Wall clock time and date at job start Tue Mar 31 2020 23:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47437 * 2 1 4 4 N 1.46494 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00085 * 180.27042 * 4 3 2 6 6 O 1.21611 * 119.99401 * 359.73302 * 5 4 3 7 7 C 1.47371 * 120.00174 * 179.72230 * 5 4 3 8 8 C 1.39770 * 120.19634 * 354.09193 * 7 5 4 9 9 C 1.37683 * 119.93776 * 179.69389 * 8 7 5 10 10 C 1.38770 * 120.34198 * 0.57928 * 9 8 7 11 11 Cl 1.73601 * 119.80239 * 179.73722 * 10 9 8 12 12 C 1.38101 * 120.38973 * 359.72090 * 10 9 8 13 13 C 1.38893 * 120.05799 * 359.97358 * 12 10 9 14 14 N 1.38867 * 120.17168 * 179.97438 * 13 12 10 15 15 C 1.46500 * 120.00196 * 5.47061 * 14 13 12 16 16 C 1.50698 * 109.47356 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00213 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00029 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99880 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00017 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00637 * 179.97438 * 21 19 18 23 23 Si 1.86811 * 119.99784 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46977 * 90.00062 * 23 21 19 25 25 H 1.48494 * 109.46798 * 209.99757 * 23 21 19 26 26 H 1.48495 * 109.46836 * 330.00061 * 23 21 19 27 27 H 1.09008 * 109.46997 * 60.00167 * 1 2 3 28 28 H 1.09000 * 109.46845 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47053 * 300.00072 * 1 2 3 30 30 H 1.09004 * 109.47701 * 239.99760 * 2 1 3 31 31 H 1.09000 * 109.47147 * 120.00114 * 2 1 3 32 32 H 1.08999 * 109.46621 * 59.99624 * 3 2 1 33 33 H 1.09008 * 109.46891 * 299.99898 * 3 2 1 34 34 H 0.96999 * 120.00121 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.02712 * 359.97438 * 8 7 5 36 36 H 1.08006 * 119.83214 * 180.30084 * 9 8 7 37 37 H 1.08003 * 119.97414 * 179.97438 * 12 10 9 38 38 H 0.97006 * 119.99851 * 185.47378 * 14 13 12 39 39 H 1.08998 * 109.47238 * 300.00066 * 15 14 13 40 40 H 1.09003 * 109.46611 * 59.99963 * 15 14 13 41 41 H 0.96999 * 120.00036 * 359.97438 * 18 16 15 42 42 H 0.96996 * 120.00878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0062 6 8 3.5708 3.6628 0.0059 7 6 5.6526 2.6096 0.0130 8 6 6.3550 1.4077 0.1381 9 6 7.7318 1.4132 0.1374 10 6 8.4280 2.6084 0.0253 11 17 10.1640 2.5997 0.0329 12 6 7.7480 3.8046 -0.0927 13 6 6.3592 3.8175 -0.1003 14 7 5.6730 5.0190 -0.2183 15 6 6.4096 6.2630 -0.4554 16 6 5.4390 7.4124 -0.5440 17 8 4.2490 7.2122 -0.4216 18 7 5.8932 8.6628 -0.7602 19 6 5.0103 9.7085 -0.8403 20 1 3.9507 9.5303 -0.7305 21 6 5.4785 10.9977 -1.0626 22 7 4.6322 12.0000 -1.1399 23 14 7.3112 11.3060 -1.2518 24 1 7.6877 11.1891 -2.6835 25 1 7.6364 12.6705 -0.7643 26 1 8.0663 10.3037 -0.4579 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.9900 0.6024 0.0006 35 1 5.8182 0.4752 0.2305 36 1 8.2729 0.4830 0.2293 37 1 8.2966 4.7309 -0.1792 38 1 4.7060 5.0346 -0.1437 39 1 7.1043 6.4362 0.3664 40 1 6.9648 6.1839 -1.3900 41 1 6.8448 8.8229 -0.8584 42 1 4.9591 12.9000 -1.2947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175119425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:23 Heat of formation + Delta-G solvation = -51.135737 kcal Electronic energy + Delta-G solvation = -26175.699806 eV Core-core repulsion = 22181.448678 eV Total energy + Delta-G solvation = -3994.251127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58749 -38.84432 -38.37318 -36.75149 -36.06140 -35.16400 -34.00705 -32.93312 -31.78446 -31.02585 -30.01864 -27.29566 -26.29994 -24.35302 -23.71475 -22.15270 -21.54996 -20.81614 -19.48397 -18.52654 -18.12349 -17.32323 -16.46255 -16.00514 -15.83874 -15.60362 -15.27778 -15.09481 -14.86914 -14.56162 -14.31394 -14.10354 -13.74171 -13.58510 -13.17971 -13.13133 -12.70758 -12.63072 -12.56786 -12.55934 -12.34524 -12.10905 -11.71959 -11.60270 -11.45310 -11.23849 -11.21308 -11.10605 -10.64462 -10.15818 -10.03825 -9.83692 -9.66642 -9.28183 -8.97698 -8.71606 -8.27727 -7.47849 -6.37693 -3.90180 0.65103 1.39207 1.91170 2.75118 2.98784 3.01596 3.03322 3.11920 3.47190 3.57953 3.73032 4.04722 4.45036 4.53381 4.57206 4.63958 4.67524 4.89147 4.98644 5.12123 5.15000 5.28673 5.30772 5.32623 5.41190 5.46890 5.49274 5.68271 5.69380 5.74022 5.79647 5.85007 5.90805 6.00278 6.10474 6.27105 6.43716 7.18733 7.36692 7.50046 7.91733 8.05126 8.39691 8.48927 8.85572 9.32448 9.67600 10.74797 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.008179 B = 0.003234 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.764098 B = 8656.484672 C =12034.270689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.117 3.883 4 N -0.730 5.730 5 C 0.565 3.435 6 O -0.528 6.528 7 C -0.233 4.233 8 C -0.019 4.019 9 C -0.196 4.196 10 C 0.047 3.953 11 Cl -0.071 7.071 12 C -0.210 4.210 13 C 0.298 3.702 14 N -0.691 5.691 15 C 0.094 3.906 16 C 0.439 3.561 17 O -0.564 6.564 18 N -0.579 5.579 19 C -0.308 4.308 20 H 0.121 0.879 21 C 0.044 3.956 22 N -0.876 5.876 23 Si 0.880 3.120 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.268 1.268 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.398 0.602 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.435 0.565 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.373 0.627 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -26.635 2.222 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.383 5.383 5 C 0.355 3.645 6 O -0.405 6.405 7 C -0.242 4.242 8 C -0.038 4.038 9 C -0.217 4.217 10 C 0.019 3.981 11 Cl -0.042 7.042 12 C -0.234 4.234 13 C 0.182 3.818 14 N -0.328 5.328 15 C -0.034 4.034 16 C 0.224 3.776 17 O -0.446 6.446 18 N -0.218 5.218 19 C -0.437 4.437 20 H 0.139 0.861 21 C -0.160 4.160 22 N -0.515 5.515 23 Si 0.706 3.294 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.193 1.193 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.233 0.767 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.206 0.794 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.695 -25.500 2.233 26.025 hybrid contribution 1.643 0.097 -0.141 1.652 sum 6.338 -25.403 2.092 26.265 Atomic orbital electron populations 1.21681 0.94481 1.02071 1.02590 1.21734 0.97106 0.95857 1.02590 1.21436 0.79222 0.97067 1.02960 1.45785 1.07346 1.08327 1.76807 1.18108 0.86822 0.83727 0.75879 1.90587 1.69311 1.30376 1.50249 1.19249 0.92409 0.93026 1.19506 1.20849 0.93413 0.96035 0.93524 1.20546 0.93690 0.96757 1.10755 1.20789 0.84072 0.94645 0.98580 1.98376 1.10274 1.98945 1.96561 1.20528 0.92033 0.98050 1.12780 1.17593 0.90339 0.85735 0.88163 1.45661 1.13012 1.02191 1.71943 1.21194 0.95130 0.85203 1.01896 1.19545 0.89295 0.83647 0.85123 1.90614 1.16225 1.83346 1.54438 1.42107 1.08529 1.06656 1.64517 1.19446 0.92816 0.84451 1.46960 0.86110 1.25055 0.98407 0.95206 0.97301 1.69614 1.34334 0.99993 1.47558 0.86670 0.84693 0.78952 0.79120 1.19447 1.20005 1.19328 0.92211 0.92244 0.92232 0.91334 0.91362 0.91221 0.91174 0.76684 0.85242 0.84986 0.84262 0.71149 0.90000 0.89969 0.79419 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.13 -0.82 6.05 -26.73 -0.16 -0.99 16 3 C 0.12 1.10 5.67 -4.04 -0.02 1.08 16 4 N -0.73 -7.23 5.50 -61.40 -0.34 -7.57 16 5 C 0.57 8.05 7.74 -12.54 -0.10 7.95 16 6 O -0.53 -10.03 13.64 5.27 0.07 -9.96 16 7 C -0.23 -3.02 5.89 -104.80 -0.62 -3.64 16 8 C -0.02 -0.17 9.52 -39.21 -0.37 -0.55 16 9 C -0.20 -1.83 9.80 -39.59 -0.39 -2.22 16 10 C 0.05 0.52 6.32 -39.44 -0.25 0.27 16 11 Cl -0.07 -0.71 28.94 -51.86 -1.50 -2.21 16 12 C -0.21 -2.65 9.07 -39.39 -0.36 -3.01 16 13 C 0.30 4.39 6.65 -83.62 -0.56 3.84 16 14 N -0.69 -12.35 5.56 -59.63 -0.33 -12.68 16 15 C 0.09 1.62 5.42 -5.19 -0.03 1.60 16 16 C 0.44 10.15 7.85 -10.98 -0.09 10.06 16 17 O -0.56 -15.63 15.24 5.55 0.08 -15.54 16 18 N -0.58 -13.77 5.09 -10.97 -0.06 -13.82 16 19 C -0.31 -8.72 10.16 -14.94 -0.15 -8.87 16 20 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 21 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 22 N -0.88 -25.46 13.96 55.50 0.77 -24.68 16 23 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 27 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.40 2.59 6.53 -40.82 -0.27 2.32 16 35 H 0.13 0.72 6.45 -52.49 -0.34 0.38 16 36 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.14 1.63 6.72 -52.48 -0.35 1.27 16 38 H 0.43 9.12 3.94 -40.95 -0.16 8.95 16 39 H 0.08 1.20 7.73 -51.93 -0.40 0.80 16 40 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 41 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 42 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -34.56 367.97 -8.40 -42.95 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -5.12 Total: 17.46 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.82 Total: 6.11 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.05 Total: -58.75 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.16 Total: -25.51 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.56 -8.40 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175119425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.182 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds