Wall clock time and date at job start Tue Mar 31 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48497 * 109.47228 * 270.00001 * 3 2 1 5 5 H 1.48501 * 109.47223 * 30.00129 * 3 2 1 6 6 H 1.48508 * 109.47243 * 149.99706 * 3 2 1 7 7 C 1.38798 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00155 * 359.97438 * 7 2 1 9 9 S 1.76200 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00132 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47264 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99929 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99638 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99542 * 184.99747 * 13 11 10 15 15 C 1.50694 * 109.54170 * 58.21670 * 14 13 11 16 16 C 1.38265 * 119.99204 * 24.00271 * 15 14 13 17 17 C 1.38229 * 120.05256 * 180.02562 * 16 15 14 18 18 C 1.38216 * 120.02592 * 359.97438 * 17 16 15 19 19 C 1.38440 * 119.97600 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.03167 * 180.02562 * 19 18 17 21 21 C 1.38181 * 119.98294 * 203.72888 * 15 14 13 22 22 C 1.53180 * 109.60624 * 297.99432 * 14 13 11 23 23 C 1.53086 * 109.16452 * 297.05621 * 22 14 13 24 24 O 1.42910 * 109.42475 * 302.40918 * 23 22 14 25 25 C 1.42901 * 114.09701 * 61.15311 * 24 23 22 26 26 C 1.53100 * 109.41441 * 298.84323 * 25 24 23 27 27 H 0.96996 * 120.00537 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47437 * 59.99607 * 10 9 7 29 29 H 1.08997 * 109.47111 * 300.00209 * 10 9 7 30 30 H 0.97003 * 120.00285 * 4.99153 * 13 11 10 31 31 H 1.07998 * 119.97116 * 0.02562 * 16 15 14 32 32 H 1.07993 * 119.98879 * 179.97438 * 17 16 15 33 33 H 1.08002 * 120.01898 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.01055 * 0.02562 * 21 15 14 35 35 H 1.08994 * 109.51087 * 177.15236 * 22 14 13 36 36 H 1.08996 * 109.52793 * 56.96623 * 22 14 13 37 37 H 1.09002 * 109.48168 * 182.42163 * 23 22 14 38 38 H 1.09004 * 109.48206 * 62.39296 * 23 22 14 39 39 H 1.08994 * 109.48214 * 58.82281 * 25 24 23 40 40 H 1.08995 * 109.47811 * 178.85372 * 25 24 23 41 41 H 1.08993 * 109.52111 * 177.51762 * 26 25 24 42 42 H 1.09004 * 109.51718 * 297.64010 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2323 -0.0002 12 8 6.3440 -2.2961 0.0003 13 7 6.0458 -4.4945 -0.0010 14 6 7.4863 -4.7373 0.1094 15 6 8.0052 -4.1211 1.3830 16 6 7.1471 -3.9035 2.4451 17 6 7.6216 -3.3379 3.6137 18 6 8.9548 -2.9896 3.7219 19 6 9.8149 -3.2070 2.6592 20 9 11.1183 -2.8674 2.7639 21 6 9.3396 -3.7789 1.4909 22 6 8.2059 -4.1151 -1.0912 23 6 7.7298 -4.8022 -2.3737 24 8 7.9783 -6.2065 -2.2810 25 6 7.2932 -6.8504 -1.2048 26 6 7.7520 -6.2457 0.1248 27 1 -0.4851 0.8400 -0.0004 28 1 3.6440 -3.4313 -0.8904 29 1 3.6434 -3.4317 0.8895 30 1 5.4321 -5.2422 -0.0745 31 1 6.1053 -4.1757 2.3616 32 1 6.9504 -3.1680 4.4425 33 1 9.3253 -2.5473 4.6349 34 1 10.0105 -3.9527 0.6626 35 1 9.2817 -4.2525 -0.9821 36 1 7.9770 -3.0507 -1.1417 37 1 8.2702 -4.3930 -3.2274 38 1 6.6613 -4.6300 -2.5033 39 1 6.2191 -6.7048 -1.3189 40 1 7.5189 -7.9166 -1.2165 41 1 7.1986 -6.7048 0.9439 42 1 8.8184 -6.4274 0.2588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173830940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:54 Heat of formation + Delta-G solvation = -97.477273 kcal Electronic energy + Delta-G solvation = -27655.392421 eV Core-core repulsion = 23641.255519 eV Total energy + Delta-G solvation = -4014.136903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.97068 -41.22296 -38.61906 -38.50227 -35.38321 -32.56839 -32.47623 -31.48085 -30.54373 -30.31612 -28.96898 -25.68624 -25.25332 -24.06735 -22.84692 -21.96628 -21.20600 -19.49759 -18.01752 -17.80650 -16.88342 -16.53814 -16.30388 -16.18977 -15.98691 -15.66627 -15.58478 -15.28565 -15.01824 -14.68090 -14.11845 -14.03772 -13.96844 -13.52796 -13.36163 -13.06239 -12.84719 -12.79008 -12.61918 -12.36656 -12.04457 -11.82484 -11.63773 -11.36228 -11.31447 -11.15279 -11.05238 -10.66572 -10.57206 -9.90113 -9.86564 -9.53508 -9.17548 -9.04675 -9.00326 -8.70221 -8.55424 -6.97050 -6.33411 -4.05570 1.06320 1.12128 2.65735 2.84662 3.19164 3.29511 3.45939 3.46473 3.56791 3.64014 4.05200 4.28573 4.35284 4.36283 4.49644 4.64336 4.69112 4.75522 4.85593 4.90084 5.03185 5.05883 5.09396 5.17262 5.28428 5.31991 5.38491 5.42982 5.55095 5.64466 5.69139 5.70131 5.81168 5.91668 5.94536 5.99603 6.03428 6.17358 6.27886 6.53998 6.79285 6.94897 7.47735 7.89515 8.36806 8.38687 9.12796 10.75867 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.003801 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.899359 B = 7365.159121 C = 8868.406303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.855 3.145 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.137 6.137 10 C -0.126 4.126 11 C 0.532 3.468 12 O -0.501 6.501 13 N -0.733 5.733 14 C 0.223 3.777 15 C -0.045 4.045 16 C -0.109 4.109 17 C -0.085 4.085 18 C -0.156 4.156 19 C 0.097 3.903 20 F -0.143 7.143 21 C -0.145 4.145 22 C -0.167 4.167 23 C 0.063 3.937 24 O -0.382 6.382 25 C 0.061 3.939 26 C -0.153 4.153 27 H 0.271 0.729 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.400 0.600 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.348 -14.856 2.671 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.106 0.894 9 S 0.089 5.911 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.374 6.374 13 N -0.388 5.388 14 C 0.136 3.864 15 C -0.046 4.046 16 C -0.127 4.127 17 C -0.103 4.103 18 C -0.175 4.175 19 C 0.078 3.922 20 F -0.121 7.121 21 C -0.164 4.164 22 C -0.206 4.206 23 C -0.013 4.013 24 O -0.301 6.301 25 C -0.016 4.016 26 C -0.191 4.191 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.235 0.765 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.620 -13.259 2.558 23.001 hybrid contribution -1.146 -0.307 0.270 1.217 sum 17.474 -13.567 2.829 22.302 Atomic orbital electron populations 1.69927 1.05932 1.27814 1.47943 1.24694 0.94419 0.98918 0.93135 0.86757 0.81892 0.83368 0.79961 1.19197 1.19909 1.15952 1.22311 0.88305 0.97506 1.58942 0.89425 1.84815 1.09235 0.99649 1.97417 1.23304 0.93919 1.04692 1.05727 1.20273 0.90560 0.82250 0.75139 1.90691 1.58353 1.42037 1.46349 1.46181 1.06632 1.08413 1.77615 1.18982 0.81067 0.94257 0.92074 1.19665 0.92645 0.97479 0.94842 1.21016 0.99922 0.99139 0.92630 1.20994 0.94475 0.96773 0.98070 1.21122 0.94117 1.03579 0.98672 1.17606 0.78372 1.00666 0.95600 1.91485 1.33739 1.90325 1.96594 1.20891 0.96270 1.02066 0.97210 1.22734 1.00411 1.03496 0.93935 1.22582 1.00740 0.80514 0.97476 1.87937 1.70618 1.21364 1.50148 1.22570 0.96135 0.97299 0.85595 1.22499 1.04082 0.93122 0.99432 0.91899 0.88635 0.88548 0.76461 0.85589 0.84941 0.84954 0.84782 0.90256 0.87747 0.88608 0.92678 0.92936 0.88437 0.89763 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 13.97 55.49 0.78 -25.35 16 2 C 0.10 2.79 5.50 -17.44 -0.10 2.69 16 3 Si 0.86 21.42 27.74 -169.99 -4.71 16.70 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.50 16 7 C -0.52 -14.65 10.04 30.94 0.31 -14.34 16 8 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 9 S -0.14 -3.32 18.55 -107.50 -1.99 -5.32 16 10 C -0.13 -2.24 6.16 36.01 0.22 -2.02 16 11 C 0.53 8.31 6.08 -10.98 -0.07 8.24 16 12 O -0.50 -9.59 12.89 5.56 0.07 -9.52 16 13 N -0.73 -8.06 3.40 -48.51 -0.17 -8.23 16 14 C 0.22 2.31 0.51 -132.79 -0.07 2.24 16 15 C -0.05 -0.54 3.76 -104.64 -0.39 -0.93 16 16 C -0.11 -1.34 8.40 -39.58 -0.33 -1.67 16 17 C -0.09 -0.98 10.04 -39.59 -0.40 -1.38 16 18 C -0.16 -1.80 10.03 -39.51 -0.40 -2.20 16 19 C 0.10 1.20 7.30 -39.41 -0.29 0.92 16 20 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 21 C -0.15 -1.73 9.13 -39.51 -0.36 -2.09 16 22 C -0.17 -1.88 4.33 -26.59 -0.12 -1.99 16 23 C 0.06 0.67 6.68 37.20 0.25 0.91 16 24 O -0.38 -3.95 10.77 -35.23 -0.38 -4.33 16 25 C 0.06 0.46 6.67 37.21 0.25 0.71 16 26 C -0.15 -1.17 4.95 -26.59 -0.13 -1.30 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.10 1.59 8.14 -51.91 -0.42 1.17 16 29 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.40 3.34 7.48 -40.82 -0.31 3.04 16 31 H 0.13 1.50 6.83 -52.49 -0.36 1.14 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.40 6.30 -52.49 -0.33 1.07 16 35 H 0.08 0.80 6.37 -51.93 -0.33 0.47 16 36 H 0.10 1.49 6.10 -51.93 -0.32 1.17 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 39 H 0.05 0.37 7.06 -51.93 -0.37 0.00 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -33.17 354.31 -8.01 -41.19 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.37 Total: 3.49 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.62 Total: -12.19 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.61 Total: -33.58 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.31 Total: -13.85 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.17 -8.01 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173830940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.291 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds