start Tue Mar 31 2020 22:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99971 * 2 1 4 4 H 1.48501 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47176 * 300.00015 * 3 2 1 6 6 H 1.48492 * 109.47343 * 60.00042 * 3 2 1 7 7 C 1.38953 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99463 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99681 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00426 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47240 * 180.02562 * 12 10 9 14 14 C 1.35692 * 119.86341 * 89.99321 * 13 12 10 15 15 N 1.30097 * 123.04652 * 179.71679 * 14 13 12 16 16 C 1.34173 * 121.88093 * 0.26869 * 15 14 13 17 17 C 1.40409 * 119.18591 * 359.97438 * 16 15 14 18 18 C 1.40759 * 107.27182 * 180.02562 * 17 16 15 19 19 N 1.30488 * 108.37921 * 359.97438 * 18 17 16 20 20 N 1.36114 * 134.25350 * 179.97438 * 16 15 14 21 21 C 1.40063 * 125.86051 * 359.97438 * 20 16 15 22 22 C 1.38864 * 120.07217 * 324.72844 * 21 20 16 23 23 C 1.38112 * 119.92837 * 179.70094 * 22 21 20 24 24 C 1.38292 * 120.07075 * 0.59694 * 23 22 21 25 25 C 1.38287 * 120.13540 * 359.67858 * 24 23 22 26 26 C 1.38104 * 120.07042 * 0.02562 * 25 24 23 27 27 C 1.35372 * 119.86182 * 270.21665 * 13 12 10 28 28 O 1.21830 * 121.24415 * 0.04570 * 27 13 12 29 29 H 0.97005 * 119.99941 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99991 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47422 * 59.99914 * 12 10 9 32 32 H 1.09000 * 109.47032 * 300.00021 * 12 10 9 33 33 H 1.08002 * 118.47931 * 0.02562 * 14 13 12 34 34 H 1.07998 * 125.80884 * 180.02562 * 18 17 16 35 35 H 1.07994 * 120.03551 * 359.97296 * 22 21 20 36 36 H 1.08001 * 119.96745 * 180.31847 * 23 22 21 37 37 H 1.07999 * 119.93013 * 179.69676 * 24 23 22 38 38 H 1.08001 * 119.95843 * 180.02562 * 25 24 23 39 39 H 1.08001 * 120.03658 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1957 -5.9765 -0.0004 14 6 2.6339 -6.4900 1.1767 15 7 3.4738 -7.4808 1.2496 16 6 3.9749 -8.0672 0.1518 17 6 3.5830 -7.6006 -1.1132 18 6 4.2505 -8.3845 -2.0730 19 7 4.9906 -9.2587 -1.4478 20 7 4.8448 -9.0915 -0.0649 21 6 5.4844 -9.8481 0.9251 22 6 5.8814 -9.2472 2.1123 23 6 6.5063 -9.9975 3.0891 24 6 6.7478 -11.3431 2.8808 25 6 6.3588 -11.9432 1.6972 26 6 5.7280 -11.1997 0.7191 27 6 2.6379 -6.4859 -1.1740 28 8 2.2599 -6.0353 -2.2409 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0005 31 1 0.6174 -4.9205 -0.8913 32 1 0.6167 -4.9209 0.8886 33 1 2.2646 -6.0593 2.0957 34 1 4.1653 -8.2797 -3.1445 35 1 5.6978 -8.1952 2.2735 36 1 6.8107 -9.5318 4.0148 37 1 7.2410 -11.9265 3.6441 38 1 6.5484 -12.9943 1.5377 39 1 5.4240 -11.6690 -0.2049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126811750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:24 Heat of formation + Delta-G solvation = 54.189419 kcal Electronic energy + Delta-G solvation = -27781.005960 eV Core-core repulsion = 23690.214581 eV Total energy + Delta-G solvation = -4090.791380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.40819 -41.62191 -40.05248 -39.65611 -38.67643 -36.17409 -35.44593 -34.69320 -33.36406 -32.05031 -31.04757 -30.48178 -29.51599 -26.73779 -25.87167 -24.87878 -24.22022 -23.24649 -21.78831 -21.44764 -20.29033 -20.09146 -19.17961 -18.37212 -18.23925 -17.63623 -17.24399 -16.85066 -16.60399 -16.15999 -15.96939 -15.83274 -15.71061 -15.62560 -15.20292 -15.08556 -14.91502 -14.47847 -14.40820 -14.00879 -13.71330 -13.55630 -13.32482 -12.88736 -12.71144 -12.52160 -12.45479 -12.15170 -12.14453 -11.79660 -11.57739 -11.52941 -11.28582 -11.14427 -10.43417 -10.07853 -10.01835 -9.63344 -9.32482 -8.51316 -6.00002 -0.68727 0.28955 0.33414 0.49189 0.77409 1.26439 1.29612 1.33764 1.42490 1.55147 1.91667 2.25698 2.38607 2.64878 2.83724 3.07454 3.11040 3.16382 3.38199 3.60112 3.80962 3.90388 3.97563 4.10387 4.16027 4.22564 4.25147 4.35563 4.40896 4.45764 4.57352 4.93134 5.01874 5.10119 5.27153 5.35469 5.36535 5.38603 5.49108 5.64871 5.92020 5.99218 6.13252 6.49375 6.59015 6.61687 7.06469 7.45241 7.99634 8.65155 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.002467 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.924635 B =11349.278998 C =12024.161787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.006 4.006 3 Si 0.989 3.011 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.333 4.333 8 H 0.076 0.924 9 N -0.556 5.556 10 C 0.422 3.578 11 O -0.632 6.632 12 C 0.093 3.907 13 N -0.518 5.518 14 C 0.441 3.559 15 N -0.546 5.546 16 C 0.341 3.659 17 C -0.367 4.367 18 C 0.134 3.866 19 N -0.284 5.284 20 N -0.313 5.313 21 C 0.114 3.886 22 C -0.125 4.125 23 C -0.099 4.099 24 C -0.110 4.110 25 C -0.101 4.101 26 C -0.120 4.120 27 C 0.572 3.428 28 O -0.551 6.551 29 H 0.280 0.720 30 H 0.402 0.598 31 H 0.123 0.877 32 H 0.179 0.821 33 H 0.264 0.736 34 H 0.224 0.776 35 H 0.122 0.878 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 -21.955 8.764 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.207 4.207 3 Si 0.813 3.187 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.463 4.463 8 H 0.094 0.906 9 N -0.192 5.192 10 C 0.208 3.792 11 O -0.520 6.520 12 C -0.032 4.032 13 N -0.236 5.236 14 C 0.154 3.846 15 N -0.272 5.272 16 C 0.105 3.895 17 C -0.383 4.383 18 C -0.056 4.056 19 N -0.100 5.100 20 N -0.091 5.091 21 C 0.024 3.976 22 C -0.145 4.145 23 C -0.118 4.118 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.140 4.140 27 C 0.367 3.633 28 O -0.428 6.428 29 H 0.089 0.911 30 H 0.237 0.763 31 H 0.141 0.859 32 H 0.196 0.804 33 H 0.279 0.721 34 H 0.240 0.760 35 H 0.140 0.860 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.554 -22.961 8.592 25.377 hybrid contribution -0.903 2.252 -1.271 2.739 sum 5.651 -20.709 7.321 22.680 Atomic orbital electron populations 1.69648 1.06607 1.29480 1.49343 1.25973 0.96528 1.02214 0.95960 0.84928 0.77944 0.77379 0.78448 1.20189 1.19904 1.19083 1.19623 0.92588 0.83834 1.50260 0.90585 1.41788 1.09608 1.04311 1.63524 1.20864 0.88292 0.86375 0.83670 1.90566 1.15940 1.87810 1.57642 1.21875 0.90242 0.81285 1.09770 1.46313 1.39744 1.30179 1.07380 1.25842 0.83794 0.84335 0.90584 1.67340 1.17622 1.14559 1.27670 1.19300 0.90311 0.89213 0.90683 1.21188 1.14049 1.07696 0.95377 1.24010 0.90562 0.89588 1.01422 1.77312 1.24080 1.24283 0.84373 1.45683 1.33610 1.24951 1.04820 1.17935 1.00304 0.91289 0.88022 1.21197 0.99311 1.00926 0.93089 1.21377 0.97022 0.94587 0.98803 1.21725 0.98500 0.94718 0.97882 1.21428 0.96602 1.01285 0.92602 1.21130 1.00843 0.90789 1.01259 1.17622 0.80302 0.81877 0.83450 1.90842 1.59575 1.63068 1.29345 0.91051 0.76285 0.85862 0.80363 0.72095 0.76014 0.86002 0.82494 0.81801 0.82063 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.52 13.05 21.66 0.28 -46.23 16 2 C -0.01 -0.29 5.50 84.93 0.47 0.18 16 3 Si 0.99 41.63 29.55 68.60 2.03 43.66 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.33 -18.08 9.68 84.04 0.81 -17.27 16 8 H 0.08 4.50 7.16 -2.91 -0.02 4.47 16 9 N -0.56 -26.26 5.29 -306.98 -1.62 -27.89 16 10 C 0.42 18.31 7.85 87.66 0.69 19.00 16 11 O -0.63 -33.56 16.01 -3.06 -0.05 -33.61 16 12 C 0.09 2.70 5.85 85.63 0.50 3.20 16 13 N -0.52 -15.90 2.09 -652.61 -1.36 -17.27 16 14 C 0.44 10.72 11.42 180.17 2.06 12.78 16 15 N -0.55 -15.33 9.50 -196.29 -1.86 -17.19 16 16 C 0.34 11.08 7.52 133.80 1.01 12.09 16 17 C -0.37 -12.83 6.39 -20.05 -0.13 -12.95 16 18 C 0.13 4.13 12.04 85.51 1.03 5.16 16 19 N -0.28 -8.82 12.22 -56.61 -0.69 -9.51 16 20 N -0.31 -9.74 3.75 -185.33 -0.70 -10.43 16 21 C 0.11 2.99 6.40 38.13 0.24 3.24 16 22 C -0.12 -2.86 9.38 22.39 0.21 -2.65 16 23 C -0.10 -1.53 10.04 22.25 0.22 -1.31 16 24 C -0.11 -1.30 10.04 22.29 0.22 -1.08 16 25 C -0.10 -1.39 10.04 22.25 0.22 -1.16 16 26 C -0.12 -2.51 9.76 22.39 0.22 -2.29 16 27 C 0.57 21.57 7.66 86.24 0.66 22.23 16 28 O -0.55 -24.19 16.86 -4.76 -0.08 -24.27 16 29 H 0.28 13.38 8.31 -92.70 -0.77 12.61 16 30 H 0.40 17.51 7.90 -92.71 -0.73 16.78 16 31 H 0.12 3.57 7.48 -2.39 -0.02 3.55 16 32 H 0.18 2.88 8.00 -2.39 -0.02 2.86 16 33 H 0.26 3.31 8.00 -2.91 -0.02 3.29 16 34 H 0.22 5.41 8.06 -2.91 -0.02 5.38 16 35 H 0.12 3.10 7.21 -2.91 -0.02 3.08 16 36 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -81.85 353.56 4.78 -77.07 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.40 Total: 26.51 kcal Atomic # 6 Polarization: 30.72 SS G_CDS: 8.44 Total: 39.16 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -5.96 Total: -128.52 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -0.13 Total: -57.88 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -81.85 4.78 -77.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126811750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.261 kcal (2) G-P(sol) polarization free energy of solvation -81.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds