Wall clock time and date at job start Tue Mar 31 2020 22:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 119.99438 * 2 1 4 4 H 1.48502 * 109.47275 * 270.00201 * 3 2 1 5 5 H 1.48496 * 109.47275 * 30.00613 * 3 2 1 6 6 H 1.48500 * 109.46722 * 150.00494 * 3 2 1 7 7 C 1.37868 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47184 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46964 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00002 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99717 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00225 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99831 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46777 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99964 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99896 * 180.02562 * 17 16 15 20 20 C 1.39971 * 120.00205 * 185.27244 * 19 17 16 21 21 C 1.38868 * 120.05909 * 213.58289 * 20 19 17 22 22 C 1.38105 * 119.94035 * 180.22597 * 21 20 19 23 23 C 1.38383 * 120.05645 * 359.48119 * 22 21 20 24 24 Cl 1.73606 * 119.94041 * 180.29397 * 23 22 21 25 25 C 1.38381 * 120.11918 * 0.26737 * 23 22 21 26 26 C 1.38111 * 120.05418 * 359.97438 * 25 23 22 27 27 H 0.96992 * 119.99911 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46834 * 59.99358 * 9 7 2 29 29 H 1.09007 * 109.46806 * 299.99601 * 9 7 2 30 30 H 1.09000 * 109.46882 * 59.99885 * 10 9 7 31 31 H 1.08999 * 109.47262 * 300.00063 * 10 9 7 32 32 H 1.09002 * 109.46556 * 60.00010 * 11 10 9 33 33 H 1.08999 * 109.47435 * 300.00401 * 11 10 9 34 34 H 0.96997 * 120.00427 * 0.02562 * 12 11 10 35 35 H 0.96995 * 119.99626 * 0.02562 * 15 13 12 36 36 H 1.08993 * 109.47465 * 60.00103 * 16 15 13 37 37 H 1.09001 * 109.46836 * 299.99693 * 16 15 13 38 38 H 0.97005 * 120.00136 * 5.26924 * 19 17 16 39 39 H 1.07999 * 120.02596 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97035 * 179.74747 * 22 21 20 41 41 H 1.07999 * 119.97502 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.02252 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6364 -0.0022 12 7 6.0401 -4.0176 -0.0027 13 6 7.3651 -4.2638 -0.0033 14 8 8.1552 -3.3396 -0.0029 15 7 7.8144 -5.5345 -0.0032 16 6 9.2548 -5.8021 -0.0033 17 6 9.4891 -7.2908 -0.0038 18 8 8.5457 -8.0531 -0.0037 19 7 10.7468 -7.7750 -0.0034 20 6 10.9664 -9.1529 -0.1153 21 6 12.0416 -9.7412 0.5376 22 6 12.2586 -11.1001 0.4217 23 6 11.3996 -11.8771 -0.3355 24 17 11.6709 -13.5864 -0.4729 25 6 10.3244 -11.2943 -0.9829 26 6 10.1058 -9.9349 -0.8743 27 1 -0.4849 0.8400 0.0004 28 1 3.8753 -0.6802 0.8888 29 1 3.8746 -0.6800 -0.8912 30 1 3.6580 -3.1505 -0.8907 31 1 3.6587 -3.1501 0.8892 32 1 5.9157 -2.1222 0.8873 33 1 5.9144 -2.1228 -0.8926 34 1 5.4098 -4.7549 -0.0026 35 1 7.1841 -6.2717 -0.0032 36 1 9.7059 -5.3633 0.8866 37 1 9.7058 -5.3634 -0.8934 38 1 11.5000 -7.1687 0.0743 39 1 12.7098 -9.1358 1.1321 40 1 13.0970 -11.5575 0.9260 41 1 9.6552 -11.9029 -1.5729 42 1 9.2662 -9.4806 -1.3795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170885446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:15 Heat of formation + Delta-G solvation = -78.034327 kcal Electronic energy + Delta-G solvation = -24664.022997 eV Core-core repulsion = 20668.605459 eV Total energy + Delta-G solvation = -3995.417538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88186 -40.92871 -39.67581 -37.52524 -37.08377 -35.86954 -35.48329 -35.12286 -33.24773 -32.11987 -31.04535 -29.34392 -27.87638 -24.68231 -24.20049 -23.48577 -22.23491 -21.78176 -21.64892 -19.78005 -19.10003 -18.84919 -17.81921 -17.73265 -17.23534 -17.21195 -16.63721 -16.31809 -16.04145 -15.79672 -15.51507 -15.20629 -15.10068 -14.74610 -14.56198 -14.52772 -14.33971 -13.97144 -13.75974 -13.47737 -13.36310 -12.94389 -12.70936 -12.66621 -12.53682 -11.92285 -11.86204 -11.76708 -11.57124 -11.40146 -11.36176 -11.30291 -11.08582 -10.74370 -10.45432 -10.08450 -9.83189 -9.16308 -8.27707 -6.31844 -0.03270 0.25968 1.15021 1.31500 1.38988 1.39203 1.40766 1.52595 2.05154 2.10624 2.38368 2.61887 3.08285 3.27753 3.41550 3.79750 3.87783 4.12015 4.21245 4.24730 4.29713 4.33299 4.34789 4.43956 4.54294 4.85268 4.92391 4.93529 4.95447 5.05953 5.14608 5.22887 5.27467 5.29116 5.43311 5.53589 5.58908 5.66832 5.77543 5.92938 6.21187 6.29304 6.76427 6.87530 7.01430 7.33167 7.51177 8.88819 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034528 B = 0.001367 C = 0.001322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.746444 B =20482.377438 C =21177.658754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.012 4.012 10 C -0.101 4.101 11 C 0.147 3.853 12 N -0.733 5.733 13 C 0.706 3.294 14 O -0.630 6.630 15 N -0.732 5.732 16 C 0.123 3.877 17 C 0.518 3.482 18 O -0.546 6.546 19 N -0.653 5.653 20 C 0.143 3.857 21 C -0.123 4.123 22 C -0.091 4.091 23 C -0.061 4.061 24 Cl -0.075 7.075 25 C -0.099 4.099 26 C -0.125 4.125 27 H 0.266 0.734 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.410 0.590 35 H 0.413 0.587 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.435 0.565 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.140 0.860 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.502 -24.337 0.073 40.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.050 4.050 10 C -0.139 4.139 11 C 0.023 3.977 12 N -0.388 5.388 13 C 0.405 3.595 14 O -0.511 6.511 15 N -0.391 5.391 16 C -0.004 4.004 17 C 0.306 3.694 18 O -0.423 6.423 19 N -0.301 5.301 20 C 0.048 3.952 21 C -0.143 4.143 22 C -0.110 4.110 23 C -0.088 4.088 24 Cl -0.046 7.046 25 C -0.119 4.119 26 C -0.146 4.146 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.251 0.749 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.275 0.725 39 H 0.186 0.814 40 H 0.175 0.825 41 H 0.158 0.842 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 32.408 -24.010 0.052 40.333 hybrid contribution -0.767 0.117 -0.108 0.783 sum 31.641 -23.894 -0.055 39.650 Atomic orbital electron populations 1.70069 1.08303 1.28120 1.52771 1.25999 0.95578 1.03506 0.94164 0.85677 0.79570 0.78341 0.79202 1.19226 1.21125 1.16888 1.21487 0.92041 0.93217 1.50259 0.94617 1.19464 0.93920 0.94611 0.96966 1.21490 0.92238 0.98145 1.02076 1.21172 0.93830 0.81210 1.01496 1.45072 1.05076 1.09717 1.78974 1.15897 0.82833 0.83044 0.77710 1.90901 1.55851 1.44434 1.59909 1.44647 1.07899 1.06235 1.80345 1.20965 0.82278 0.90515 1.06673 1.20824 0.82796 0.91102 0.74661 1.90747 1.42688 1.59900 1.48932 1.43245 1.08955 1.05946 1.71910 1.17930 0.96873 0.83740 0.96658 1.21173 0.98716 0.94612 0.99842 1.21163 0.99208 0.93077 0.97593 1.21090 0.98954 0.85377 1.03428 1.98377 1.96114 1.12921 1.97171 1.21060 0.96723 0.94675 0.99400 1.21129 1.00618 0.93534 0.99295 0.92554 0.95901 0.96012 0.91862 0.91874 0.92335 0.92274 0.75443 0.74949 0.86580 0.86605 0.72479 0.81417 0.82453 0.84184 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 2 C 0.00 0.25 5.47 84.65 0.46 0.71 16 3 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 7 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 8 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.10 -3.64 5.27 30.59 0.16 -3.47 16 11 C 0.15 4.57 5.67 86.38 0.49 5.06 16 12 N -0.73 -18.74 5.56 -478.53 -2.66 -21.40 16 13 C 0.71 18.50 8.57 179.05 1.53 20.03 16 14 O -0.63 -20.95 16.34 -4.00 -0.07 -21.02 16 15 N -0.73 -13.66 5.53 -482.30 -2.67 -16.33 16 16 C 0.12 1.54 6.16 85.63 0.53 2.07 16 17 C 0.52 6.62 7.64 87.66 0.67 7.29 16 18 O -0.55 -10.92 13.36 -3.05 -0.04 -10.96 16 19 N -0.65 -4.84 5.34 -303.47 -1.62 -6.46 16 20 C 0.14 1.57 6.28 38.14 0.24 1.80 16 21 C -0.12 -0.88 9.96 22.39 0.22 -0.65 16 22 C -0.09 -0.80 9.82 22.27 0.22 -0.58 16 23 C -0.06 -0.76 6.32 22.34 0.14 -0.62 16 24 Cl -0.07 -0.94 28.95 -2.72 -0.08 -1.02 16 25 C -0.10 -1.37 9.82 22.27 0.22 -1.15 16 26 C -0.13 -1.86 8.65 22.39 0.19 -1.66 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 29 H 0.02 0.95 7.57 -2.38 -0.02 0.94 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.41 8.48 8.49 -92.71 -0.79 7.69 16 35 H 0.41 7.15 7.45 -92.71 -0.69 6.46 16 36 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 37 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.43 -0.02 8.82 -92.70 -0.82 -0.84 16 39 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 41 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 42 H 0.13 2.27 6.42 -2.91 -0.02 2.25 16 Total: -1.00 -77.41 375.86 -0.77 -78.18 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -1.27 Total: 13.89 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.45 Total: -1.56 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -6.65 Total: -103.50 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.11 Total: -31.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -77.41 -0.77 -78.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.148 kcal (2) G-P(sol) polarization free energy of solvation -77.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds