Wall clock time and date at job start Tue Mar 31 2020 22:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.50697 * 109.47146 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00267 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99820 * 179.97438 * 4 3 2 7 7 C 1.39974 * 119.99901 * 185.27403 * 6 4 3 8 8 C 1.38917 * 120.02440 * 33.48300 * 7 6 4 9 9 C 1.38170 * 120.08547 * 180.25508 * 8 7 6 10 10 C 1.38240 * 120.12507 * 359.49384 * 9 8 7 11 11 Cl 1.73608 * 119.97389 * 180.23289 * 10 9 8 12 12 C 1.39020 * 120.05216 * 0.24889 * 10 9 8 13 13 N 1.39746 * 120.04742 * 180.02562 * 12 10 9 14 14 C 1.46498 * 120.00246 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47066 * 180.02562 * 14 13 12 16 16 O 1.21290 * 120.00005 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99791 * 180.02562 * 15 14 13 18 18 C 1.37087 * 119.99732 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00738 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99908 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00081 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47285 * 89.99580 * 22 20 18 24 24 H 1.48492 * 109.47267 * 209.99960 * 22 20 18 25 25 H 1.48505 * 109.47122 * 329.99694 * 22 20 18 26 26 C 1.38735 * 120.02241 * 213.23130 * 7 6 4 27 27 H 1.09007 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47184 * 299.99953 * 1 2 3 29 29 H 1.09000 * 109.47197 * 60.00324 * 1 2 3 30 30 H 1.08999 * 109.47399 * 239.99323 * 2 1 3 31 31 H 1.09000 * 109.47197 * 119.99676 * 2 1 3 32 32 H 1.09004 * 109.47228 * 59.99763 * 3 2 1 33 33 H 1.09000 * 109.46835 * 299.99898 * 3 2 1 34 34 H 0.96996 * 120.00195 * 5.27658 * 6 4 3 35 35 H 1.08005 * 119.95918 * 359.97438 * 8 7 6 36 36 H 1.07997 * 119.93536 * 179.76474 * 9 8 7 37 37 H 0.97000 * 119.99760 * 0.02562 * 13 12 10 38 38 H 1.08996 * 109.47295 * 300.00984 * 14 13 12 39 39 H 1.09007 * 109.46804 * 60.00229 * 14 13 12 40 40 H 0.97001 * 120.00083 * 359.97438 * 17 15 14 41 41 H 0.97003 * 119.99520 * 179.97438 * 21 20 18 42 42 H 1.08009 * 120.06187 * 0.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2208 2.6097 0.0002 7 6 5.6161 2.6123 -0.1106 8 6 6.2547 1.6415 -0.8719 9 6 7.6323 1.6397 -0.9779 10 6 8.3789 2.6097 -0.3355 11 17 10.1092 2.6072 -0.4763 12 6 7.7452 3.5869 0.4235 13 7 8.4999 4.5678 1.0724 14 6 7.8312 5.5968 1.8724 15 6 8.8624 6.5253 2.4601 16 8 10.0402 6.3450 2.2334 17 7 8.4760 7.5556 3.2385 18 6 9.4141 8.4005 3.7726 19 1 10.4628 8.2405 3.5702 20 6 9.0157 9.4630 4.5747 21 7 7.7397 9.6581 4.8207 22 14 10.2939 10.6148 5.3020 23 1 10.5387 11.7390 4.3631 24 1 9.7993 11.1494 6.5960 25 1 11.5601 9.8716 5.5251 26 6 6.3620 3.5874 0.5355 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7388 3.4480 0.0768 35 1 5.6739 0.8845 -1.3780 36 1 8.1265 0.8816 -1.5674 37 1 9.4667 4.5673 0.9931 38 1 7.1506 6.1648 1.2382 39 1 7.2681 5.1229 2.6766 40 1 7.5341 7.6996 3.4201 41 1 7.4617 10.3997 5.3809 42 1 5.8671 4.3452 1.1250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161753324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:45 Heat of formation + Delta-G solvation = -65.095647 kcal Electronic energy + Delta-G solvation = -25643.101128 eV Core-core repulsion = 21648.244653 eV Total energy + Delta-G solvation = -3994.856475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75660 -39.23081 -38.28344 -36.37855 -35.63076 -34.70952 -34.41397 -33.91781 -31.44014 -30.18494 -29.71629 -28.03183 -26.66794 -24.53206 -23.34498 -22.30687 -21.60050 -20.29466 -19.51960 -18.38576 -18.00624 -17.33829 -16.59954 -16.34286 -16.26604 -15.56252 -15.01228 -14.92737 -14.76182 -14.42767 -14.36587 -13.99522 -13.72879 -13.57682 -13.53774 -13.40335 -12.57088 -12.46504 -12.29920 -12.26529 -12.16724 -11.74860 -11.66015 -11.57031 -11.45252 -11.17284 -11.12766 -10.72869 -10.48941 -10.46800 -10.35012 -10.14043 -9.70769 -9.65470 -8.67467 -8.32540 -8.14720 -7.26841 -6.56279 -3.97774 1.11275 1.56813 2.35034 2.37343 2.76342 3.08741 3.19494 3.24688 3.53399 3.67785 3.76885 4.09035 4.29572 4.47570 4.59857 4.78395 4.79719 5.00410 5.08755 5.11594 5.20379 5.24411 5.30943 5.33184 5.41236 5.52288 5.64801 5.67234 5.76144 5.79523 5.91643 5.93404 6.03192 6.14411 6.25065 6.36559 6.78716 7.14137 7.31858 7.42310 7.85105 7.86620 7.96661 8.40936 9.00908 9.33988 9.82505 10.60709 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011352 B = 0.002400 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.906589 B =11663.141616 C =14011.908786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.511 3.489 5 O -0.516 6.516 6 N -0.675 5.675 7 C 0.198 3.802 8 C -0.179 4.179 9 C -0.041 4.041 10 C -0.132 4.132 11 Cl -0.073 7.073 12 C 0.258 3.742 13 N -0.715 5.715 14 C 0.110 3.890 15 C 0.428 3.572 16 O -0.591 6.591 17 N -0.550 5.550 18 C -0.304 4.304 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.896 5.896 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.268 1.268 26 C -0.223 4.223 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.412 0.588 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.417 0.583 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.395 0.605 41 H 0.274 0.726 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 -14.496 -10.782 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.180 4.180 4 C 0.299 3.701 5 O -0.390 6.390 6 N -0.320 5.320 7 C 0.103 3.897 8 C -0.201 4.201 9 C -0.061 4.061 10 C -0.164 4.164 11 Cl -0.045 7.045 12 C 0.149 3.851 13 N -0.346 5.346 14 C -0.018 4.018 15 C 0.214 3.786 16 O -0.477 6.477 17 N -0.185 5.185 18 C -0.433 4.433 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.759 3.241 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.249 4.249 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.248 0.752 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.258 0.742 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.228 0.772 41 H 0.084 0.916 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.384 -15.051 -10.681 22.798 hybrid contribution 0.207 1.315 0.621 1.469 sum -13.177 -13.736 -10.060 21.529 Atomic orbital electron populations 1.21794 0.95319 1.02095 1.01868 1.21296 0.95419 0.94404 1.03743 1.21751 0.90752 1.00675 1.04833 1.20972 0.90611 0.83213 0.75286 1.90742 1.70236 1.31065 1.46982 1.43630 1.05354 1.09998 1.72972 1.17418 0.82197 0.95656 0.94382 1.20688 0.93679 1.01991 1.03753 1.20612 0.92956 0.95894 0.96657 1.20305 0.84604 1.01894 1.09592 1.98345 1.10641 1.98215 1.97257 1.17201 0.90240 0.87591 0.90073 1.44692 1.10011 1.27756 1.52117 1.21008 0.95454 0.90106 0.95244 1.19691 0.89342 0.84617 0.84985 1.90526 1.18112 1.74605 1.64416 1.41779 1.10191 1.24157 1.42401 1.19733 0.91080 1.05955 1.26550 0.87687 1.25313 0.97024 0.98168 0.97200 1.69604 1.14563 1.31376 1.38130 0.85811 0.80218 0.79835 0.78192 1.20244 1.20777 1.19296 1.20210 0.91252 1.04854 1.08601 0.92324 0.92582 0.92630 0.91129 0.91080 0.88506 0.88462 0.75224 0.84730 0.84976 0.74215 0.90397 0.90414 0.77171 0.91613 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.11 -0.72 5.22 -26.73 -0.14 -0.86 16 3 C -0.14 -0.78 5.70 -27.89 -0.16 -0.94 16 4 C 0.51 4.83 7.57 -10.99 -0.08 4.74 16 5 O -0.52 -6.87 13.67 5.55 0.08 -6.79 16 6 N -0.67 -5.96 5.34 -9.87 -0.05 -6.02 16 7 C 0.20 2.38 6.27 -83.70 -0.53 1.86 16 8 C -0.18 -2.27 8.65 -39.36 -0.34 -2.61 16 9 C -0.04 -0.53 9.81 -39.61 -0.39 -0.92 16 10 C -0.13 -1.91 6.34 -39.29 -0.25 -2.15 16 11 Cl -0.07 -1.07 27.58 -51.86 -1.43 -2.50 16 12 C 0.26 3.87 6.65 -83.76 -0.56 3.32 16 13 N -0.72 -12.12 5.66 -59.80 -0.34 -12.46 16 14 C 0.11 1.86 5.39 -5.19 -0.03 1.83 16 15 C 0.43 9.67 7.85 -10.98 -0.09 9.58 16 16 O -0.59 -15.45 15.24 5.55 0.08 -15.37 16 17 N -0.55 -13.26 5.29 -10.96 -0.06 -13.32 16 18 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 19 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.36 13.05 55.50 0.72 -22.64 16 22 Si 0.93 20.39 29.55 -169.99 -5.02 15.36 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 C -0.22 -2.86 9.22 -39.20 -0.36 -3.22 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.41 2.30 8.82 -40.82 -0.36 1.94 16 35 H 0.13 1.70 6.42 -52.48 -0.34 1.37 16 36 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.42 7.85 6.10 -40.82 -0.25 7.60 16 38 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 39 H 0.08 1.17 7.95 -51.92 -0.41 0.76 16 40 H 0.39 8.94 7.90 -40.82 -0.32 8.62 16 41 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.13 1.49 6.73 -52.48 -0.35 1.14 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -31.99 372.79 -8.53 -40.52 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -5.34 Total: 15.07 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.79 Total: 2.51 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.28 Total: -54.43 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.43 Total: -2.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.99 -8.53 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161753324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.577 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds