Wall clock time and date at job start Tue Mar 31 2020 22:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 119.99438 * 2 1 4 4 H 1.48502 * 109.47275 * 270.00201 * 3 2 1 5 5 H 1.48496 * 109.47275 * 30.00613 * 3 2 1 6 6 H 1.48500 * 109.46722 * 150.00494 * 3 2 1 7 7 C 1.37868 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47184 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46964 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00002 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99717 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00225 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99831 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46777 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99964 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99896 * 180.02562 * 17 16 15 20 20 C 1.39971 * 120.00205 * 185.27244 * 19 17 16 21 21 C 1.38868 * 120.05909 * 213.58289 * 20 19 17 22 22 C 1.38105 * 119.94035 * 180.22597 * 21 20 19 23 23 C 1.38383 * 120.05645 * 359.48119 * 22 21 20 24 24 Cl 1.73606 * 119.94041 * 180.29397 * 23 22 21 25 25 C 1.38381 * 120.11918 * 0.26737 * 23 22 21 26 26 C 1.38111 * 120.05418 * 359.97438 * 25 23 22 27 27 H 0.96992 * 119.99911 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46834 * 59.99358 * 9 7 2 29 29 H 1.09007 * 109.46806 * 299.99601 * 9 7 2 30 30 H 1.09000 * 109.46882 * 59.99885 * 10 9 7 31 31 H 1.08999 * 109.47262 * 300.00063 * 10 9 7 32 32 H 1.09002 * 109.46556 * 60.00010 * 11 10 9 33 33 H 1.08999 * 109.47435 * 300.00401 * 11 10 9 34 34 H 0.96997 * 120.00427 * 0.02562 * 12 11 10 35 35 H 0.96995 * 119.99626 * 0.02562 * 15 13 12 36 36 H 1.08993 * 109.47465 * 60.00103 * 16 15 13 37 37 H 1.09001 * 109.46836 * 299.99693 * 16 15 13 38 38 H 0.97005 * 120.00136 * 5.26924 * 19 17 16 39 39 H 1.07999 * 120.02596 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97035 * 179.74747 * 22 21 20 41 41 H 1.07999 * 119.97502 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.02252 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6364 -0.0022 12 7 6.0401 -4.0176 -0.0027 13 6 7.3651 -4.2638 -0.0033 14 8 8.1552 -3.3396 -0.0029 15 7 7.8144 -5.5345 -0.0032 16 6 9.2548 -5.8021 -0.0033 17 6 9.4891 -7.2908 -0.0038 18 8 8.5457 -8.0531 -0.0037 19 7 10.7468 -7.7750 -0.0034 20 6 10.9664 -9.1529 -0.1153 21 6 12.0416 -9.7412 0.5376 22 6 12.2586 -11.1001 0.4217 23 6 11.3996 -11.8771 -0.3355 24 17 11.6709 -13.5864 -0.4729 25 6 10.3244 -11.2943 -0.9829 26 6 10.1058 -9.9349 -0.8743 27 1 -0.4849 0.8400 0.0004 28 1 3.8753 -0.6802 0.8888 29 1 3.8746 -0.6800 -0.8912 30 1 3.6580 -3.1505 -0.8907 31 1 3.6587 -3.1501 0.8892 32 1 5.9157 -2.1222 0.8873 33 1 5.9144 -2.1228 -0.8926 34 1 5.4098 -4.7549 -0.0026 35 1 7.1841 -6.2717 -0.0032 36 1 9.7059 -5.3633 0.8866 37 1 9.7058 -5.3634 -0.8934 38 1 11.5000 -7.1687 0.0743 39 1 12.7098 -9.1358 1.1321 40 1 13.0970 -11.5575 0.9260 41 1 9.6552 -11.9029 -1.5729 42 1 9.2662 -9.4806 -1.3795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:16 Heat of formation + Delta-G solvation = -52.364923 kcal Electronic energy + Delta-G solvation = -24662.909888 eV Core-core repulsion = 20668.605459 eV Total energy + Delta-G solvation = -3994.304429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30725 -39.96801 -39.08502 -37.01405 -35.74423 -35.32584 -34.54395 -33.30646 -31.67773 -31.50214 -30.41468 -28.21017 -26.59856 -23.83477 -23.25093 -22.63948 -21.12002 -20.98189 -20.33736 -18.94479 -18.39856 -17.29462 -17.11838 -16.79120 -16.52893 -16.22112 -15.73483 -15.28323 -15.07404 -14.60691 -14.38386 -14.37407 -14.08538 -13.98590 -13.85176 -13.58016 -13.13435 -12.90315 -12.69413 -12.44411 -12.06852 -12.00420 -11.90628 -11.37903 -11.07579 -10.89525 -10.85320 -10.54459 -10.39097 -10.03326 -9.84447 -9.69585 -9.63323 -9.46375 -9.22632 -8.77247 -8.68307 -8.55234 -6.06011 -4.04815 0.45197 0.70780 1.63706 1.85394 2.07688 2.80433 3.07426 3.18940 3.31446 3.39032 3.43203 3.88938 4.20555 4.27566 4.29080 4.44626 4.64081 4.76302 4.83228 4.86984 4.90097 5.28110 5.29009 5.37674 5.52467 5.59856 5.67791 5.68005 5.74856 6.01259 6.10438 6.23840 6.34444 6.46007 6.61913 6.65455 6.80202 6.91552 7.23315 7.33994 7.36618 7.75809 7.99154 8.50247 8.57053 8.97950 9.56184 11.07254 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034528 B = 0.001367 C = 0.001322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.746444 B =20482.377438 C =21177.658754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.133 3.867 12 N -0.738 5.738 13 C 0.706 3.294 14 O -0.595 6.595 15 N -0.742 5.742 16 C 0.125 3.875 17 C 0.512 3.488 18 O -0.511 6.511 19 N -0.671 5.671 20 C 0.153 3.847 21 C -0.133 4.133 22 C -0.090 4.090 23 C -0.051 4.051 24 Cl -0.071 7.071 25 C -0.089 4.089 26 C -0.109 4.109 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.408 0.592 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.417 0.583 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.488 -24.596 -0.437 38.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C 0.010 3.990 12 N -0.392 5.392 13 C 0.405 3.595 14 O -0.473 6.473 15 N -0.403 5.403 16 C -0.004 4.004 17 C 0.299 3.701 18 O -0.385 6.385 19 N -0.317 5.317 20 C 0.059 3.941 21 C -0.153 4.153 22 C -0.109 4.109 23 C -0.078 4.078 24 Cl -0.042 7.042 25 C -0.108 4.108 26 C -0.129 4.129 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.245 0.755 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.254 0.746 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 29.343 -24.215 -0.457 38.047 hybrid contribution 0.178 0.331 0.053 0.380 sum 29.520 -23.884 -0.403 37.975 Atomic orbital electron populations 1.69916 1.06323 1.26946 1.51027 1.25025 0.94740 0.99227 0.94461 0.86773 0.80405 0.83526 0.78578 1.20253 1.21381 1.18878 1.21102 0.89328 0.94527 1.51077 0.91007 1.19503 0.97249 0.91430 0.96694 1.21719 0.90615 1.01047 1.01817 1.21551 0.95782 0.79789 1.01913 1.45304 1.04595 1.10330 1.78927 1.15847 0.83272 0.82419 0.77944 1.90924 1.55078 1.43114 1.58198 1.44727 1.06385 1.07470 1.81710 1.20771 0.83948 0.90334 1.05322 1.20891 0.82517 0.91476 0.75169 1.90748 1.41444 1.59256 1.47056 1.43431 1.09092 1.06078 1.73075 1.17785 0.96550 0.83317 0.96483 1.20866 0.99217 0.94603 1.00622 1.20855 0.99093 0.92816 0.98180 1.20942 0.98585 0.85375 1.02889 1.98381 1.96124 1.12569 1.97117 1.20988 0.96231 0.94651 0.98927 1.21148 1.00347 0.93073 0.98319 0.92708 0.96267 0.96697 0.92082 0.92048 0.91839 0.91849 0.76870 0.75536 0.88038 0.87902 0.74573 0.84497 0.84411 0.84413 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 11 C 0.13 2.17 5.67 -4.04 -0.02 2.14 16 12 N -0.74 -10.01 5.56 -65.23 -0.36 -10.37 16 13 C 0.71 9.83 8.57 -86.92 -0.74 9.09 16 14 O -0.59 -10.38 16.34 5.29 0.09 -10.29 16 15 N -0.74 -7.55 5.53 -66.42 -0.37 -7.91 16 16 C 0.12 0.91 6.16 -5.19 -0.03 0.88 16 17 C 0.51 3.67 7.64 -10.98 -0.08 3.59 16 18 O -0.51 -5.27 13.36 5.55 0.07 -5.20 16 19 N -0.67 -3.20 5.34 -9.85 -0.05 -3.25 16 20 C 0.15 0.97 6.28 -83.68 -0.53 0.44 16 21 C -0.13 -0.65 9.96 -39.40 -0.39 -1.04 16 22 C -0.09 -0.49 9.82 -39.58 -0.39 -0.88 16 23 C -0.05 -0.34 6.32 -39.48 -0.25 -0.59 16 24 Cl -0.07 -0.47 28.95 -51.86 -1.50 -1.97 16 25 C -0.09 -0.61 9.82 -39.58 -0.39 -1.00 16 26 C -0.11 -0.82 8.65 -39.40 -0.34 -1.16 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 29 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.40 4.43 8.49 -40.82 -0.35 4.08 16 35 H 0.41 3.81 7.45 -40.82 -0.30 3.50 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.42 0.61 8.82 -40.82 -0.36 0.25 16 39 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 40 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.14 1.21 6.42 -52.49 -0.34 0.87 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -35.53 375.86 -9.71 -45.24 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.51 Total: 2.38 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.85 Total: -4.30 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.01 Total: -48.49 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.16 Total: -15.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.53 -9.71 -45.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.125 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds