Wall clock time and date at job start Tue Mar 31 2020 22:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99858 * 2 1 4 4 H 1.48500 * 109.47005 * 239.99879 * 3 2 1 5 5 H 1.48496 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47165 * 120.00292 * 3 2 1 7 7 C 1.37879 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00421 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99552 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46917 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00104 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00046 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99801 * 179.97438 * 12 11 10 15 15 H 1.09000 * 110.00030 * 319.64060 * 14 12 11 16 16 C 1.54324 * 109.88158 * 80.73712 * 14 12 11 17 17 C 1.55159 * 102.94330 * 141.60602 * 16 14 12 18 18 C 1.55127 * 101.48755 * 324.33267 * 17 16 14 19 19 N 1.47021 * 109.87980 * 198.54079 * 14 12 11 20 20 C 1.34773 * 125.64862 * 61.60629 * 19 14 12 21 21 O 1.21513 * 120.00102 * 0.02562 * 20 19 14 22 22 O 1.34639 * 120.00041 * 179.97438 * 20 19 14 23 23 C 1.45206 * 116.99892 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47129 * 180.02562 * 23 22 20 25 25 F 1.39898 * 109.47122 * 59.99730 * 24 23 22 26 26 F 1.39895 * 109.47045 * 179.97438 * 24 23 22 27 27 F 1.39901 * 109.46739 * 300.00037 * 24 23 22 28 28 H 0.97006 * 120.00189 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46895 * 60.00062 * 9 7 2 30 30 H 1.08994 * 109.46824 * 300.00402 * 9 7 2 31 31 H 1.08994 * 109.47462 * 59.99578 * 10 9 7 32 32 H 1.09003 * 109.46777 * 299.99878 * 10 9 7 33 33 H 1.09006 * 110.72106 * 259.97272 * 16 14 12 34 34 H 1.09000 * 110.72532 * 23.24461 * 16 14 12 35 35 H 1.08998 * 111.00168 * 82.57089 * 17 16 14 36 36 H 1.09005 * 111.00280 * 206.38202 * 17 16 14 37 37 H 1.08999 * 110.49569 * 278.45440 * 18 17 16 38 38 H 1.08992 * 110.34665 * 156.05465 * 18 17 16 39 39 H 1.09004 * 109.47122 * 299.99932 * 23 22 20 40 40 H 1.09000 * 109.47070 * 59.99958 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2504 -6.0453 -0.0007 13 8 3.4570 -5.9820 -0.0003 14 6 1.5662 -7.3880 -0.0007 15 1 0.7013 -7.3657 0.6623 16 6 1.1203 -7.7498 -1.4331 17 6 1.3974 -9.2746 -1.5087 18 6 2.6887 -9.3964 -0.6577 19 7 2.5070 -8.4285 0.4395 20 6 3.1083 -8.4850 1.6443 21 8 2.8871 -7.6259 2.4746 22 8 3.9534 -9.4940 1.9283 23 6 4.5643 -9.4911 3.2455 24 6 5.4863 -10.7044 3.3827 25 9 6.4852 -10.6440 2.4051 26 9 6.0754 -10.7014 4.6516 27 9 4.7416 -11.8771 3.2165 28 1 -0.4851 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.8720 -3.6043 0.8893 32 1 2.8719 -3.6042 -0.8906 33 1 0.0588 -7.5435 -1.5703 34 1 1.7170 -7.2124 -2.1702 35 1 0.5791 -9.8427 -1.0665 36 1 1.5774 -9.5884 -2.5369 37 1 3.5639 -9.1355 -1.2526 38 1 2.7866 -10.4065 -0.2600 39 1 5.1449 -8.5777 3.3748 40 1 3.7860 -9.5378 4.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170819976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:30 Heat of formation + Delta-G solvation = -315.026018 kcal Electronic energy + Delta-G solvation = -29744.228923 eV Core-core repulsion = 24723.675998 eV Total energy + Delta-G solvation = -5020.552925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.57518 -48.12926 -48.02496 -41.25444 -40.01975 -38.38891 -36.65076 -35.99727 -33.36427 -32.41425 -30.74404 -30.47745 -29.67170 -25.38464 -24.77498 -23.72625 -22.38388 -21.91054 -20.88357 -20.20705 -19.11498 -18.98269 -18.59856 -18.13499 -17.89967 -16.90854 -16.83643 -16.31027 -15.94390 -15.76968 -15.36237 -14.94080 -14.92417 -14.52077 -14.48278 -14.22775 -14.20144 -14.18936 -14.02362 -13.73243 -13.44652 -13.18189 -13.01823 -12.64312 -12.35626 -12.26583 -12.03131 -11.69766 -11.38570 -11.32396 -11.21170 -11.06270 -10.95397 -10.74417 -10.70777 -10.31595 -9.69983 -9.65652 -9.34786 -9.13507 -8.44404 -6.10688 -4.15080 1.16149 2.17663 2.40138 2.49015 2.97864 3.18310 3.30039 3.33845 3.36096 3.40341 3.49274 3.91783 4.07538 4.15053 4.38356 4.49210 4.55368 4.59121 4.80597 4.94943 5.09011 5.23893 5.25825 5.32930 5.44470 5.50382 5.53481 5.75353 5.78680 6.06452 6.10738 6.62759 6.94162 6.94938 7.54575 7.61921 7.80771 7.86454 8.14711 8.24434 8.90055 9.49212 11.00780 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.002388 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.864904 B =11723.442018 C =13056.454116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.077 3.923 11 O -0.353 6.353 12 C 0.449 3.551 13 O -0.505 6.505 14 C 0.164 3.836 15 H 0.119 0.881 16 C -0.118 4.118 17 C -0.130 4.130 18 C 0.101 3.899 19 N -0.583 5.583 20 C 0.678 3.322 21 O -0.549 6.549 22 O -0.353 6.353 23 C 0.041 3.959 24 C 0.467 3.533 25 F -0.172 7.172 26 F -0.168 7.168 27 F -0.174 7.174 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 -26.780 0.940 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.004 3.996 11 O -0.268 6.268 12 C 0.289 3.711 13 O -0.393 6.393 14 C 0.059 3.941 15 H 0.136 0.864 16 C -0.156 4.156 17 C -0.168 4.168 18 C -0.021 4.021 19 N -0.325 5.325 20 C 0.432 3.568 21 O -0.436 6.436 22 O -0.268 6.268 23 C -0.036 4.036 24 C 0.412 3.588 25 F -0.153 7.153 26 F -0.150 7.150 27 F -0.155 7.155 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.951 -26.363 1.348 26.857 hybrid contribution 0.903 0.933 0.226 1.318 sum 5.854 -25.430 1.574 26.142 Atomic orbital electron populations 1.69960 1.06083 1.27112 1.49700 1.24974 0.94920 0.99358 0.94834 0.86529 0.79493 0.82464 0.78799 1.20066 1.21092 1.20056 1.20941 0.93143 0.90130 1.52332 0.92342 1.19164 0.94151 0.88922 0.98894 1.23666 0.96422 0.78542 1.00931 1.86502 1.42264 1.15630 1.82401 1.23564 0.86853 0.87414 0.73230 1.90629 1.15629 1.88035 1.45056 1.21144 0.91008 0.82558 0.99359 0.86369 1.22669 1.03997 0.96660 0.92299 1.22873 0.97154 0.95579 1.01182 1.22546 0.99004 0.92814 0.87768 1.46709 1.46596 1.27433 1.11725 1.17145 0.77721 0.79693 0.82200 1.91106 1.65464 1.39823 1.47180 1.86132 1.57655 1.48573 1.34394 1.23947 0.97822 0.97043 0.84811 1.19965 0.80224 0.84419 0.74161 1.93250 1.63007 1.96435 1.62654 1.93243 1.84834 1.96608 1.40302 1.93234 1.76168 1.51024 1.95117 0.92636 0.95309 0.95296 0.92300 0.92358 0.87487 0.89355 0.89604 0.88671 0.90376 0.89306 0.86096 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 10 C 0.08 1.76 5.40 37.16 0.20 1.96 16 11 O -0.35 -7.14 10.22 -39.26 -0.40 -7.54 16 12 C 0.45 8.06 6.40 36.01 0.23 8.29 16 13 O -0.51 -10.47 15.88 -18.75 -0.30 -10.77 16 14 C 0.16 2.06 3.37 -68.10 -0.23 1.83 16 15 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 16 C -0.12 -0.98 6.46 -24.90 -0.16 -1.14 16 17 C -0.13 -0.73 7.10 -24.46 -0.17 -0.90 16 18 C 0.10 0.81 6.93 -2.41 -0.02 0.79 16 19 N -0.58 -7.15 2.75 -169.93 -0.47 -7.61 16 20 C 0.68 9.62 8.02 54.05 0.43 10.05 16 21 O -0.55 -9.62 15.94 -19.28 -0.31 -9.93 16 22 O -0.35 -4.05 9.65 -40.32 -0.39 -4.44 16 23 C 0.04 0.36 5.43 37.16 0.20 0.57 16 24 C 0.47 3.93 3.32 37.16 0.12 4.06 16 25 F -0.17 -1.68 17.26 2.25 0.04 -1.64 16 26 F -0.17 -1.38 17.32 2.25 0.04 -1.34 16 27 F -0.17 -1.55 17.26 2.25 0.04 -1.51 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.80 7.84 -51.93 -0.41 0.39 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.58 8.04 -51.93 -0.42 0.17 16 39 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -35.25 364.25 -5.51 -40.75 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -5.01 Total: -4.67 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 0.05 Total: 12.40 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.27 Total: -33.31 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.40 Total: -32.68 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.12 Total: -4.50 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.25 -5.51 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170819976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -274.271 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -309.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -315.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds