Wall clock time and date at job start Tue Mar 31 2020 23:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47381 * 2 1 4 4 N 1.46497 * 109.46616 * 119.99995 * 2 1 3 5 5 C 1.34780 * 120.00046 * 155.00124 * 4 2 1 6 6 O 1.21554 * 119.99921 * 359.97438 * 5 4 2 7 7 C 1.47805 * 119.99950 * 179.97438 * 5 4 2 8 8 C 1.39634 * 120.10112 * 0.24961 * 7 5 4 9 9 C 1.37944 * 120.01294 * 180.30106 * 8 7 5 10 10 C 1.38372 * 120.21084 * 359.44416 * 9 8 7 11 11 Cl 1.73598 * 119.89907 * 180.25964 * 10 9 8 12 12 C 1.39107 * 120.20147 * 0.28162 * 10 9 8 13 13 N 1.39784 * 120.01088 * 180.02562 * 12 10 9 14 14 C 1.46497 * 120.00328 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47433 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99775 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00203 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99957 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00072 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00024 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99969 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 119.99791 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47432 * 89.99844 * 22 20 18 24 24 H 1.48508 * 109.47089 * 209.99705 * 22 20 18 25 25 H 1.48501 * 109.47198 * 329.99467 * 22 20 18 26 26 C 1.38591 * 119.98464 * 359.97438 * 12 10 9 27 27 H 1.08996 * 109.47044 * 300.00359 * 1 2 3 28 28 H 1.09001 * 109.46576 * 60.00340 * 1 2 3 29 29 H 1.08996 * 109.47440 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47044 * 239.99641 * 2 1 3 31 31 H 1.09004 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46988 * 299.99408 * 3 2 1 33 33 H 1.08996 * 109.47325 * 59.99813 * 3 2 1 34 34 H 0.97001 * 120.00116 * 334.99866 * 4 2 1 35 35 H 1.08001 * 119.99488 * 0.02562 * 8 7 5 36 36 H 1.08002 * 119.89743 * 179.72847 * 9 8 7 37 37 H 0.97006 * 120.00105 * 359.97438 * 13 12 10 38 38 H 1.09006 * 109.47046 * 299.99882 * 14 13 12 39 39 H 1.09005 * 109.47470 * 59.99676 * 14 13 12 40 40 H 0.97001 * 119.99864 * 359.97438 * 17 15 14 41 41 H 0.97000 * 120.00074 * 179.97438 * 21 20 18 42 42 H 1.07998 * 120.10949 * 179.97438 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2402 -1.2592 1.1945 6 8 3.9370 -1.1994 0.2003 7 6 3.7330 -1.9555 2.4016 8 6 2.9322 -2.0300 3.5430 9 6 3.3964 -2.6749 4.6706 10 6 4.6505 -3.2596 4.6717 11 17 5.2239 -4.0750 6.0930 12 6 5.4534 -3.1957 3.5376 13 7 6.7194 -3.7882 3.5429 14 6 7.5646 -3.7213 2.3482 15 6 8.8673 -4.4308 2.6140 16 8 9.0700 -4.9416 3.6952 17 7 9.8072 -4.4976 1.6503 18 6 10.9920 -5.1435 1.8919 19 1 11.1722 -5.5991 2.8544 20 6 11.9608 -5.2128 0.8982 21 7 13.0967 -5.8315 1.1300 22 14 11.6489 -4.4255 -0.7667 23 1 12.1254 -3.0192 -0.7464 24 1 12.3796 -5.1806 -1.8161 25 1 10.1936 -4.4508 -1.0614 26 6 4.9974 -2.5453 2.4019 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1302 1.4424 0.0005 32 1 1.6769 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.4621 -0.7387 1.9895 35 1 1.9510 -1.5787 3.5446 36 1 2.7772 -2.7276 5.5540 37 1 7.0384 -4.2438 4.3377 38 1 7.0529 -4.2010 1.5138 39 1 7.7631 -2.6783 2.1014 40 1 9.6449 -4.0894 0.7854 41 1 13.7728 -5.8803 0.4362 42 1 5.6192 -2.4941 1.5204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175130950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:26 Heat of formation + Delta-G solvation = -53.984320 kcal Electronic energy + Delta-G solvation = -25969.650899 eV Core-core repulsion = 21975.276248 eV Total energy + Delta-G solvation = -3994.374651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54714 -39.26177 -38.41496 -36.49440 -36.20071 -35.39852 -34.06693 -32.21494 -31.81567 -30.75661 -29.87942 -27.62711 -27.00815 -24.64921 -24.13006 -21.98021 -21.70847 -20.64272 -19.57473 -18.69193 -18.31267 -16.90628 -16.63478 -16.41668 -15.74586 -15.34836 -15.24379 -15.03798 -14.89937 -14.45917 -14.23170 -14.02045 -13.95572 -13.70503 -13.27734 -13.18371 -12.74064 -12.65496 -12.56020 -12.47373 -12.46113 -12.14297 -11.80747 -11.69928 -11.50410 -11.34314 -11.25507 -10.90260 -10.65337 -10.28190 -10.15274 -10.07016 -9.70727 -9.44832 -8.98219 -8.79313 -8.31983 -7.50472 -6.41523 -3.94272 0.58036 1.29494 2.10562 2.65600 2.80569 2.98669 3.03374 3.11700 3.34971 3.52934 3.66575 4.02676 4.34551 4.48939 4.51872 4.59324 4.65782 4.81484 4.87190 5.10695 5.12042 5.16003 5.21677 5.27824 5.37472 5.48747 5.51828 5.54765 5.67531 5.68316 5.71816 5.86523 5.88494 5.96305 6.08151 6.17388 6.44252 7.10154 7.20525 7.44901 7.77504 7.96390 8.01109 8.43769 8.80801 9.28330 9.61731 10.70605 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.002895 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.364618 B = 9668.179824 C =12306.882941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.165 4.165 4 N -0.724 5.724 5 C 0.561 3.439 6 O -0.531 6.531 7 C -0.084 4.084 8 C -0.148 4.148 9 C -0.065 4.065 10 C -0.097 4.097 11 Cl -0.062 7.062 12 C 0.234 3.766 13 N -0.714 5.714 14 C 0.104 3.896 15 C 0.438 3.562 16 O -0.575 6.575 17 N -0.576 5.576 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.873 5.873 22 Si 0.879 3.121 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.267 1.267 26 C -0.134 4.134 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.400 0.600 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.418 0.582 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.374 0.626 41 H 0.276 0.724 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.377 12.736 0.415 30.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.377 5.377 5 C 0.349 3.651 6 O -0.408 6.408 7 C -0.088 4.088 8 C -0.170 4.170 9 C -0.084 4.084 10 C -0.130 4.130 11 Cl -0.034 7.034 12 C 0.125 3.875 13 N -0.344 5.344 14 C -0.024 4.024 15 C 0.224 3.776 16 O -0.458 6.458 17 N -0.214 5.214 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.512 5.512 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.192 1.192 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.259 0.741 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.207 0.793 41 H 0.086 0.914 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.276 12.277 0.271 29.004 hybrid contribution -0.131 0.297 -0.562 0.649 sum -26.407 12.574 -0.291 29.249 Atomic orbital electron populations 1.22083 0.94041 1.02737 1.02988 1.20963 0.93974 0.93126 0.88812 1.22197 1.02394 0.95644 1.02071 1.46022 1.17790 1.56923 1.16945 1.18294 0.81253 0.78070 0.87509 1.90789 1.56109 1.59466 1.34447 1.19634 0.95138 1.00147 0.93835 1.20808 0.99938 1.03655 0.92551 1.20667 0.93224 0.95864 0.98694 1.20566 0.96646 1.06833 0.88929 1.98374 1.88878 1.77909 1.38202 1.17445 0.85816 0.92138 0.92125 1.44700 1.13141 1.59324 1.17256 1.21099 0.91577 1.01320 0.88417 1.19528 0.85518 0.86454 0.86097 1.90560 1.79716 1.50986 1.24585 1.42119 1.15905 1.50304 1.13032 1.19438 0.89936 1.31566 1.02913 0.86087 1.25068 0.95278 0.97107 0.98450 1.69618 1.06093 1.40940 1.34584 0.86671 0.78753 0.80242 0.83828 1.19365 1.19948 1.19222 1.20704 0.96425 1.00932 0.97757 0.92019 0.90842 0.91863 0.89250 0.91879 0.91592 0.92450 0.76455 0.85496 0.84566 0.74052 0.89964 0.89964 0.79264 0.91363 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.38 37.16 0.35 -0.34 16 2 C 0.14 0.95 3.18 -67.93 -0.22 0.74 16 3 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 4 N -0.72 -5.60 5.03 -54.76 -0.28 -5.88 16 5 C 0.56 6.45 7.74 -12.35 -0.10 6.36 16 6 O -0.53 -8.05 16.00 5.32 0.09 -7.97 16 7 C -0.08 -0.94 5.87 -104.99 -0.62 -1.56 16 8 C -0.15 -1.28 9.53 -39.17 -0.37 -1.65 16 9 C -0.07 -0.62 9.80 -39.64 -0.39 -1.01 16 10 C -0.10 -1.22 6.34 -39.21 -0.25 -1.46 16 11 Cl -0.06 -0.80 27.57 -51.86 -1.43 -2.23 16 12 C 0.23 3.27 6.65 -83.78 -0.56 2.72 16 13 N -0.71 -11.59 5.66 -59.81 -0.34 -11.93 16 14 C 0.10 1.73 5.39 -5.19 -0.03 1.70 16 15 C 0.44 9.72 7.85 -10.98 -0.09 9.63 16 16 O -0.57 -14.94 15.24 5.55 0.08 -14.85 16 17 N -0.58 -13.42 5.09 -10.96 -0.06 -13.47 16 18 C -0.31 -8.60 10.16 -14.93 -0.15 -8.76 16 19 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 20 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 21 N -0.87 -25.08 13.96 55.50 0.77 -24.31 16 22 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 26 C -0.13 -1.77 8.85 -38.98 -0.35 -2.12 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.80 7.58 -51.93 -0.39 0.40 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.40 2.00 6.63 -40.82 -0.27 1.73 16 35 H 0.13 0.64 6.39 -52.49 -0.34 0.31 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.42 7.47 6.10 -40.82 -0.25 7.22 16 38 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 39 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 40 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 41 H 0.28 7.29 8.31 -40.82 -0.34 6.96 16 42 H 0.14 1.97 6.32 -52.49 -0.33 1.64 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -33.24 370.03 -7.95 -41.19 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.16 Total: 14.92 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -2.50 Total: 4.59 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.10 Total: -55.59 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.17 Total: -22.82 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.43 Total: -2.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.24 -7.95 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175130950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.790 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds