Wall clock time and date at job start Tue Mar 31 2020 23:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47437 * 2 1 4 4 N 1.46494 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00085 * 180.27042 * 4 3 2 6 6 O 1.21611 * 119.99401 * 359.73302 * 5 4 3 7 7 C 1.47371 * 120.00174 * 179.72230 * 5 4 3 8 8 C 1.39770 * 120.19634 * 354.09193 * 7 5 4 9 9 C 1.37683 * 119.93776 * 179.69389 * 8 7 5 10 10 C 1.38770 * 120.34198 * 0.57928 * 9 8 7 11 11 Cl 1.73601 * 119.80239 * 179.73722 * 10 9 8 12 12 C 1.38101 * 120.38973 * 359.72090 * 10 9 8 13 13 C 1.38893 * 120.05799 * 359.97358 * 12 10 9 14 14 N 1.38867 * 120.17168 * 179.97438 * 13 12 10 15 15 C 1.46500 * 120.00196 * 5.47061 * 14 13 12 16 16 C 1.50698 * 109.47356 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00213 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00029 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99880 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00017 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00637 * 179.97438 * 21 19 18 23 23 Si 1.86811 * 119.99784 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46977 * 90.00062 * 23 21 19 25 25 H 1.48494 * 109.46798 * 209.99757 * 23 21 19 26 26 H 1.48495 * 109.46836 * 330.00061 * 23 21 19 27 27 H 1.09008 * 109.46997 * 60.00167 * 1 2 3 28 28 H 1.09000 * 109.46845 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47053 * 300.00072 * 1 2 3 30 30 H 1.09004 * 109.47701 * 239.99760 * 2 1 3 31 31 H 1.09000 * 109.47147 * 120.00114 * 2 1 3 32 32 H 1.08999 * 109.46621 * 59.99624 * 3 2 1 33 33 H 1.09008 * 109.46891 * 299.99898 * 3 2 1 34 34 H 0.96999 * 120.00121 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.02712 * 359.97438 * 8 7 5 36 36 H 1.08006 * 119.83214 * 180.30084 * 9 8 7 37 37 H 1.08003 * 119.97414 * 179.97438 * 12 10 9 38 38 H 0.97006 * 119.99851 * 185.47378 * 14 13 12 39 39 H 1.08998 * 109.47238 * 300.00066 * 15 14 13 40 40 H 1.09003 * 109.46611 * 59.99963 * 15 14 13 41 41 H 0.96999 * 120.00036 * 359.97438 * 18 16 15 42 42 H 0.96996 * 120.00878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0062 6 8 3.5708 3.6628 0.0059 7 6 5.6526 2.6096 0.0130 8 6 6.3550 1.4077 0.1381 9 6 7.7318 1.4132 0.1374 10 6 8.4280 2.6084 0.0253 11 17 10.1640 2.5997 0.0329 12 6 7.7480 3.8046 -0.0927 13 6 6.3592 3.8175 -0.1003 14 7 5.6730 5.0190 -0.2183 15 6 6.4096 6.2630 -0.4554 16 6 5.4390 7.4124 -0.5440 17 8 4.2490 7.2122 -0.4216 18 7 5.8932 8.6628 -0.7602 19 6 5.0103 9.7085 -0.8403 20 1 3.9507 9.5303 -0.7305 21 6 5.4785 10.9977 -1.0626 22 7 4.6322 12.0000 -1.1399 23 14 7.3112 11.3060 -1.2518 24 1 7.6877 11.1891 -2.6835 25 1 7.6364 12.6705 -0.7643 26 1 8.0663 10.3037 -0.4579 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.9900 0.6024 0.0006 35 1 5.8182 0.4752 0.2305 36 1 8.2729 0.4830 0.2293 37 1 8.2966 4.7309 -0.1792 38 1 4.7060 5.0346 -0.1437 39 1 7.1043 6.4362 0.3664 40 1 6.9648 6.1839 -1.3900 41 1 6.8448 8.8229 -0.8584 42 1 4.9591 12.9000 -1.2947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175119425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:23 Heat of formation + Delta-G solvation = -77.551618 kcal Electronic energy + Delta-G solvation = -26176.845284 eV Core-core repulsion = 22181.448678 eV Total energy + Delta-G solvation = -3995.396606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62215 -40.46922 -39.54243 -37.63296 -36.98543 -36.41644 -35.85007 -33.87641 -33.74382 -31.88011 -31.14014 -28.61239 -27.24001 -26.05773 -24.63711 -22.97304 -22.41225 -21.89357 -21.33139 -20.35709 -19.13015 -18.46564 -17.47519 -17.31790 -17.05561 -16.82751 -16.50930 -16.47148 -16.12535 -15.57185 -15.44375 -15.38879 -14.90198 -14.68417 -14.55432 -14.34914 -13.97995 -13.94942 -13.81231 -13.49145 -13.48074 -13.02014 -12.91377 -12.58299 -12.51283 -12.46945 -12.04786 -12.01182 -11.88504 -11.75690 -11.60831 -11.12574 -10.95508 -10.66663 -10.35217 -10.25818 -9.82518 -8.54499 -8.47648 -6.10837 -0.25375 0.52285 1.08802 1.28320 1.32694 1.43152 1.74984 1.77632 2.14116 2.18699 2.23137 2.79685 2.90028 3.07679 3.72009 3.77967 3.93752 3.94086 4.06984 4.18486 4.22163 4.25599 4.34545 4.36603 4.44086 4.63640 4.64537 4.75378 4.85262 4.97532 5.13650 5.19535 5.24061 5.27701 5.30455 5.44448 5.45441 5.62652 5.83349 6.15781 6.48128 6.52313 6.69746 6.76607 7.24933 7.29344 7.79135 8.69602 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.008179 B = 0.003234 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.764098 B = 8656.484672 C =12034.270689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C 0.114 3.886 4 N -0.708 5.708 5 C 0.556 3.444 6 O -0.586 6.586 7 C -0.245 4.245 8 C -0.005 4.005 9 C -0.181 4.181 10 C 0.043 3.957 11 Cl -0.059 7.059 12 C -0.216 4.216 13 C 0.271 3.729 14 N -0.721 5.721 15 C 0.110 3.890 16 C 0.437 3.563 17 O -0.618 6.618 18 N -0.576 5.576 19 C -0.335 4.335 20 H 0.054 0.946 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.966 3.034 24 H -0.254 1.254 25 H -0.272 1.272 26 H -0.228 1.228 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.418 0.582 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.146 0.854 38 H 0.418 0.582 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.394 0.606 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.169 -30.226 2.300 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.010 4.010 4 N -0.361 5.361 5 C 0.346 3.654 6 O -0.468 6.468 7 C -0.254 4.254 8 C -0.024 4.024 9 C -0.202 4.202 10 C 0.015 3.985 11 Cl -0.030 7.030 12 C -0.240 4.240 13 C 0.159 3.841 14 N -0.359 5.359 15 C -0.018 4.018 16 C 0.225 3.775 17 O -0.504 6.504 18 N -0.217 5.217 19 C -0.464 4.464 20 H 0.072 0.928 21 C -0.211 4.211 22 N -0.569 5.569 23 Si 0.785 3.215 24 H -0.178 1.178 25 H -0.197 1.197 26 H -0.151 1.151 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.257 0.743 35 H 0.189 0.811 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.269 0.731 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.230 0.770 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.033 -29.202 2.316 30.655 hybrid contribution 0.214 1.041 -0.140 1.072 sum 9.246 -28.160 2.176 29.719 Atomic orbital electron populations 1.21712 0.94487 1.02933 1.01939 1.21680 0.96970 0.93196 1.04168 1.21494 0.78996 0.99382 1.01136 1.45642 1.07533 1.08073 1.74833 1.18527 0.87710 0.83844 0.75296 1.90574 1.70482 1.32603 1.53105 1.19418 0.91728 0.94074 1.20196 1.21252 0.93614 0.96083 0.91418 1.20986 0.93686 0.97427 1.08114 1.20969 0.84794 0.94726 0.97982 1.98387 1.09224 1.98921 1.96431 1.20601 0.91107 0.99225 1.13029 1.17895 0.91277 0.85160 0.89766 1.45654 1.12384 1.03272 1.74579 1.21156 0.93401 0.82596 1.04685 1.20740 0.89668 0.84762 0.82357 1.90592 1.19369 1.84421 1.56008 1.41869 1.08872 1.05930 1.64983 1.18999 0.91025 0.86849 1.49576 0.92819 1.26176 1.05508 0.93810 0.95573 1.69795 1.37862 1.00877 1.48326 0.85363 0.76057 0.79751 0.80376 1.17839 1.19704 1.15068 0.93024 0.90531 0.92882 0.89771 0.89585 0.93037 0.93283 0.74343 0.81069 0.81724 0.83585 0.73148 0.86879 0.86867 0.76974 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.27 6.05 30.59 0.19 -1.09 16 3 C 0.11 2.19 5.67 86.38 0.49 2.68 16 4 N -0.71 -13.36 5.50 -466.42 -2.57 -15.93 16 5 C 0.56 16.08 7.74 86.65 0.67 16.75 16 6 O -0.59 -23.97 13.64 -4.07 -0.06 -24.02 16 7 C -0.25 -6.07 5.89 -19.98 -0.12 -6.18 16 8 C 0.00 -0.07 9.52 22.51 0.21 0.15 16 9 C -0.18 -2.55 9.80 22.27 0.22 -2.34 16 10 C 0.04 0.80 6.32 22.36 0.14 0.94 16 11 Cl -0.06 -0.96 28.94 -2.72 -0.08 -1.04 16 12 C -0.22 -4.94 9.07 22.39 0.20 -4.74 16 13 C 0.27 7.80 6.65 38.71 0.26 8.06 16 14 N -0.72 -26.39 5.56 -342.56 -1.90 -28.30 16 15 C 0.11 3.71 5.42 85.63 0.46 4.17 16 16 C 0.44 20.99 7.85 87.66 0.69 21.68 16 17 O -0.62 -36.98 15.24 -3.06 -0.05 -37.03 16 18 N -0.58 -27.84 5.09 -306.99 -1.56 -29.40 16 19 C -0.34 -20.09 10.16 84.04 0.85 -19.23 16 20 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 22 N -0.93 -56.42 13.96 21.66 0.30 -56.12 16 23 Si 0.97 38.58 27.74 68.60 1.90 40.48 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.23 -7.56 6.52 99.48 0.65 -6.92 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.63 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 34 H 0.42 4.15 6.53 -92.71 -0.61 3.54 16 35 H 0.17 0.97 6.45 -2.91 -0.02 0.95 16 36 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.15 3.01 6.72 -2.91 -0.02 2.99 16 38 H 0.42 18.72 3.94 -94.82 -0.37 18.35 16 39 H 0.11 3.08 7.73 -2.39 -0.02 3.06 16 40 H 0.11 3.08 8.12 -2.39 -0.02 3.07 16 41 H 0.39 15.40 5.76 -92.71 -0.53 14.87 16 42 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -86.33 367.97 0.96 -85.37 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: -0.48 Total: 46.27 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 5.45 Total: 19.72 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -5.73 Total: -129.74 kcal Atomic # 8 Polarization: -60.95 SS G_CDS: -0.10 Total: -61.05 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.48 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -86.33 0.96 -85.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175119425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.820 kcal (2) G-P(sol) polarization free energy of solvation -86.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds