Wall clock time and date at job start Tue Mar 31 2020 22:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99858 * 2 1 4 4 H 1.48500 * 109.47005 * 239.99879 * 3 2 1 5 5 H 1.48496 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47165 * 120.00292 * 3 2 1 7 7 C 1.37879 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00421 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99552 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46917 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00104 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00046 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99801 * 179.97438 * 12 11 10 15 15 H 1.09000 * 110.00030 * 319.64060 * 14 12 11 16 16 C 1.54324 * 109.88158 * 80.73712 * 14 12 11 17 17 C 1.55159 * 102.94330 * 141.60602 * 16 14 12 18 18 C 1.55127 * 101.48755 * 324.33267 * 17 16 14 19 19 N 1.47021 * 109.87980 * 198.54079 * 14 12 11 20 20 C 1.34773 * 125.64862 * 61.60629 * 19 14 12 21 21 O 1.21513 * 120.00102 * 0.02562 * 20 19 14 22 22 O 1.34639 * 120.00041 * 179.97438 * 20 19 14 23 23 C 1.45206 * 116.99892 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47129 * 180.02562 * 23 22 20 25 25 F 1.39898 * 109.47122 * 59.99730 * 24 23 22 26 26 F 1.39895 * 109.47045 * 179.97438 * 24 23 22 27 27 F 1.39901 * 109.46739 * 300.00037 * 24 23 22 28 28 H 0.97006 * 120.00189 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46895 * 60.00062 * 9 7 2 30 30 H 1.08994 * 109.46824 * 300.00402 * 9 7 2 31 31 H 1.08994 * 109.47462 * 59.99578 * 10 9 7 32 32 H 1.09003 * 109.46777 * 299.99878 * 10 9 7 33 33 H 1.09006 * 110.72106 * 259.97272 * 16 14 12 34 34 H 1.09000 * 110.72532 * 23.24461 * 16 14 12 35 35 H 1.08998 * 111.00168 * 82.57089 * 17 16 14 36 36 H 1.09005 * 111.00280 * 206.38202 * 17 16 14 37 37 H 1.08999 * 110.49569 * 278.45440 * 18 17 16 38 38 H 1.08992 * 110.34665 * 156.05465 * 18 17 16 39 39 H 1.09004 * 109.47122 * 299.99932 * 23 22 20 40 40 H 1.09000 * 109.47070 * 59.99958 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2504 -6.0453 -0.0007 13 8 3.4570 -5.9820 -0.0003 14 6 1.5662 -7.3880 -0.0007 15 1 0.7013 -7.3657 0.6623 16 6 1.1203 -7.7498 -1.4331 17 6 1.3974 -9.2746 -1.5087 18 6 2.6887 -9.3964 -0.6577 19 7 2.5070 -8.4285 0.4395 20 6 3.1083 -8.4850 1.6443 21 8 2.8871 -7.6259 2.4746 22 8 3.9534 -9.4940 1.9283 23 6 4.5643 -9.4911 3.2455 24 6 5.4863 -10.7044 3.3827 25 9 6.4852 -10.6440 2.4051 26 9 6.0754 -10.7014 4.6516 27 9 4.7416 -11.8771 3.2165 28 1 -0.4851 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.8720 -3.6043 0.8893 32 1 2.8719 -3.6042 -0.8906 33 1 0.0588 -7.5435 -1.5703 34 1 1.7170 -7.2124 -2.1702 35 1 0.5791 -9.8427 -1.0665 36 1 1.5774 -9.5884 -2.5369 37 1 3.5639 -9.1355 -1.2526 38 1 2.7866 -10.4065 -0.2600 39 1 5.1449 -8.5777 3.3748 40 1 3.7860 -9.5378 4.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170819976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:30 Heat of formation + Delta-G solvation = -336.795378 kcal Electronic energy + Delta-G solvation = -29745.172913 eV Core-core repulsion = 24723.675998 eV Total energy + Delta-G solvation = -5021.496915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.29442 -48.83577 -48.76159 -42.34456 -41.33496 -39.41673 -37.69174 -37.60268 -35.48414 -33.26847 -32.46947 -31.33035 -30.78718 -27.19599 -25.79858 -24.62041 -23.68809 -22.73836 -22.56679 -21.35153 -19.86360 -19.83523 -19.50673 -19.30301 -18.85365 -18.43519 -17.88466 -17.79807 -17.58770 -17.08156 -16.57412 -16.21241 -15.69428 -15.65315 -15.29743 -15.20268 -15.00515 -14.93615 -14.91434 -14.84086 -14.50653 -14.39147 -14.31343 -14.07491 -13.55908 -13.26996 -13.10704 -13.04855 -12.87304 -12.61008 -12.59844 -12.30580 -12.27002 -12.11626 -11.96735 -11.76071 -11.56099 -11.54251 -11.37862 -10.62871 -10.17976 -8.28852 -6.42418 0.26034 1.03109 1.25657 1.39846 1.43151 1.47760 1.51254 1.75096 2.35292 2.39396 2.57782 2.78534 3.05269 3.18441 3.34436 3.38829 3.66208 3.79801 3.84379 3.94808 4.11814 4.15295 4.19846 4.40179 4.55859 4.59961 4.63604 4.74125 4.79108 5.00663 5.11611 5.21082 5.26825 5.43424 5.47614 5.70698 5.99072 6.04187 6.59586 6.70412 6.80190 7.27200 8.83524 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.002388 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.864904 B =11723.442018 C =13056.454116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.093 3.907 11 O -0.359 6.359 12 C 0.443 3.557 13 O -0.537 6.537 14 C 0.163 3.837 15 H 0.129 0.871 16 C -0.114 4.114 17 C -0.111 4.111 18 C 0.091 3.909 19 N -0.585 5.585 20 C 0.672 3.328 21 O -0.592 6.592 22 O -0.349 6.349 23 C 0.034 3.966 24 C 0.478 3.522 25 F -0.180 7.180 26 F -0.165 7.165 27 F -0.174 7.174 28 H 0.269 0.731 29 H 0.013 0.987 30 H 0.004 0.996 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -28.017 0.057 28.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.080 0.920 9 C -0.003 4.003 10 C 0.020 3.980 11 O -0.274 6.274 12 C 0.286 3.714 13 O -0.427 6.427 14 C 0.059 3.941 15 H 0.147 0.853 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.029 4.029 19 N -0.325 5.325 20 C 0.427 3.573 21 O -0.482 6.482 22 O -0.262 6.262 23 C -0.042 4.042 24 C 0.423 3.577 25 F -0.161 7.161 26 F -0.146 7.146 27 F -0.156 7.156 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.139 0.861 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.025 -27.658 0.439 28.114 hybrid contribution 0.899 1.220 0.526 1.604 sum 5.923 -26.438 0.966 27.110 Atomic orbital electron populations 1.70076 1.07738 1.28430 1.50112 1.25942 0.95866 1.03315 0.93953 0.85390 0.78247 0.77488 0.79274 1.18913 1.20199 1.19338 1.21330 0.93600 0.91346 1.52922 0.91991 1.18961 0.94211 0.90299 0.96866 1.23145 0.95166 0.79202 1.00510 1.86496 1.42373 1.15629 1.82925 1.24808 0.86824 0.88228 0.71545 1.90605 1.17134 1.88397 1.46530 1.21505 0.90579 0.79454 1.02575 0.85310 1.22807 1.05046 0.98657 0.88714 1.22922 0.96191 0.93355 1.02400 1.22890 1.00446 0.92638 0.86962 1.47005 1.45901 1.27701 1.11906 1.17419 0.77788 0.79576 0.82503 1.91070 1.66950 1.41469 1.48756 1.86118 1.57033 1.47460 1.35611 1.24168 0.98386 0.97376 0.84271 1.19763 0.79809 0.84068 0.74035 1.93237 1.63361 1.96455 1.63050 1.93253 1.84746 1.96571 1.40047 1.93234 1.76160 1.51033 1.95126 0.92208 0.96824 0.97723 0.93397 0.91973 0.85155 0.90237 0.87541 0.85893 0.90789 0.87456 0.86081 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.54 13.29 21.45 0.28 -55.26 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.85 5.35 29.85 0.16 2.01 16 10 C 0.09 4.39 5.40 71.98 0.39 4.78 16 11 O -0.36 -14.87 10.22 -51.42 -0.53 -15.40 16 12 C 0.44 16.10 6.40 71.24 0.46 16.56 16 13 O -0.54 -22.72 15.88 21.97 0.35 -22.37 16 14 C 0.16 3.94 3.37 44.60 0.15 4.09 16 15 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 16 C -0.11 -1.61 6.46 31.78 0.21 -1.40 16 17 C -0.11 -0.81 7.10 32.06 0.23 -0.58 16 18 C 0.09 1.24 6.93 86.93 0.60 1.84 16 19 N -0.58 -13.66 2.75 -921.94 -2.54 -16.20 16 20 C 0.67 18.90 8.02 129.79 1.04 19.94 16 21 O -0.59 -21.16 15.94 19.80 0.32 -20.84 16 22 O -0.35 -7.75 9.65 -55.49 -0.54 -8.29 16 23 C 0.03 0.60 5.43 71.98 0.39 0.99 16 24 C 0.48 7.61 3.32 71.98 0.24 7.85 16 25 F -0.18 -3.37 17.26 44.97 0.78 -2.60 16 26 F -0.16 -2.54 17.32 44.97 0.78 -1.77 16 27 F -0.17 -2.87 17.26 44.97 0.78 -2.09 16 28 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 29 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.05 2.33 8.13 -2.39 -0.02 2.31 16 32 H 0.06 2.85 8.13 -2.39 -0.02 2.83 16 33 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 1.29 7.84 -2.39 -0.02 1.27 16 35 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.09 8.04 -2.39 -0.02 1.07 16 39 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -78.06 364.25 7.34 -70.72 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.08 Total: 2.85 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 4.56 Total: 25.21 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -2.25 Total: -71.46 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: -0.40 Total: -66.89 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.33 Total: -6.46 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -78.06 7.34 -70.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170819976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -266.076 kcal (2) G-P(sol) polarization free energy of solvation -78.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -344.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -336.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds