Wall clock time and date at job start Tue Mar 31 2020 22:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 11 11 O 1.45194 * 109.46822 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99946 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99637 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00102 * 179.97438 * 12 11 10 15 15 H 1.08995 * 110.32954 * 42.23609 * 14 12 11 16 16 C 1.54908 * 110.36587 * 279.99638 * 14 12 11 17 17 C 1.55157 * 101.58414 * 204.15386 * 16 14 12 18 18 C 1.54329 * 102.94156 * 35.50246 * 17 16 14 19 19 N 1.47028 * 107.26978 * 337.80910 * 18 17 16 20 20 C 1.34775 * 125.64562 * 178.98023 * 19 18 17 21 21 O 1.21517 * 119.99780 * 179.97438 * 20 19 18 22 22 O 1.34640 * 120.00172 * 359.94974 * 20 19 18 23 23 C 1.45195 * 116.99865 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47355 * 180.02562 * 23 22 20 25 25 F 1.39898 * 109.47194 * 59.99960 * 24 23 22 26 26 F 1.39895 * 109.47423 * 180.02562 * 24 23 22 27 27 F 1.39907 * 109.46854 * 300.00458 * 24 23 22 28 28 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 30 30 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 31 31 H 1.09008 * 109.46754 * 300.00121 * 10 9 7 32 32 H 1.08996 * 109.46647 * 60.00168 * 10 9 7 33 33 H 1.09000 * 111.00429 * 322.22792 * 16 14 12 34 34 H 1.08999 * 111.00446 * 86.07848 * 16 14 12 35 35 H 1.08996 * 110.72468 * 153.86184 * 17 16 14 36 36 H 1.08998 * 110.71877 * 277.13869 * 17 16 14 37 37 H 1.08999 * 109.88233 * 97.22262 * 18 17 16 38 38 H 1.09000 * 109.88318 * 218.23814 * 18 17 16 39 39 H 1.09003 * 109.47645 * 300.00931 * 23 22 20 40 40 H 1.09001 * 109.46850 * 60.00752 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 8 5.4735 -2.6365 0.0001 12 6 6.0829 -3.8325 -0.0003 13 8 5.4248 -4.8459 -0.0002 14 6 7.5879 -3.9114 -0.0009 15 1 8.0059 -3.1756 0.6861 16 6 8.1389 -3.6876 -1.4312 17 6 9.5118 -4.4060 -1.3521 18 6 9.2205 -5.6075 -0.4284 19 7 8.0306 -5.2689 0.3660 20 6 7.4426 -6.0670 1.2791 21 8 6.4590 -5.6814 1.8795 22 8 7.9447 -7.2917 1.5257 23 6 7.2605 -8.0962 2.5220 24 6 7.9705 -9.4440 2.6647 25 9 9.2946 -9.2335 3.0643 26 9 7.3110 -10.2194 3.6242 27 9 7.9550 -10.1116 1.4352 28 1 -0.4849 0.8401 -0.0004 29 1 3.8746 -0.6808 -0.8905 30 1 3.8752 -0.6797 0.8895 31 1 3.6585 -3.1502 0.8904 32 1 3.6579 -3.1505 -0.8897 33 1 7.4951 -4.1561 -2.1756 34 1 8.2653 -2.6252 -1.6394 35 1 9.8268 -4.7457 -2.3387 36 1 10.2639 -3.7529 -0.9097 37 1 9.0254 -6.4970 -1.0275 38 1 10.0710 -5.7836 0.2302 39 1 7.2728 -7.5763 3.4800 40 1 6.2288 -8.2600 2.2108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170819977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:32 Heat of formation + Delta-G solvation = -330.886383 kcal Electronic energy + Delta-G solvation = -29919.394783 eV Core-core repulsion = 24898.154101 eV Total energy + Delta-G solvation = -5021.240682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.29971 -48.84162 -48.76569 -42.31729 -41.20008 -39.38713 -37.73185 -37.42231 -35.41239 -33.24144 -32.81867 -31.31514 -30.83882 -27.32387 -25.73311 -24.55939 -23.55744 -22.56924 -22.43659 -21.35683 -19.89037 -19.83585 -19.54296 -19.25794 -18.91201 -18.58733 -17.83241 -17.76589 -17.55040 -16.92904 -16.38685 -16.03893 -15.70259 -15.65273 -15.30503 -15.21134 -15.13542 -14.97849 -14.92139 -14.91009 -14.77398 -14.46139 -14.19649 -14.12389 -13.50274 -13.42367 -13.14496 -13.05252 -12.83989 -12.49343 -12.46042 -12.29436 -12.22405 -11.93435 -11.80129 -11.76218 -11.57803 -11.44865 -11.35017 -10.81981 -10.06092 -8.35315 -6.44407 0.32065 1.14600 1.33907 1.38247 1.41122 1.51483 1.53914 1.70925 2.34658 2.38222 2.60091 2.78172 2.99440 3.19999 3.36877 3.41143 3.69139 3.79752 3.86750 3.98514 4.12698 4.14489 4.17901 4.36351 4.58183 4.62806 4.67560 4.77009 4.85903 4.97670 5.05070 5.16448 5.27124 5.30013 5.48524 5.53852 6.05088 6.14126 6.61456 6.67810 6.93816 7.20744 8.81143 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.002491 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.518012 B =11238.922192 C =12531.096469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.546 4.546 8 H 0.030 0.970 9 C 0.000 4.000 10 C 0.099 3.901 11 O -0.356 6.356 12 C 0.441 3.559 13 O -0.521 6.521 14 C 0.163 3.837 15 H 0.142 0.858 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.095 3.905 19 N -0.592 5.592 20 C 0.667 3.333 21 O -0.581 6.581 22 O -0.351 6.351 23 C 0.037 3.963 24 C 0.478 3.522 25 F -0.174 7.174 26 F -0.166 7.166 27 F -0.179 7.179 28 H 0.271 0.729 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.122 -13.721 -0.005 32.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.584 4.584 8 H 0.048 0.952 9 C -0.037 4.037 10 C 0.025 3.975 11 O -0.272 6.272 12 C 0.283 3.717 13 O -0.409 6.409 14 C 0.060 3.940 15 H 0.160 0.840 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.026 4.026 19 N -0.335 5.335 20 C 0.421 3.579 21 O -0.470 6.470 22 O -0.265 6.265 23 C -0.040 4.040 24 C 0.424 3.576 25 F -0.156 7.156 26 F -0.147 7.147 27 F -0.160 7.160 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.150 0.850 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 28.404 -13.957 0.281 31.649 hybrid contribution -1.103 -0.158 0.402 1.185 sum 27.301 -14.115 0.683 30.742 Atomic orbital electron populations 1.70055 1.08481 1.28724 1.51304 1.26019 0.95718 1.03811 0.93243 0.85541 0.79499 0.77179 0.79763 1.18313 1.20695 1.16538 1.21121 0.90861 0.93701 1.52694 0.95204 1.19445 0.94002 0.91576 0.98691 1.22868 0.74264 0.99921 1.00433 1.86416 1.24217 1.32974 1.83560 1.24397 0.93285 0.81479 0.72545 1.90669 1.67926 1.37446 1.44848 1.21878 0.85155 0.84105 1.02899 0.84047 1.22946 0.97682 1.05268 0.89580 1.22733 0.95738 0.95049 1.01362 1.22510 0.85456 1.00236 0.94363 1.47023 1.31695 1.15080 1.39653 1.17470 0.80553 0.79685 0.80195 1.91112 1.27342 1.75160 1.53339 1.86106 1.55915 1.26566 1.57879 1.24086 0.97443 0.87282 0.95196 1.19757 0.77418 0.86401 0.74044 1.93231 1.36855 1.94873 1.90615 1.93251 1.80808 1.76479 1.64168 1.93234 1.96281 1.82728 1.43769 0.92000 0.94049 0.94681 0.93791 0.92653 0.90815 0.85073 0.86549 0.86956 0.90605 0.88373 0.85026 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.96 43.26 27.47 68.60 1.88 45.15 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 7 C -0.55 -32.31 9.66 25.60 0.25 -32.06 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C 0.00 0.01 4.42 29.85 0.13 0.15 16 10 C 0.10 4.45 5.40 71.98 0.39 4.84 16 11 O -0.36 -13.37 10.22 -51.43 -0.53 -13.89 16 12 C 0.44 15.19 6.38 71.24 0.45 15.64 16 13 O -0.52 -22.15 13.52 29.56 0.40 -21.75 16 14 C 0.16 3.47 3.67 44.72 0.16 3.64 16 15 H 0.14 2.36 8.14 -2.39 -0.02 2.35 16 16 C -0.12 -1.41 6.49 31.99 0.21 -1.20 16 17 C -0.11 -0.57 6.95 31.78 0.22 -0.35 16 18 C 0.09 1.06 6.89 86.73 0.60 1.66 16 19 N -0.59 -12.86 3.14 -922.44 -2.90 -15.76 16 20 C 0.67 18.75 7.87 129.79 1.02 19.78 16 21 O -0.58 -21.51 13.52 27.44 0.37 -21.14 16 22 O -0.35 -7.89 9.72 -55.49 -0.54 -8.43 16 23 C 0.04 0.67 5.43 71.98 0.39 1.06 16 24 C 0.48 7.91 3.32 71.98 0.24 8.15 16 25 F -0.17 -2.97 17.26 44.97 0.78 -2.20 16 26 F -0.17 -2.70 17.32 44.97 0.78 -1.92 16 27 F -0.18 -3.36 17.26 44.97 0.78 -2.59 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.04 1.86 7.57 -2.39 -0.02 1.84 16 30 H 0.03 1.65 7.20 -2.39 -0.02 1.63 16 31 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 33 H 0.07 1.12 8.05 -2.39 -0.02 1.10 16 34 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -82.12 356.62 6.87 -75.25 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.02 Total: 4.17 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 4.53 Total: 22.35 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -2.60 Total: -75.00 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -0.29 Total: -65.21 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 2.33 Total: -6.70 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Total: -82.12 6.87 -75.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170819977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.640 kcal (2) G-P(sol) polarization free energy of solvation -82.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -337.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -330.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds