Wall clock time and date at job start Tue Mar 31 2020 22:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48497 * 109.47228 * 270.00001 * 3 2 1 5 5 H 1.48501 * 109.47223 * 30.00129 * 3 2 1 6 6 H 1.48508 * 109.47243 * 149.99706 * 3 2 1 7 7 C 1.38798 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00155 * 359.97438 * 7 2 1 9 9 S 1.76200 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00132 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47264 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99929 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99638 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99542 * 184.99747 * 13 11 10 15 15 C 1.50694 * 109.54170 * 58.21670 * 14 13 11 16 16 C 1.38265 * 119.99204 * 24.00271 * 15 14 13 17 17 C 1.38229 * 120.05256 * 180.02562 * 16 15 14 18 18 C 1.38216 * 120.02592 * 359.97438 * 17 16 15 19 19 C 1.38440 * 119.97600 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.03167 * 180.02562 * 19 18 17 21 21 C 1.38181 * 119.98294 * 203.72888 * 15 14 13 22 22 C 1.53180 * 109.60624 * 297.99432 * 14 13 11 23 23 C 1.53086 * 109.16452 * 297.05621 * 22 14 13 24 24 O 1.42910 * 109.42475 * 302.40918 * 23 22 14 25 25 C 1.42901 * 114.09701 * 61.15311 * 24 23 22 26 26 C 1.53100 * 109.41441 * 298.84323 * 25 24 23 27 27 H 0.96996 * 120.00537 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47437 * 59.99607 * 10 9 7 29 29 H 1.08997 * 109.47111 * 300.00209 * 10 9 7 30 30 H 0.97003 * 120.00285 * 4.99153 * 13 11 10 31 31 H 1.07998 * 119.97116 * 0.02562 * 16 15 14 32 32 H 1.07993 * 119.98879 * 179.97438 * 17 16 15 33 33 H 1.08002 * 120.01898 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.01055 * 0.02562 * 21 15 14 35 35 H 1.08994 * 109.51087 * 177.15236 * 22 14 13 36 36 H 1.08996 * 109.52793 * 56.96623 * 22 14 13 37 37 H 1.09002 * 109.48168 * 182.42163 * 23 22 14 38 38 H 1.09004 * 109.48206 * 62.39296 * 23 22 14 39 39 H 1.08994 * 109.48214 * 58.82281 * 25 24 23 40 40 H 1.08995 * 109.47811 * 178.85372 * 25 24 23 41 41 H 1.08993 * 109.52111 * 177.51762 * 26 25 24 42 42 H 1.09004 * 109.51718 * 297.64010 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2323 -0.0002 12 8 6.3440 -2.2961 0.0003 13 7 6.0458 -4.4945 -0.0010 14 6 7.4863 -4.7373 0.1094 15 6 8.0052 -4.1211 1.3830 16 6 7.1471 -3.9035 2.4451 17 6 7.6216 -3.3379 3.6137 18 6 8.9548 -2.9896 3.7219 19 6 9.8149 -3.2070 2.6592 20 9 11.1183 -2.8674 2.7639 21 6 9.3396 -3.7789 1.4909 22 6 8.2059 -4.1151 -1.0912 23 6 7.7298 -4.8022 -2.3737 24 8 7.9783 -6.2065 -2.2810 25 6 7.2932 -6.8504 -1.2048 26 6 7.7520 -6.2457 0.1248 27 1 -0.4851 0.8400 -0.0004 28 1 3.6440 -3.4313 -0.8904 29 1 3.6434 -3.4317 0.8895 30 1 5.4321 -5.2422 -0.0745 31 1 6.1053 -4.1757 2.3616 32 1 6.9504 -3.1680 4.4425 33 1 9.3253 -2.5473 4.6349 34 1 10.0105 -3.9527 0.6626 35 1 9.2817 -4.2525 -0.9821 36 1 7.9770 -3.0507 -1.1417 37 1 8.2702 -4.3930 -3.2274 38 1 6.6613 -4.6300 -2.5033 39 1 6.2191 -6.7048 -1.3189 40 1 7.5189 -7.9166 -1.2165 41 1 7.1986 -6.7048 0.9439 42 1 8.8184 -6.4274 0.2588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173830940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:53 Heat of formation + Delta-G solvation = -118.333856 kcal Electronic energy + Delta-G solvation = -27656.296831 eV Core-core repulsion = 23641.255519 eV Total energy + Delta-G solvation = -4015.041312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.92942 -42.16731 -39.64159 -39.43831 -36.34099 -34.67002 -33.62861 -32.21665 -31.50014 -31.18293 -30.25466 -27.84903 -26.10893 -24.84251 -23.69525 -22.88869 -22.27952 -20.46413 -19.91747 -18.72452 -18.05283 -17.59277 -17.22901 -17.11489 -17.01274 -16.86181 -16.61184 -16.56383 -16.34974 -15.79054 -15.54257 -15.04296 -14.94741 -14.88991 -14.63693 -14.29753 -13.97476 -13.64943 -13.58695 -13.40929 -13.33438 -13.07816 -12.98512 -12.74735 -12.59556 -12.43308 -12.14429 -11.93878 -11.86836 -11.38980 -11.17206 -10.80701 -10.65625 -10.50992 -10.17528 -9.91542 -9.62733 -8.97190 -8.51432 -6.20907 0.15423 0.21659 0.99435 1.30542 1.46000 1.54638 1.59171 2.16332 2.24452 2.56665 2.72546 2.87422 2.93521 3.17085 3.49272 3.59657 3.68052 3.83149 3.95866 3.97929 4.03238 4.14246 4.23918 4.25382 4.33351 4.43169 4.48958 4.51344 4.65824 4.77534 4.80471 4.84866 5.01104 5.03482 5.06430 5.10398 5.12465 5.24063 5.37175 5.59489 5.70996 5.89953 6.12161 6.23345 6.46498 6.94459 7.21493 8.61082 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.003801 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.899359 B = 7365.159121 C = 8868.406303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.062 0.938 9 S -0.170 6.170 10 C -0.113 4.113 11 C 0.541 3.459 12 O -0.538 6.538 13 N -0.709 5.709 14 C 0.223 3.777 15 C -0.051 4.051 16 C -0.123 4.123 17 C -0.092 4.092 18 C -0.160 4.160 19 C 0.080 3.920 20 F -0.148 7.148 21 C -0.152 4.152 22 C -0.164 4.164 23 C 0.068 3.932 24 O -0.393 6.393 25 C 0.055 3.945 26 C -0.144 4.144 27 H 0.276 0.724 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.417 0.583 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.481 -16.294 2.957 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.080 0.920 9 S 0.057 5.943 10 C -0.264 4.264 11 C 0.326 3.674 12 O -0.413 6.413 13 N -0.364 5.364 14 C 0.137 3.863 15 C -0.052 4.052 16 C -0.141 4.141 17 C -0.110 4.110 18 C -0.179 4.179 19 C 0.061 3.939 20 F -0.127 7.127 21 C -0.171 4.171 22 C -0.203 4.203 23 C -0.009 4.009 24 O -0.312 6.312 25 C -0.022 4.022 26 C -0.182 4.182 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.255 0.745 31 H 0.146 0.854 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 19.749 -14.751 2.846 24.814 hybrid contribution -1.460 -0.025 0.188 1.472 sum 18.289 -14.777 3.034 23.708 Atomic orbital electron populations 1.70007 1.07323 1.28953 1.49303 1.25507 0.95170 1.02078 0.92978 0.85913 0.80726 0.79886 0.80122 1.18855 1.18548 1.16049 1.22484 0.90521 0.96569 1.58009 0.91972 1.84728 1.06046 1.05974 1.97555 1.23296 0.96137 0.99716 1.07293 1.19825 0.89132 0.83291 0.75106 1.90698 1.58712 1.43522 1.48418 1.45904 1.07600 1.07255 1.75682 1.19125 0.79832 0.96194 0.91152 1.19808 0.92646 0.97517 0.95240 1.21189 1.00148 0.99637 0.93155 1.21260 0.94806 0.96377 0.98512 1.21365 0.94098 1.03286 0.99156 1.17840 0.78394 1.01345 0.96284 1.91468 1.34079 1.90458 1.96658 1.21045 0.96619 1.01979 0.97424 1.22658 1.01166 1.01687 0.94775 1.22496 1.00199 0.80964 0.97228 1.87933 1.71144 1.20883 1.51278 1.22821 0.96478 0.98266 0.84616 1.22491 1.04839 0.90595 1.00303 0.91431 0.87198 0.86894 0.74511 0.85371 0.83226 0.83253 0.83828 0.89336 0.90825 0.88202 0.93504 0.92093 0.86176 0.87754 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.09 13.97 21.65 0.30 -54.79 16 2 C 0.05 2.77 5.50 84.86 0.47 3.23 16 3 Si 0.91 44.29 27.74 68.60 1.90 46.19 16 4 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.24 -11.45 6.74 99.48 0.67 -10.78 16 7 C -0.53 -29.84 10.04 67.95 0.68 -29.15 16 8 H 0.06 3.71 8.03 -2.91 -0.02 3.68 16 9 S -0.17 -8.14 18.55 -56.49 -1.05 -9.19 16 10 C -0.11 -3.89 6.16 71.24 0.44 -3.45 16 11 C 0.54 16.15 6.08 87.66 0.53 16.68 16 12 O -0.54 -20.25 12.89 -3.01 -0.04 -20.29 16 13 N -0.71 -14.04 3.40 -425.78 -1.45 -15.49 16 14 C 0.22 4.17 0.51 2.97 0.00 4.17 16 15 C -0.05 -1.13 3.76 -19.87 -0.07 -1.21 16 16 C -0.12 -2.83 8.40 22.27 0.19 -2.64 16 17 C -0.09 -1.99 10.04 22.26 0.22 -1.76 16 18 C -0.16 -3.50 10.03 22.31 0.22 -3.28 16 19 C 0.08 1.93 7.30 22.38 0.16 2.09 16 20 F -0.15 -3.67 17.27 44.97 0.78 -2.90 16 21 C -0.15 -3.44 9.13 22.32 0.20 -3.24 16 22 C -0.16 -3.49 4.33 30.68 0.13 -3.35 16 23 C 0.07 1.32 6.68 72.01 0.48 1.80 16 24 O -0.39 -7.17 10.77 -148.98 -1.60 -8.78 16 25 C 0.05 0.65 6.67 72.02 0.48 1.13 16 26 C -0.14 -1.74 4.95 30.69 0.15 -1.59 16 27 H 0.28 15.38 8.31 -92.71 -0.77 14.60 16 28 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 30 H 0.42 5.65 7.48 -92.71 -0.69 4.95 16 31 H 0.13 2.80 6.83 -2.91 -0.02 2.78 16 32 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.14 2.85 6.30 -2.91 -0.02 2.83 16 35 H 0.09 1.68 6.37 -2.39 -0.02 1.67 16 36 H 0.07 2.08 6.10 -2.39 -0.01 2.07 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 0.98 7.75 -2.38 -0.02 0.96 16 39 H 0.06 0.63 7.06 -2.39 -0.02 0.61 16 40 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.16 354.31 3.47 -68.69 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.33 Total: 17.09 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.29 Total: -20.55 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -1.15 Total: -70.27 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.64 Total: -29.06 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.90 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.19 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.05 Total: -9.19 kcal Total: -72.16 3.47 -68.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173830940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.644 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds