Wall clock time and date at job start Tue Mar 31 2020 23:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46778 * 2 1 4 4 N 1.46505 * 109.46730 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00194 * 179.97438 * 4 3 2 6 6 O 1.21610 * 119.99808 * 0.02562 * 5 4 3 7 7 C 1.47441 * 120.00413 * 179.97438 * 5 4 3 8 8 C 1.39823 * 120.07947 * 0.02562 * 7 5 4 9 9 C 1.36569 * 120.07058 * 179.97438 * 8 7 5 10 10 C 1.39259 * 120.23284 * 0.04081 * 9 8 7 11 11 N 1.39056 * 119.92180 * 179.97438 * 10 9 8 12 12 C 1.46491 * 120.00094 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 10 14 14 O 1.21293 * 120.00255 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72354 * 13 12 11 16 16 C 1.37101 * 120.00327 * 180.27606 * 15 13 12 17 17 H 1.08001 * 119.99426 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00412 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00325 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47047 * 89.99811 * 20 18 16 22 22 H 1.48501 * 109.47447 * 210.00167 * 20 18 16 23 23 H 1.48499 * 109.46902 * 330.00508 * 20 18 16 24 24 C 1.39148 * 120.16274 * 0.24884 * 10 9 8 25 25 C 1.37848 * 119.92386 * 359.43396 * 24 10 9 26 26 Cl 1.73606 * 120.11399 * 180.26872 * 25 24 10 27 27 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46822 * 300.00364 * 1 2 3 29 29 H 1.09004 * 109.46779 * 60.00015 * 1 2 3 30 30 H 1.08999 * 109.46748 * 240.00096 * 2 1 3 31 31 H 1.08996 * 109.46933 * 120.00266 * 2 1 3 32 32 H 1.08999 * 109.47403 * 60.00497 * 3 2 1 33 33 H 1.08999 * 109.47117 * 299.99277 * 3 2 1 34 34 H 0.97006 * 120.00038 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.96876 * 359.96999 * 8 7 5 36 36 H 1.08002 * 119.88508 * 180.02562 * 9 8 7 37 37 H 0.97003 * 119.99346 * 359.97438 * 11 10 9 38 38 H 1.09004 * 109.47166 * 60.00005 * 12 11 10 39 39 H 1.08994 * 109.47507 * 299.99711 * 12 11 10 40 40 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 41 41 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.03887 * 179.72724 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5709 3.6628 -0.0002 7 6 5.6533 2.6097 0.0014 8 6 6.3542 1.3998 0.0024 9 6 7.7199 1.4001 0.0030 10 6 8.4208 2.6034 0.0034 11 7 9.8114 2.5961 0.0046 12 6 10.5505 3.8608 0.0044 13 6 12.0306 3.5776 0.0064 14 8 12.4290 2.4320 0.0073 15 7 12.9119 4.5974 0.0010 16 6 14.2585 4.3398 -0.0029 17 1 14.6130 3.3197 -0.0021 18 6 15.1669 5.3911 -0.0079 19 7 14.7355 6.6324 -0.0083 20 14 17.0016 5.0401 -0.0125 21 1 17.4837 4.9439 -1.4138 22 1 17.7178 6.1395 0.6830 23 1 17.2620 3.7577 0.6895 24 6 7.7332 3.8131 0.0085 25 6 6.3548 3.8205 0.0013 26 17 5.4919 5.3270 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9901 0.6024 0.0006 35 1 5.8150 0.4640 0.0028 36 1 8.2582 0.4637 0.0034 37 1 10.2919 1.7534 0.0054 38 1 10.2894 4.4343 0.8939 39 1 10.2910 4.4333 -0.8860 40 1 12.5934 5.5136 0.0001 41 1 15.3696 7.3663 -0.0115 42 1 8.2788 4.7450 0.0133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175122289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:57 Heat of formation + Delta-G solvation = -78.490901 kcal Electronic energy + Delta-G solvation = -25349.625974 eV Core-core repulsion = 21354.188637 eV Total energy + Delta-G solvation = -3995.437336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28955 -40.46210 -39.58427 -37.52724 -36.64309 -36.45809 -35.80137 -33.56993 -33.38270 -31.86936 -31.19213 -28.68416 -27.04868 -26.30744 -23.83523 -23.58444 -22.50181 -21.45456 -21.15514 -20.04538 -19.24548 -18.45725 -17.51798 -17.21958 -16.73209 -16.68922 -16.42511 -16.35765 -15.90253 -15.71125 -15.47392 -15.26285 -15.03605 -14.63074 -14.61027 -13.97844 -13.83322 -13.74822 -13.63928 -13.48518 -13.28433 -12.95275 -12.90171 -12.57697 -12.46890 -12.35252 -12.13815 -12.01285 -11.96298 -11.70454 -11.58124 -11.11588 -10.56653 -10.52260 -10.10520 -10.03661 -9.87995 -8.55557 -8.52232 -6.02177 -0.07250 0.28575 1.18929 1.35610 1.42498 1.54360 1.89812 1.94784 2.12784 2.25624 2.35725 2.83644 3.12618 3.15411 3.72654 3.84885 4.00452 4.09484 4.13199 4.14618 4.27523 4.35641 4.39779 4.42458 4.45226 4.64049 4.71716 4.80170 4.89549 5.07116 5.16934 5.20061 5.22548 5.29112 5.37066 5.38580 5.51876 5.57442 5.87535 6.11662 6.48083 6.61123 6.62794 7.03479 7.32854 7.43888 7.94929 8.64311 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.001871 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.476412 B =14961.661001 C =15919.061348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.120 3.880 4 N -0.718 5.718 5 C 0.556 3.444 6 O -0.565 6.565 7 C -0.221 4.221 8 C -0.007 4.007 9 C -0.199 4.199 10 C 0.259 3.741 11 N -0.712 5.712 12 C 0.119 3.881 13 C 0.430 3.570 14 O -0.627 6.627 15 N -0.559 5.559 16 C -0.339 4.339 17 H 0.084 0.916 18 C -0.008 4.008 19 N -0.914 5.914 20 Si 0.994 3.006 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.271 1.271 24 C -0.221 4.221 25 C 0.056 3.944 26 Cl -0.054 7.054 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.413 0.587 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.413 0.587 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.400 0.600 41 H 0.280 0.720 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.630 -11.791 0.009 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.004 4.004 4 N -0.371 5.371 5 C 0.345 3.655 6 O -0.445 6.445 7 C -0.227 4.227 8 C -0.027 4.027 9 C -0.222 4.222 10 C 0.150 3.850 11 N -0.340 5.340 12 C -0.009 4.009 13 C 0.218 3.782 14 O -0.516 6.516 15 N -0.195 5.195 16 C -0.468 4.468 17 H 0.102 0.898 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.818 3.182 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.245 4.245 25 C 0.028 3.972 26 Cl -0.024 7.024 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.250 0.750 35 H 0.188 0.812 36 H 0.173 0.827 37 H 0.252 0.748 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.234 0.766 41 H 0.089 0.911 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.650 -11.277 0.014 26.201 hybrid contribution 1.283 0.393 -0.011 1.342 sum -22.367 -10.884 0.003 24.875 Atomic orbital electron populations 1.21695 0.94323 1.02740 1.02113 1.21696 0.97099 0.93911 1.03772 1.21429 0.78823 0.98780 1.01355 1.45792 1.07634 1.08260 1.75463 1.18197 0.87220 0.84059 0.76013 1.90838 1.70561 1.32073 1.51055 1.19467 0.92980 0.93137 1.17110 1.20945 0.93263 0.96686 0.91763 1.20660 0.94584 0.96884 1.10059 1.18036 0.83077 0.94074 0.89856 1.44477 1.02394 1.08802 1.78306 1.20960 0.88031 0.87618 1.04330 1.20537 0.88888 0.85379 0.83442 1.90485 1.80664 1.22387 1.58021 1.41841 1.05841 1.08347 1.63460 1.19706 0.82044 0.94565 1.50484 0.89790 1.26066 1.04780 0.94262 0.95790 1.69663 1.37520 0.98982 1.49244 0.84907 0.76576 0.78075 0.78683 1.19617 1.19676 1.19581 1.20531 0.91938 0.98267 1.13739 1.20815 0.91709 0.87239 0.97479 1.98394 1.76990 1.30932 1.96098 0.91108 0.92647 0.92654 0.90205 0.90203 0.92709 0.92704 0.74952 0.81157 0.82682 0.74772 0.88218 0.88216 0.76605 0.91087 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.37 16 2 C -0.13 -0.94 6.05 30.60 0.19 -0.75 16 3 C 0.12 1.68 5.67 86.38 0.49 2.17 16 4 N -0.72 -10.93 5.50 -466.35 -2.57 -13.50 16 5 C 0.56 13.25 7.75 86.67 0.67 13.92 16 6 O -0.57 -17.77 13.96 -4.06 -0.06 -17.82 16 7 C -0.22 -5.03 5.88 -20.06 -0.12 -5.15 16 8 C -0.01 -0.11 9.48 22.26 0.21 0.10 16 9 C -0.20 -3.70 9.82 22.12 0.22 -3.49 16 10 C 0.26 6.28 6.65 38.46 0.26 6.53 16 11 N -0.71 -19.92 5.68 -343.18 -1.95 -21.87 16 12 C 0.12 3.67 5.38 85.64 0.46 4.13 16 13 C 0.43 18.62 7.85 87.66 0.69 19.31 16 14 O -0.63 -31.31 15.24 -3.07 -0.05 -31.35 16 15 N -0.56 -26.76 5.29 -306.98 -1.62 -28.39 16 16 C -0.34 -18.19 9.68 84.04 0.81 -17.38 16 17 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 18 C -0.01 -0.41 5.50 84.92 0.47 0.06 16 19 N -0.91 -47.31 13.05 21.66 0.28 -47.03 16 20 Si 0.99 41.00 29.55 68.60 2.03 43.02 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 C -0.22 -5.64 9.07 22.40 0.20 -5.44 16 25 C 0.06 1.50 6.35 22.59 0.14 1.64 16 26 Cl -0.05 -1.56 26.02 -2.72 -0.07 -1.63 16 27 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.05 0.43 8.14 -2.38 -0.02 0.42 16 29 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.41 3.45 6.49 -92.70 -0.60 2.85 16 35 H 0.17 1.20 6.39 -2.91 -0.02 1.18 16 36 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.41 12.23 7.44 -92.71 -0.69 11.55 16 38 H 0.10 2.76 7.92 -2.38 -0.02 2.74 16 39 H 0.10 2.76 7.94 -2.39 -0.02 2.74 16 40 H 0.40 18.16 7.90 -92.71 -0.73 17.43 16 41 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 42 H 0.14 3.45 6.70 -2.91 -0.02 3.43 16 Total: -1.00 -68.89 371.95 0.47 -68.42 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.93 Total: 34.86 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 5.40 Total: 15.29 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -5.86 Total: -110.78 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.10 Total: -49.18 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -68.89 0.47 -68.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175122289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.071 kcal (2) G-P(sol) polarization free energy of solvation -68.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds