Wall clock time and date at job start Tue Mar 31 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 11 11 O 1.45194 * 109.46822 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99946 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99637 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00102 * 179.97438 * 12 11 10 15 15 H 1.08995 * 110.32954 * 42.23609 * 14 12 11 16 16 C 1.54908 * 110.36587 * 279.99638 * 14 12 11 17 17 C 1.55157 * 101.58414 * 204.15386 * 16 14 12 18 18 C 1.54329 * 102.94156 * 35.50246 * 17 16 14 19 19 N 1.47028 * 107.26978 * 337.80910 * 18 17 16 20 20 C 1.34775 * 125.64562 * 178.98023 * 19 18 17 21 21 O 1.21517 * 119.99780 * 179.97438 * 20 19 18 22 22 O 1.34640 * 120.00172 * 359.94974 * 20 19 18 23 23 C 1.45195 * 116.99865 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47355 * 180.02562 * 23 22 20 25 25 F 1.39898 * 109.47194 * 59.99960 * 24 23 22 26 26 F 1.39895 * 109.47423 * 180.02562 * 24 23 22 27 27 F 1.39907 * 109.46854 * 300.00458 * 24 23 22 28 28 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 30 30 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 31 31 H 1.09008 * 109.46754 * 300.00121 * 10 9 7 32 32 H 1.08996 * 109.46647 * 60.00168 * 10 9 7 33 33 H 1.09000 * 111.00429 * 322.22792 * 16 14 12 34 34 H 1.08999 * 111.00446 * 86.07848 * 16 14 12 35 35 H 1.08996 * 110.72468 * 153.86184 * 17 16 14 36 36 H 1.08998 * 110.71877 * 277.13869 * 17 16 14 37 37 H 1.08999 * 109.88233 * 97.22262 * 18 17 16 38 38 H 1.09000 * 109.88318 * 218.23814 * 18 17 16 39 39 H 1.09003 * 109.47645 * 300.00931 * 23 22 20 40 40 H 1.09001 * 109.46850 * 60.00752 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 8 5.4735 -2.6365 0.0001 12 6 6.0829 -3.8325 -0.0003 13 8 5.4248 -4.8459 -0.0002 14 6 7.5879 -3.9114 -0.0009 15 1 8.0059 -3.1756 0.6861 16 6 8.1389 -3.6876 -1.4312 17 6 9.5118 -4.4060 -1.3521 18 6 9.2205 -5.6075 -0.4284 19 7 8.0306 -5.2689 0.3660 20 6 7.4426 -6.0670 1.2791 21 8 6.4590 -5.6814 1.8795 22 8 7.9447 -7.2917 1.5257 23 6 7.2605 -8.0962 2.5220 24 6 7.9705 -9.4440 2.6647 25 9 9.2946 -9.2335 3.0643 26 9 7.3110 -10.2194 3.6242 27 9 7.9550 -10.1116 1.4352 28 1 -0.4849 0.8401 -0.0004 29 1 3.8746 -0.6808 -0.8905 30 1 3.8752 -0.6797 0.8895 31 1 3.6585 -3.1502 0.8904 32 1 3.6579 -3.1505 -0.8897 33 1 7.4951 -4.1561 -2.1756 34 1 8.2653 -2.6252 -1.6394 35 1 9.8268 -4.7457 -2.3387 36 1 10.2639 -3.7529 -0.9097 37 1 9.0254 -6.4970 -1.0275 38 1 10.0710 -5.7836 0.2302 39 1 7.2728 -7.5763 3.4800 40 1 6.2288 -8.2600 2.2108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170819977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:33 Heat of formation + Delta-G solvation = -307.446718 kcal Electronic energy + Delta-G solvation = -29918.378362 eV Core-core repulsion = 24898.154101 eV Total energy + Delta-G solvation = -5020.224262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.56133 -48.11376 -48.01455 -41.26241 -39.94061 -38.43343 -36.62530 -35.96626 -33.31761 -32.40367 -30.97203 -30.51911 -29.90113 -25.54685 -24.79263 -23.68477 -22.39081 -21.82586 -20.65573 -20.27343 -19.10128 -18.96483 -18.59105 -18.20263 -17.75469 -17.03698 -16.78869 -16.53334 -16.00797 -15.80871 -15.17937 -14.92465 -14.90133 -14.47273 -14.30851 -14.28373 -14.21196 -14.18026 -14.17509 -13.70905 -13.64256 -13.27854 -13.05438 -12.72810 -12.47944 -12.28093 -12.09731 -11.82526 -11.49804 -11.33190 -11.28989 -11.20252 -10.86168 -10.66257 -10.47945 -9.98189 -9.92261 -9.68068 -9.34979 -9.14342 -8.62275 -6.12624 -4.13751 1.19507 2.20488 2.46161 2.53655 2.90332 3.18409 3.27271 3.34740 3.39175 3.40748 3.51196 3.93539 4.05268 4.12818 4.38475 4.49551 4.52742 4.61606 4.76479 4.82718 5.02918 5.20819 5.23535 5.28606 5.37951 5.49336 5.54457 5.67094 5.81183 5.97979 6.02240 6.46696 6.79089 6.97175 7.19973 7.23161 7.62694 7.89556 8.16370 8.40370 8.89375 9.46770 11.00058 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.002491 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.518012 B =11238.922192 C =12531.096469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.086 3.914 11 O -0.360 6.360 12 C 0.449 3.551 13 O -0.483 6.483 14 C 0.164 3.836 15 H 0.118 0.882 16 C -0.121 4.121 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.591 5.591 20 C 0.674 3.326 21 O -0.532 6.532 22 O -0.356 6.356 23 C 0.042 3.958 24 C 0.467 3.533 25 F -0.174 7.174 26 F -0.169 7.169 27 F -0.173 7.173 28 H 0.266 0.734 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.256 -15.134 0.735 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.046 4.046 10 C 0.013 3.987 11 O -0.276 6.276 12 C 0.288 3.712 13 O -0.368 6.368 14 C 0.060 3.940 15 H 0.135 0.865 16 C -0.159 4.159 17 C -0.167 4.167 18 C -0.018 4.018 19 N -0.334 5.334 20 C 0.427 3.573 21 O -0.417 6.417 22 O -0.271 6.271 23 C -0.035 4.035 24 C 0.412 3.588 25 F -0.156 7.156 26 F -0.150 7.150 27 F -0.154 7.154 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 24.476 -15.335 1.047 28.902 hybrid contribution 0.129 0.445 0.161 0.490 sum 24.605 -14.891 1.208 28.785 Atomic orbital electron populations 1.69899 1.06298 1.27196 1.50154 1.24942 0.94769 0.99188 0.94148 0.86740 0.80452 0.83252 0.78695 1.20062 1.21183 1.18728 1.20848 0.88298 0.95046 1.52304 0.90682 1.19622 0.96987 0.90129 0.97826 1.23374 0.71973 1.01506 1.01804 1.86429 1.26467 1.31565 1.83169 1.23092 0.90918 0.82825 0.74327 1.90682 1.66561 1.36447 1.43153 1.21443 0.89790 0.83264 0.99486 0.86481 1.22824 0.96596 1.03457 0.93038 1.22681 0.97155 0.96309 1.00538 1.22138 0.86747 0.98928 0.93964 1.46717 1.31006 1.15360 1.40349 1.17163 0.80881 0.79136 0.80086 1.91147 1.25103 1.74080 1.51334 1.86120 1.56103 1.27405 1.57425 1.23918 0.97514 0.87100 0.94989 1.19987 0.77609 0.86905 0.74283 1.93231 1.36829 1.94888 1.90634 1.93243 1.80832 1.76616 1.64300 1.93244 1.96259 1.82627 1.43309 0.92436 0.95832 0.95373 0.91627 0.91849 0.89447 0.87448 0.88886 0.89542 0.90582 0.90293 0.86294 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.53 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.20 4.42 -27.88 -0.12 -0.32 16 10 C 0.09 1.89 5.40 37.16 0.20 2.09 16 11 O -0.36 -6.85 10.22 -39.26 -0.40 -7.26 16 12 C 0.45 7.76 6.38 36.00 0.23 7.99 16 13 O -0.48 -9.92 13.52 -26.72 -0.36 -10.28 16 14 C 0.16 1.91 3.67 -67.57 -0.25 1.67 16 15 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.12 -0.94 6.49 -24.58 -0.16 -1.10 16 17 C -0.13 -0.63 6.95 -24.89 -0.17 -0.80 16 18 C 0.10 0.75 6.89 -3.06 -0.02 0.73 16 19 N -0.59 -6.89 3.14 -170.09 -0.53 -7.42 16 20 C 0.67 9.52 7.87 54.05 0.43 9.95 16 21 O -0.53 -9.56 13.52 -27.29 -0.37 -9.93 16 22 O -0.36 -4.08 9.72 -40.32 -0.39 -4.47 16 23 C 0.04 0.39 5.43 37.16 0.20 0.59 16 24 C 0.47 4.01 3.32 37.16 0.12 4.13 16 25 F -0.17 -1.59 17.26 2.25 0.04 -1.55 16 26 F -0.17 -1.43 17.32 2.25 0.04 -1.39 16 27 F -0.17 -1.68 17.26 2.25 0.04 -1.64 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 31 H 0.07 1.51 8.14 -51.92 -0.42 1.09 16 32 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 33 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -35.96 356.62 -5.43 -41.39 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -5.00 Total: -4.21 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 0.03 Total: 11.43 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.24 Total: -34.19 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.52 Total: -31.94 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.12 Total: -4.57 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.96 -5.43 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170819977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -266.055 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -302.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -307.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds