Wall clock time and date at job start Tue Mar 31 2020 22:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30054 * 126.18330 * 2 1 4 4 O 1.21294 * 110.46878 * 179.86357 * 3 2 1 5 5 C 1.34189 * 109.69183 * 0.40092 * 4 3 2 6 6 C 1.47840 * 126.67172 * 179.77378 * 5 4 3 7 7 C 1.39655 * 119.99836 * 179.69762 * 6 5 4 8 8 C 1.37699 * 120.00080 * 179.76341 * 7 6 5 9 9 C 1.39663 * 119.99997 * 0.48987 * 8 7 6 10 10 C 1.47838 * 120.00383 * 179.78579 * 9 8 7 11 11 O 1.21581 * 120.00149 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00225 * 359.97438 * 10 9 8 13 13 C 1.40499 * 120.00238 * 180.02562 * 12 10 9 14 14 C 1.40673 * 126.08706 * 359.68940 * 13 12 10 15 15 N 1.30904 * 108.38518 * 179.87892 * 14 13 12 16 16 N 1.40065 * 108.41182 * 0.38281 * 15 14 13 17 17 C 1.37316 * 126.05988 * 179.71873 * 16 15 14 18 18 H 1.08005 * 119.99809 * 174.17730 * 17 16 15 19 19 C 1.38992 * 120.00598 * 354.17965 * 17 16 15 20 20 N 1.31298 * 119.99485 * 5.93879 * 19 17 16 21 21 Si 1.86793 * 120.00392 * 185.94207 * 19 17 16 22 22 H 1.48502 * 109.47328 * 94.97416 * 21 19 17 23 23 H 1.48496 * 109.47398 * 214.98391 * 21 19 17 24 24 H 1.48511 * 109.47002 * 334.97922 * 21 19 17 25 25 C 1.35706 * 126.08621 * 180.02562 * 13 12 10 26 26 C 1.39662 * 119.99485 * 359.76626 * 9 8 7 27 27 C 1.37703 * 119.99880 * 359.97438 * 26 9 8 28 28 N 1.32096 * 106.65587 * 359.75217 * 5 4 3 29 29 H 1.08993 * 109.47102 * 269.68787 * 1 2 3 30 30 H 1.08999 * 109.47193 * 29.69607 * 1 2 3 31 31 H 1.09009 * 109.46437 * 149.68888 * 1 2 3 32 32 H 1.08005 * 119.99897 * 0.02562 * 7 6 5 33 33 H 1.08000 * 120.00306 * 180.25730 * 8 7 6 34 34 H 0.97000 * 119.99303 * 0.02562 * 12 10 9 35 35 H 1.08000 * 125.80600 * 0.02562 * 14 13 12 36 36 H 0.96996 * 119.99633 * 179.97438 * 20 19 17 37 37 H 1.08001 * 126.24771 * 359.92141 * 25 13 12 38 38 H 1.08001 * 120.00350 * 179.97438 * 26 9 8 39 39 H 1.08000 * 119.99724 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0497 0.0000 4 8 3.4424 0.7212 0.0027 5 6 3.5355 -0.6174 -0.0041 6 6 4.7797 -1.4160 -0.0083 7 6 4.7141 -2.8110 -0.0089 8 6 5.8728 -3.5548 -0.0178 9 6 7.1139 -2.9142 -0.0157 10 6 8.3580 -3.7127 -0.0204 11 8 9.4384 -3.1550 -0.0191 12 7 8.2948 -5.0590 -0.0261 13 6 9.4772 -5.8179 -0.0300 14 6 10.7885 -5.3087 -0.0347 15 7 11.6230 -6.3172 -0.0348 16 7 10.8811 -7.5053 -0.0389 17 6 11.3946 -8.7788 -0.0457 18 1 10.7336 -9.6280 0.0464 19 6 12.7648 -8.9752 -0.1711 20 7 13.5788 -7.9449 -0.1657 21 14 13.4484 -10.7046 -0.3473 22 1 13.6291 -11.0212 -1.7868 23 1 14.7580 -10.7924 0.3472 24 1 12.5012 -11.6752 0.2579 25 6 9.5575 -7.1725 -0.0364 26 6 7.1795 -1.5191 -0.0096 27 6 6.0206 -0.7754 -0.0062 28 7 2.2993 -1.0829 -0.0058 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 0.8927 -0.5091 31 1 -0.3632 -0.8873 -0.5187 32 1 3.7543 -3.3064 -0.0068 33 1 5.8221 -4.6336 -0.0225 34 1 7.4328 -5.5039 -0.0275 35 1 11.0605 -4.2635 -0.0356 36 1 14.5350 -8.0819 -0.2528 37 1 8.7258 -7.8615 -0.0381 38 1 8.1391 -1.0236 -0.0076 39 1 6.0713 0.3034 -0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139485987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:08 Heat of formation + Delta-G solvation = 127.314606 kcal Electronic energy + Delta-G solvation = -26523.716178 eV Core-core repulsion = 22436.095744 eV Total energy + Delta-G solvation = -4087.620434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.63935 -41.82657 -40.86915 -39.38094 -37.18927 -36.00872 -35.11513 -34.65055 -32.41460 -32.14452 -31.81071 -30.11293 -29.52182 -27.08208 -26.04071 -24.78244 -23.63608 -22.94513 -22.59899 -21.78102 -21.14757 -19.42898 -19.26851 -19.19299 -18.51547 -17.44622 -17.36373 -17.01116 -16.26760 -16.18071 -15.79294 -15.58068 -15.11618 -15.10246 -14.82300 -14.76138 -14.52911 -14.49732 -14.04300 -14.00527 -13.49710 -13.33013 -13.28517 -13.26755 -12.95587 -12.78623 -12.57952 -12.23472 -12.14873 -12.05492 -11.87173 -11.41513 -11.02486 -10.88297 -10.76747 -10.14071 -10.09357 -9.88736 -8.52200 -8.46172 -6.22946 -0.95848 0.26397 0.32470 1.09163 1.30208 1.41662 1.52896 1.59623 1.65532 1.91682 2.01697 2.25493 2.45009 2.50109 2.83069 2.91004 2.97507 3.10085 3.63403 3.73479 3.81250 3.87471 4.14557 4.26250 4.40764 4.46069 4.53941 4.58836 4.61383 4.66488 4.79806 4.93257 5.01885 5.05549 5.06693 5.10880 5.17817 5.28256 5.32068 5.43577 5.61720 5.97444 6.32025 6.69653 6.74854 7.00063 7.32077 7.47976 7.69189 8.53408 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.040951 B = 0.001734 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.573192 B =16142.442284 C =16806.032989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.170 3.830 3 N -0.408 5.408 4 O 0.076 5.924 5 C 0.232 3.768 6 C -0.021 4.021 7 C -0.059 4.059 8 C -0.081 4.081 9 C -0.100 4.100 10 C 0.535 3.465 11 O -0.571 6.571 12 N -0.604 5.604 13 C -0.048 4.048 14 C -0.056 4.056 15 N -0.312 5.312 16 N -0.168 5.168 17 C -0.354 4.354 18 H 0.142 0.858 19 C -0.006 4.006 20 N -0.824 5.824 21 Si 1.018 2.982 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.242 1.242 25 C -0.075 4.075 26 C -0.070 4.070 27 C -0.074 4.074 28 N -0.487 5.487 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.420 0.580 35 H 0.168 0.832 36 H 0.276 0.724 37 H 0.192 0.808 38 H 0.142 0.858 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.155 9.535 0.070 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 N -0.119 5.119 4 O 0.020 5.980 5 C 0.015 3.985 6 C -0.023 4.023 7 C -0.079 4.079 8 C -0.100 4.100 9 C -0.104 4.104 10 C 0.324 3.676 11 O -0.451 6.451 12 N -0.249 5.249 13 C -0.154 4.154 14 C -0.232 4.232 15 N -0.144 5.144 16 N 0.063 4.937 17 C -0.485 4.485 18 H 0.160 0.840 19 C -0.218 4.218 20 N -0.452 5.452 21 Si 0.837 3.163 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.165 1.165 25 C -0.226 4.226 26 C -0.089 4.089 27 C -0.093 4.093 28 N -0.221 5.221 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.259 0.741 35 H 0.185 0.815 36 H 0.086 0.914 37 H 0.208 0.792 38 H 0.160 0.840 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -23.647 10.151 0.067 25.734 hybrid contribution -0.166 -0.232 -0.049 0.289 sum -23.813 9.919 0.018 25.796 Atomic orbital electron populations 1.20402 0.80059 1.05992 1.05758 1.26606 1.02193 0.82746 0.98672 1.74649 0.89436 1.24640 1.23145 1.85372 1.22353 1.24207 1.66094 1.26524 0.94706 0.81723 0.95553 1.17496 0.86369 0.92225 1.06221 1.21271 1.00024 0.90919 0.95666 1.21487 0.89677 1.01800 0.97007 1.20058 0.92257 0.94567 1.03548 1.18717 0.89468 0.81861 0.77532 1.90675 1.31262 1.71582 1.51573 1.42295 1.07175 1.05022 1.70432 1.17303 0.86562 0.89815 1.21762 1.24197 0.90936 0.99082 1.08955 1.78156 1.19357 0.89458 1.27440 1.44844 1.03032 1.05432 1.40363 1.20637 0.93795 0.80666 1.53434 0.84031 1.26876 0.96094 1.04605 0.94206 1.70402 1.04471 1.33213 1.37140 0.84584 0.78041 0.74695 0.78935 1.19249 1.20268 1.16467 1.22032 0.88430 0.94528 1.17579 1.21244 0.99680 0.92054 0.95962 1.21346 0.89470 1.01806 0.96720 1.72108 0.99279 1.29463 1.21244 0.87679 0.88278 0.87617 0.82045 0.81780 0.74092 0.81468 0.91420 0.79154 0.83985 0.82015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 71.24 0.75 0.21 16 2 C 0.17 2.96 8.20 138.53 1.14 4.10 16 3 N -0.41 -8.38 12.15 -58.65 -0.71 -9.09 16 4 O 0.08 1.50 11.12 69.75 0.78 2.28 16 5 C 0.23 4.25 8.01 87.32 0.70 4.95 16 6 C -0.02 -0.33 5.88 -20.05 -0.12 -0.45 16 7 C -0.06 -0.84 9.68 22.48 0.22 -0.62 16 8 C -0.08 -1.26 9.52 22.49 0.21 -1.05 16 9 C -0.10 -2.28 5.88 -20.05 -0.12 -2.39 16 10 C 0.54 17.62 7.74 86.78 0.67 18.29 16 11 O -0.57 -24.07 13.48 -3.97 -0.05 -24.13 16 12 N -0.60 -19.47 5.41 -306.52 -1.66 -21.13 16 13 C -0.05 -2.14 6.90 37.76 0.26 -1.87 16 14 C -0.06 -3.02 10.85 85.43 0.93 -2.09 16 15 N -0.31 -18.64 10.42 -56.45 -0.59 -19.23 16 16 N -0.17 -9.15 3.74 -190.00 -0.71 -9.86 16 17 C -0.35 -18.43 10.24 84.02 0.86 -17.57 16 18 H 0.14 6.33 7.84 -2.91 -0.02 6.30 16 19 C -0.01 -0.31 5.50 84.95 0.47 0.15 16 20 N -0.82 -47.30 11.84 21.66 0.26 -47.05 16 21 Si 1.02 38.06 29.56 68.60 2.03 40.09 16 22 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.24 -8.08 7.11 99.48 0.71 -7.37 16 25 C -0.08 -3.34 11.49 83.38 0.96 -2.38 16 26 C -0.07 -1.44 9.58 22.49 0.22 -1.23 16 27 C -0.07 -1.17 9.71 22.48 0.22 -0.95 16 28 N -0.49 -9.19 11.24 -302.77 -3.40 -12.59 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.16 1.78 7.87 -2.91 -0.02 1.76 16 33 H 0.16 1.64 6.39 -2.91 -0.02 1.62 16 34 H 0.42 9.24 6.84 -92.71 -0.63 8.61 16 35 H 0.17 9.06 5.91 -2.91 -0.02 9.05 16 36 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.19 6.46 8.06 -2.91 -0.02 6.44 16 38 H 0.14 3.11 7.64 -2.91 -0.02 3.09 16 39 H 0.16 1.85 7.94 -2.91 -0.02 1.82 16 Total: -1.00 -79.17 351.16 3.80 -75.37 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.51 Total: 28.24 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 7.36 Total: -2.91 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -6.82 Total: -118.95 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.72 Total: -21.85 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -79.17 3.80 -75.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139485987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.689 kcal (2) G-P(sol) polarization free energy of solvation -79.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds