Wall clock time and date at job start Tue Mar 31 2020 23:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46778 * 2 1 4 4 N 1.46505 * 109.46730 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00194 * 179.97438 * 4 3 2 6 6 O 1.21610 * 119.99808 * 0.02562 * 5 4 3 7 7 C 1.47441 * 120.00413 * 179.97438 * 5 4 3 8 8 C 1.39823 * 120.07947 * 0.02562 * 7 5 4 9 9 C 1.36569 * 120.07058 * 179.97438 * 8 7 5 10 10 C 1.39259 * 120.23284 * 0.04081 * 9 8 7 11 11 N 1.39056 * 119.92180 * 179.97438 * 10 9 8 12 12 C 1.46491 * 120.00094 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 10 14 14 O 1.21293 * 120.00255 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72354 * 13 12 11 16 16 C 1.37101 * 120.00327 * 180.27606 * 15 13 12 17 17 H 1.08001 * 119.99426 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00412 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00325 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47047 * 89.99811 * 20 18 16 22 22 H 1.48501 * 109.47447 * 210.00167 * 20 18 16 23 23 H 1.48499 * 109.46902 * 330.00508 * 20 18 16 24 24 C 1.39148 * 120.16274 * 0.24884 * 10 9 8 25 25 C 1.37848 * 119.92386 * 359.43396 * 24 10 9 26 26 Cl 1.73606 * 120.11399 * 180.26872 * 25 24 10 27 27 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46822 * 300.00364 * 1 2 3 29 29 H 1.09004 * 109.46779 * 60.00015 * 1 2 3 30 30 H 1.08999 * 109.46748 * 240.00096 * 2 1 3 31 31 H 1.08996 * 109.46933 * 120.00266 * 2 1 3 32 32 H 1.08999 * 109.47403 * 60.00497 * 3 2 1 33 33 H 1.08999 * 109.47117 * 299.99277 * 3 2 1 34 34 H 0.97006 * 120.00038 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.96876 * 359.96999 * 8 7 5 36 36 H 1.08002 * 119.88508 * 180.02562 * 9 8 7 37 37 H 0.97003 * 119.99346 * 359.97438 * 11 10 9 38 38 H 1.09004 * 109.47166 * 60.00005 * 12 11 10 39 39 H 1.08994 * 109.47507 * 299.99711 * 12 11 10 40 40 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 41 41 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.03887 * 179.72724 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5709 3.6628 -0.0002 7 6 5.6533 2.6097 0.0014 8 6 6.3542 1.3998 0.0024 9 6 7.7199 1.4001 0.0030 10 6 8.4208 2.6034 0.0034 11 7 9.8114 2.5961 0.0046 12 6 10.5505 3.8608 0.0044 13 6 12.0306 3.5776 0.0064 14 8 12.4290 2.4320 0.0073 15 7 12.9119 4.5974 0.0010 16 6 14.2585 4.3398 -0.0029 17 1 14.6130 3.3197 -0.0021 18 6 15.1669 5.3911 -0.0079 19 7 14.7355 6.6324 -0.0083 20 14 17.0016 5.0401 -0.0125 21 1 17.4837 4.9439 -1.4138 22 1 17.7178 6.1395 0.6830 23 1 17.2620 3.7577 0.6895 24 6 7.7332 3.8131 0.0085 25 6 6.3548 3.8205 0.0013 26 17 5.4919 5.3270 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9901 0.6024 0.0006 35 1 5.8150 0.4640 0.0028 36 1 8.2582 0.4637 0.0034 37 1 10.2919 1.7534 0.0054 38 1 10.2894 4.4343 0.8939 39 1 10.2910 4.4333 -0.8860 40 1 12.5934 5.5136 0.0001 41 1 15.3696 7.3663 -0.0115 42 1 8.2788 4.7450 0.0133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175122289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:57 Heat of formation + Delta-G solvation = -57.108079 kcal Electronic energy + Delta-G solvation = -25348.698745 eV Core-core repulsion = 21354.188637 eV Total energy + Delta-G solvation = -3994.510108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.32658 -39.12620 -38.24996 -36.49118 -35.90428 -35.17688 -34.07512 -32.88577 -31.50536 -30.92175 -30.13407 -27.42157 -26.24730 -24.66817 -22.94430 -22.53752 -21.95006 -20.48816 -19.57366 -18.32545 -18.11786 -17.33905 -16.50320 -16.04635 -15.68011 -15.63992 -15.05511 -15.04395 -14.64640 -14.60186 -14.35223 -14.15496 -13.80391 -13.64395 -13.47165 -13.22570 -12.76344 -12.64255 -12.43228 -12.36535 -12.35691 -11.69240 -11.57404 -11.52487 -11.34993 -11.29424 -11.18519 -11.02960 -10.52072 -10.38771 -10.08241 -9.71529 -9.50861 -9.22949 -8.92125 -8.75168 -8.19503 -7.51505 -6.59742 -4.02153 0.90304 1.19708 2.20538 2.89245 3.02824 3.05913 3.17294 3.21501 3.37415 3.62255 3.77604 4.04865 4.42045 4.56234 4.57274 4.68714 4.73629 4.84108 5.00885 5.07774 5.18784 5.22519 5.23094 5.34601 5.38628 5.48187 5.56629 5.60232 5.71567 5.72047 5.79010 5.94993 6.01593 6.08561 6.12925 6.27171 6.46753 7.15989 7.36565 7.38357 7.73173 7.85305 8.19638 8.35167 8.96170 9.28966 9.76429 10.56867 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.001871 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.476412 B =14961.661001 C =15919.061348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.121 3.879 4 N -0.735 5.735 5 C 0.562 3.438 6 O -0.527 6.527 7 C -0.216 4.216 8 C -0.022 4.022 9 C -0.206 4.206 10 C 0.270 3.730 11 N -0.705 5.705 12 C 0.104 3.896 13 C 0.426 3.574 14 O -0.596 6.596 15 N -0.547 5.547 16 C -0.307 4.307 17 H 0.106 0.894 18 C 0.028 3.972 19 N -0.893 5.893 20 Si 0.934 3.066 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.215 4.215 25 C 0.075 3.925 26 Cl -0.038 7.038 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.397 0.603 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.416 0.584 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.275 0.725 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.855 -9.887 0.022 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.003 4.003 4 N -0.389 5.389 5 C 0.351 3.649 6 O -0.403 6.403 7 C -0.222 4.222 8 C -0.041 4.041 9 C -0.229 4.229 10 C 0.159 3.841 11 N -0.331 5.331 12 C -0.024 4.024 13 C 0.212 3.788 14 O -0.482 6.482 15 N -0.181 5.181 16 C -0.437 4.437 17 H 0.124 0.876 18 C -0.176 4.176 19 N -0.533 5.533 20 Si 0.760 3.240 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.239 4.239 25 C 0.047 3.953 26 Cl -0.008 7.008 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.256 0.744 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.085 0.915 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.832 -9.343 0.029 24.670 hybrid contribution 1.190 -0.102 -0.015 1.195 sum -21.642 -9.445 0.013 23.613 Atomic orbital electron populations 1.21678 0.94588 1.02104 1.02366 1.21746 0.96980 0.96008 1.02725 1.21350 0.79573 0.96894 1.02443 1.45903 1.07129 1.08629 1.77239 1.18041 0.87023 0.83631 0.76179 1.90855 1.69918 1.30487 1.49085 1.19237 0.92824 0.92639 1.17519 1.20561 0.93602 0.96053 0.93928 1.20339 0.94138 0.96811 1.11616 1.17888 0.83898 0.93272 0.89030 1.44603 1.01864 1.09786 1.76864 1.21118 0.92229 0.86455 1.02641 1.19622 0.86773 0.86373 0.86063 1.90511 1.79301 1.21060 1.57371 1.41793 1.06244 1.07700 1.62373 1.19732 0.80306 0.95141 1.48489 0.87649 1.25329 1.01086 0.94575 0.96581 1.69603 1.36223 0.98478 1.48977 0.85803 0.81353 0.78276 0.78560 1.20202 1.20722 1.19292 1.20506 0.91976 0.97915 1.13479 1.20639 0.91464 0.87181 0.96058 1.98405 1.76679 1.29830 1.95911 0.92231 0.92335 0.92342 0.91304 0.91302 0.91547 0.91544 0.76813 0.85411 0.84980 0.74383 0.89975 0.89959 0.77056 0.91487 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.14 -0.68 6.05 -26.73 -0.16 -0.84 16 3 C 0.12 0.94 5.67 -4.04 -0.02 0.91 16 4 N -0.74 -6.44 5.50 -61.37 -0.34 -6.78 16 5 C 0.56 7.06 7.75 -12.52 -0.10 6.96 16 6 O -0.53 -8.27 13.96 5.27 0.07 -8.20 16 7 C -0.22 -2.65 5.88 -104.92 -0.62 -3.27 16 8 C -0.02 -0.21 9.48 -39.59 -0.38 -0.59 16 9 C -0.21 -2.24 9.82 -39.80 -0.39 -2.63 16 10 C 0.27 3.52 6.65 -83.87 -0.56 2.97 16 11 N -0.70 -10.32 5.68 -59.82 -0.34 -10.66 16 12 C 0.10 1.65 5.38 -5.20 -0.03 1.62 16 13 C 0.43 9.19 7.85 -10.98 -0.09 9.11 16 14 O -0.60 -14.72 15.24 5.55 0.08 -14.63 16 15 N -0.55 -12.90 5.29 -10.96 -0.06 -12.95 16 16 C -0.31 -8.10 9.68 -14.93 -0.14 -8.25 16 17 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 18 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 19 N -0.89 -23.11 13.05 55.50 0.72 -22.38 16 20 Si 0.93 20.04 29.55 -169.99 -5.02 15.02 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C -0.21 -2.85 9.07 -39.39 -0.36 -3.21 16 25 C 0.08 1.03 6.35 -39.09 -0.25 0.78 16 26 Cl -0.04 -0.54 26.02 -51.86 -1.35 -1.89 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.40 2.40 6.49 -40.82 -0.26 2.13 16 35 H 0.13 0.78 6.39 -52.48 -0.34 0.44 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.42 6.40 7.44 -40.82 -0.30 6.09 16 38 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 39 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 40 H 0.40 8.88 7.90 -40.82 -0.32 8.56 16 41 H 0.28 6.74 8.31 -40.82 -0.34 6.41 16 42 H 0.14 1.76 6.70 -52.49 -0.35 1.41 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -31.18 371.95 -8.73 -39.91 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.29 Total: 13.10 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -2.81 Total: 3.87 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.01 Total: -52.78 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.16 Total: -22.83 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.35 Total: -1.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.18 -8.73 -39.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175122289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.202 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds