Wall clock time and date at job start Tue Mar 31 2020 22:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.50697 * 109.47146 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00267 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99820 * 179.97438 * 4 3 2 7 7 C 1.39974 * 119.99901 * 185.27403 * 6 4 3 8 8 C 1.38917 * 120.02440 * 33.48300 * 7 6 4 9 9 C 1.38170 * 120.08547 * 180.25508 * 8 7 6 10 10 C 1.38240 * 120.12507 * 359.49384 * 9 8 7 11 11 Cl 1.73608 * 119.97389 * 180.23289 * 10 9 8 12 12 C 1.39020 * 120.05216 * 0.24889 * 10 9 8 13 13 N 1.39746 * 120.04742 * 180.02562 * 12 10 9 14 14 C 1.46498 * 120.00246 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47066 * 180.02562 * 14 13 12 16 16 O 1.21290 * 120.00005 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99791 * 180.02562 * 15 14 13 18 18 C 1.37087 * 119.99732 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00738 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99908 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00081 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47285 * 89.99580 * 22 20 18 24 24 H 1.48492 * 109.47267 * 209.99960 * 22 20 18 25 25 H 1.48505 * 109.47122 * 329.99694 * 22 20 18 26 26 C 1.38735 * 120.02241 * 213.23130 * 7 6 4 27 27 H 1.09007 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47184 * 299.99953 * 1 2 3 29 29 H 1.09000 * 109.47197 * 60.00324 * 1 2 3 30 30 H 1.08999 * 109.47399 * 239.99323 * 2 1 3 31 31 H 1.09000 * 109.47197 * 119.99676 * 2 1 3 32 32 H 1.09004 * 109.47228 * 59.99763 * 3 2 1 33 33 H 1.09000 * 109.46835 * 299.99898 * 3 2 1 34 34 H 0.96996 * 120.00195 * 5.27658 * 6 4 3 35 35 H 1.08005 * 119.95918 * 359.97438 * 8 7 6 36 36 H 1.07997 * 119.93536 * 179.76474 * 9 8 7 37 37 H 0.97000 * 119.99760 * 0.02562 * 13 12 10 38 38 H 1.08996 * 109.47295 * 300.00984 * 14 13 12 39 39 H 1.09007 * 109.46804 * 60.00229 * 14 13 12 40 40 H 0.97001 * 120.00083 * 359.97438 * 17 15 14 41 41 H 0.97003 * 119.99520 * 179.97438 * 21 20 18 42 42 H 1.08009 * 120.06187 * 0.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2208 2.6097 0.0002 7 6 5.6161 2.6123 -0.1106 8 6 6.2547 1.6415 -0.8719 9 6 7.6323 1.6397 -0.9779 10 6 8.3789 2.6097 -0.3355 11 17 10.1092 2.6072 -0.4763 12 6 7.7452 3.5869 0.4235 13 7 8.4999 4.5678 1.0724 14 6 7.8312 5.5968 1.8724 15 6 8.8624 6.5253 2.4601 16 8 10.0402 6.3450 2.2334 17 7 8.4760 7.5556 3.2385 18 6 9.4141 8.4005 3.7726 19 1 10.4628 8.2405 3.5702 20 6 9.0157 9.4630 4.5747 21 7 7.7397 9.6581 4.8207 22 14 10.2939 10.6148 5.3020 23 1 10.5387 11.7390 4.3631 24 1 9.7993 11.1494 6.5960 25 1 11.5601 9.8716 5.5251 26 6 6.3620 3.5874 0.5355 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7388 3.4480 0.0768 35 1 5.6739 0.8845 -1.3780 36 1 8.1265 0.8816 -1.5674 37 1 9.4667 4.5673 0.9931 38 1 7.1506 6.1648 1.2382 39 1 7.2681 5.1229 2.6766 40 1 7.5341 7.6996 3.4201 41 1 7.4617 10.3997 5.3809 42 1 5.8671 4.3452 1.1250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161753324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:44 Heat of formation + Delta-G solvation = -86.637219 kcal Electronic energy + Delta-G solvation = -25644.035241 eV Core-core repulsion = 21648.244653 eV Total energy + Delta-G solvation = -3995.790587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62299 -40.52738 -39.74977 -37.43169 -36.82039 -36.00022 -35.28928 -35.17694 -33.37948 -31.14962 -30.85414 -28.73301 -28.01517 -26.24161 -24.13536 -23.41199 -22.28445 -21.29918 -21.00024 -20.05190 -19.31880 -18.15938 -17.68089 -17.59036 -17.19688 -16.83777 -16.39909 -16.29768 -16.11095 -15.68804 -15.36437 -15.10235 -14.81172 -14.79263 -14.73145 -13.98515 -13.90556 -13.78163 -13.55643 -13.44279 -12.99960 -12.94489 -12.75348 -12.60550 -12.50164 -12.46405 -12.14522 -11.99796 -11.82399 -11.60653 -11.58225 -11.50815 -11.00582 -10.66454 -10.54922 -10.09457 -9.29171 -8.52256 -8.41357 -6.01197 0.12020 0.51979 1.28024 1.35123 1.41787 1.53397 1.60298 1.91931 1.97824 2.20729 2.40134 2.75335 3.14290 3.15280 3.68480 3.81342 4.02309 4.14898 4.16740 4.23542 4.32271 4.37875 4.42176 4.47012 4.59971 4.65366 4.74603 4.81263 4.89852 4.95727 5.18668 5.27108 5.28149 5.31906 5.37523 5.38788 5.50608 5.78396 5.90721 6.18161 6.45276 6.50427 6.59625 7.04715 7.15184 7.44732 7.97858 8.64433 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011352 B = 0.002400 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.906589 B =11663.141616 C =14011.908786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.131 4.131 4 C 0.508 3.492 5 O -0.559 6.559 6 N -0.663 5.663 7 C 0.201 3.799 8 C -0.181 4.181 9 C -0.041 4.041 10 C -0.146 4.146 11 Cl -0.082 7.082 12 C 0.241 3.759 13 N -0.729 5.729 14 C 0.125 3.875 15 C 0.427 3.573 16 O -0.631 6.631 17 N -0.558 5.558 18 C -0.337 4.337 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.912 5.912 22 Si 0.992 3.008 23 H -0.270 1.270 24 H -0.269 1.269 25 H -0.275 1.275 26 C -0.219 4.219 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.430 0.570 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.406 0.594 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.401 0.599 41 H 0.280 0.720 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 -14.028 -10.873 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.298 3.702 5 O -0.437 6.437 6 N -0.309 5.309 7 C 0.104 3.896 8 C -0.204 4.204 9 C -0.061 4.061 10 C -0.178 4.178 11 Cl -0.054 7.054 12 C 0.134 3.866 13 N -0.360 5.360 14 C -0.003 4.003 15 C 0.215 3.785 16 O -0.519 6.519 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.098 0.902 20 C -0.208 4.208 21 N -0.552 5.552 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.200 1.200 26 C -0.245 4.245 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.269 0.731 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.244 0.756 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.236 0.764 41 H 0.090 0.910 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.892 -14.573 -10.782 24.108 hybrid contribution 0.896 1.054 0.583 1.501 sum -14.996 -13.519 -10.199 22.620 Atomic orbital electron populations 1.21760 0.93758 1.02311 1.02802 1.21278 0.96693 0.94862 1.02163 1.21807 0.87487 1.00476 1.07244 1.21730 0.92115 0.82466 0.73855 1.90731 1.71349 1.32633 1.48960 1.43621 1.04076 1.10999 1.72236 1.17506 0.83773 0.94846 0.93427 1.20823 0.93674 1.02119 1.03753 1.20794 0.93108 0.95781 0.96395 1.20473 0.84321 1.02588 1.10401 1.98337 1.11469 1.98257 1.97321 1.17403 0.91030 0.87530 0.90644 1.44661 1.09525 1.28619 1.53208 1.20939 0.93690 0.89390 0.96247 1.20666 0.89967 0.84336 0.83560 1.90501 1.20473 1.75502 1.65398 1.41791 1.10059 1.24528 1.42987 1.19660 0.90697 1.07797 1.28532 0.90234 1.26025 0.98943 0.98913 0.96944 1.69648 1.15512 1.31853 1.38219 0.84941 0.77695 0.77875 0.77934 1.19569 1.19406 1.19964 1.20386 0.90392 1.05313 1.08387 0.92588 0.91750 0.91512 0.92581 0.92969 0.86079 0.85728 0.73072 0.84741 0.83440 0.75594 0.87548 0.88056 0.76415 0.91033 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.38 16 2 C -0.11 -1.28 5.22 30.59 0.16 -1.12 16 3 C -0.13 -1.07 5.70 29.85 0.17 -0.90 16 4 C 0.51 8.51 7.57 87.66 0.66 9.18 16 5 O -0.56 -14.42 13.67 -3.05 -0.04 -14.47 16 6 N -0.66 -9.87 5.34 -303.53 -1.62 -11.49 16 7 C 0.20 4.39 6.27 38.12 0.24 4.63 16 8 C -0.18 -4.38 8.65 22.42 0.19 -4.18 16 9 C -0.04 -1.02 9.81 22.25 0.22 -0.80 16 10 C -0.15 -4.15 6.34 22.46 0.14 -4.01 16 11 Cl -0.08 -2.43 27.58 -2.72 -0.08 -2.50 16 12 C 0.24 6.97 6.65 38.19 0.25 7.23 16 13 N -0.73 -24.26 5.66 -343.09 -1.94 -26.20 16 14 C 0.12 4.03 5.39 85.63 0.46 4.49 16 15 C 0.43 19.36 7.85 87.66 0.69 20.05 16 16 O -0.63 -33.83 15.24 -3.06 -0.05 -33.88 16 17 N -0.56 -27.02 5.29 -306.98 -1.62 -28.64 16 18 C -0.34 -18.44 9.68 84.04 0.81 -17.62 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 21 N -0.91 -46.82 13.05 21.67 0.28 -46.54 16 22 Si 0.99 41.50 29.55 68.60 2.03 43.53 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C -0.22 -5.12 9.22 22.52 0.21 -4.92 16 27 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.43 3.20 8.82 -92.71 -0.82 2.39 16 35 H 0.13 3.29 6.42 -2.91 -0.02 3.27 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.41 15.46 6.10 -92.71 -0.57 14.90 16 38 H 0.11 2.84 7.95 -2.39 -0.02 2.82 16 39 H 0.10 2.81 7.95 -2.38 -0.02 2.79 16 40 H 0.40 18.01 7.90 -92.71 -0.73 17.28 16 41 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 42 H 0.15 2.89 6.73 -2.91 -0.02 2.87 16 Total: -1.00 -70.80 372.79 1.33 -69.46 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.02 Total: 38.98 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.39 Total: 11.74 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -4.90 Total: -112.87 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.09 Total: -48.34 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.08 Total: -2.50 kcal Total: -70.80 1.33 -69.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161753324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.173 kcal (2) G-P(sol) polarization free energy of solvation -70.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds