Wall clock time and date at job start Tue Mar 31 2020 23:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47381 * 2 1 4 4 N 1.46497 * 109.46616 * 119.99995 * 2 1 3 5 5 C 1.34780 * 120.00046 * 155.00124 * 4 2 1 6 6 O 1.21554 * 119.99921 * 359.97438 * 5 4 2 7 7 C 1.47805 * 119.99950 * 179.97438 * 5 4 2 8 8 C 1.39634 * 120.10112 * 0.24961 * 7 5 4 9 9 C 1.37944 * 120.01294 * 180.30106 * 8 7 5 10 10 C 1.38372 * 120.21084 * 359.44416 * 9 8 7 11 11 Cl 1.73598 * 119.89907 * 180.25964 * 10 9 8 12 12 C 1.39107 * 120.20147 * 0.28162 * 10 9 8 13 13 N 1.39784 * 120.01088 * 180.02562 * 12 10 9 14 14 C 1.46497 * 120.00328 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47433 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99775 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00203 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99957 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00072 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00024 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99969 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 119.99791 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47432 * 89.99844 * 22 20 18 24 24 H 1.48508 * 109.47089 * 209.99705 * 22 20 18 25 25 H 1.48501 * 109.47198 * 329.99467 * 22 20 18 26 26 C 1.38591 * 119.98464 * 359.97438 * 12 10 9 27 27 H 1.08996 * 109.47044 * 300.00359 * 1 2 3 28 28 H 1.09001 * 109.46576 * 60.00340 * 1 2 3 29 29 H 1.08996 * 109.47440 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47044 * 239.99641 * 2 1 3 31 31 H 1.09004 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46988 * 299.99408 * 3 2 1 33 33 H 1.08996 * 109.47325 * 59.99813 * 3 2 1 34 34 H 0.97001 * 120.00116 * 334.99866 * 4 2 1 35 35 H 1.08001 * 119.99488 * 0.02562 * 8 7 5 36 36 H 1.08002 * 119.89743 * 179.72847 * 9 8 7 37 37 H 0.97006 * 120.00105 * 359.97438 * 13 12 10 38 38 H 1.09006 * 109.47046 * 299.99882 * 14 13 12 39 39 H 1.09005 * 109.47470 * 59.99676 * 14 13 12 40 40 H 0.97001 * 119.99864 * 359.97438 * 17 15 14 41 41 H 0.97000 * 120.00074 * 179.97438 * 21 20 18 42 42 H 1.07998 * 120.10949 * 179.97438 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2402 -1.2592 1.1945 6 8 3.9370 -1.1994 0.2003 7 6 3.7330 -1.9555 2.4016 8 6 2.9322 -2.0300 3.5430 9 6 3.3964 -2.6749 4.6706 10 6 4.6505 -3.2596 4.6717 11 17 5.2239 -4.0750 6.0930 12 6 5.4534 -3.1957 3.5376 13 7 6.7194 -3.7882 3.5429 14 6 7.5646 -3.7213 2.3482 15 6 8.8673 -4.4308 2.6140 16 8 9.0700 -4.9416 3.6952 17 7 9.8072 -4.4976 1.6503 18 6 10.9920 -5.1435 1.8919 19 1 11.1722 -5.5991 2.8544 20 6 11.9608 -5.2128 0.8982 21 7 13.0967 -5.8315 1.1300 22 14 11.6489 -4.4255 -0.7667 23 1 12.1254 -3.0192 -0.7464 24 1 12.3796 -5.1806 -1.8161 25 1 10.1936 -4.4508 -1.0614 26 6 4.9974 -2.5453 2.4019 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1302 1.4424 0.0005 32 1 1.6769 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.4621 -0.7387 1.9895 35 1 1.9510 -1.5787 3.5446 36 1 2.7772 -2.7276 5.5540 37 1 7.0384 -4.2438 4.3377 38 1 7.0529 -4.2010 1.5138 39 1 7.7631 -2.6783 2.1014 40 1 9.6449 -4.0894 0.7854 41 1 13.7728 -5.8803 0.4362 42 1 5.6192 -2.4941 1.5204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175130950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:25 Heat of formation + Delta-G solvation = -78.775592 kcal Electronic energy + Delta-G solvation = -25970.725930 eV Core-core repulsion = 21975.276248 eV Total energy + Delta-G solvation = -3995.449682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43587 -40.61739 -39.75773 -37.42023 -36.95315 -36.66112 -35.93284 -33.87626 -32.98271 -31.58249 -30.98543 -28.40831 -28.05357 -26.20793 -25.18330 -22.99981 -22.39444 -21.44610 -21.40859 -20.43342 -19.38382 -18.05529 -17.56652 -17.49420 -17.06281 -16.56398 -16.51913 -16.40990 -16.07099 -15.47312 -15.11601 -15.06479 -14.90128 -14.85742 -14.80727 -14.32548 -13.99844 -13.91913 -13.78659 -13.34532 -13.12958 -13.01866 -13.01792 -12.64451 -12.48021 -12.46672 -12.25706 -12.02621 -11.89576 -11.82309 -11.61827 -11.29474 -11.05375 -10.69084 -10.35631 -10.19133 -9.84426 -8.56292 -8.48350 -6.10716 -0.31896 0.43495 1.15735 1.28553 1.31629 1.41549 1.74829 1.78573 2.02182 2.17611 2.21705 2.78870 2.86300 3.07517 3.66795 3.71274 3.91468 3.98413 4.13604 4.18215 4.19521 4.27096 4.34947 4.36004 4.37441 4.76096 4.76771 4.79883 4.90705 4.98551 5.07315 5.15613 5.23872 5.31454 5.37370 5.43072 5.52184 5.62272 5.82566 6.03207 6.46655 6.53047 6.55627 6.75346 7.20614 7.25478 7.75796 8.68324 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.002895 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.364618 B = 9668.179824 C =12306.882941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.704 5.704 5 C 0.558 3.442 6 O -0.576 6.576 7 C -0.090 4.090 8 C -0.121 4.121 9 C -0.059 4.059 10 C -0.105 4.105 11 Cl -0.073 7.073 12 C 0.212 3.788 13 N -0.732 5.732 14 C 0.120 3.880 15 C 0.442 3.558 16 O -0.617 6.617 17 N -0.577 5.577 18 C -0.333 4.333 19 H 0.060 0.940 20 C -0.008 4.008 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.232 1.232 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.416 0.584 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.408 0.592 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.392 0.608 41 H 0.282 0.718 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.766 15.199 -0.818 35.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.358 5.358 5 C 0.346 3.654 6 O -0.457 6.457 7 C -0.094 4.094 8 C -0.142 4.142 9 C -0.078 4.078 10 C -0.137 4.137 11 Cl -0.044 7.044 12 C 0.106 3.894 13 N -0.364 5.364 14 C -0.008 4.008 15 C 0.230 3.770 16 O -0.503 6.503 17 N -0.217 5.217 18 C -0.462 4.462 19 H 0.078 0.922 20 C -0.208 4.208 21 N -0.565 5.565 22 Si 0.780 3.220 23 H -0.180 1.180 24 H -0.197 1.197 25 H -0.156 1.156 26 C -0.171 4.171 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.255 0.745 35 H 0.190 0.810 36 H 0.186 0.814 37 H 0.247 0.753 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.228 0.772 41 H 0.091 0.909 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -30.764 14.777 -0.942 34.142 hybrid contribution 1.080 -0.444 -0.029 1.168 sum -29.684 14.333 -0.971 32.978 Atomic orbital electron populations 1.22037 0.91294 1.03324 1.04368 1.21077 0.95985 0.92688 0.87558 1.22169 1.00440 0.95858 1.03506 1.45932 1.16568 1.55393 1.17868 1.18395 0.81953 0.78093 0.86937 1.90770 1.57580 1.61348 1.35963 1.19756 0.94851 1.00068 0.94763 1.21274 1.00930 1.01292 0.90664 1.21074 0.92129 0.94469 1.00100 1.20865 0.97594 1.07080 0.88167 1.98374 1.89204 1.78247 1.38606 1.17558 0.85272 0.93322 0.93203 1.44628 1.14272 1.60942 1.16525 1.20998 0.88446 1.01834 0.89511 1.20591 0.86761 0.84805 0.84878 1.90538 1.80952 1.52368 1.26475 1.41922 1.14886 1.50641 1.14271 1.19012 0.92590 1.33242 1.01318 0.92167 1.26090 0.94242 0.97154 1.03340 1.69783 1.07489 1.42626 1.36632 0.85431 0.80721 0.79194 0.76686 1.18006 1.19677 1.15567 1.20697 0.97454 1.01695 0.97205 0.90248 0.89895 0.91664 0.91614 0.94830 0.90269 0.90968 0.74522 0.80970 0.81386 0.75344 0.87665 0.87600 0.77151 0.90867 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.38 71.98 0.68 -0.06 16 2 C 0.13 1.54 3.18 44.99 0.14 1.68 16 3 C -0.16 -1.89 9.48 71.98 0.68 -1.21 16 4 N -0.70 -8.73 5.03 -445.45 -2.24 -10.97 16 5 C 0.56 11.77 7.74 86.77 0.67 12.44 16 6 O -0.58 -17.22 16.00 -3.88 -0.06 -17.29 16 7 C -0.09 -1.81 5.87 -20.10 -0.12 -1.93 16 8 C -0.12 -1.56 9.53 22.54 0.21 -1.35 16 9 C -0.06 -0.91 9.80 22.23 0.22 -0.69 16 10 C -0.11 -2.45 6.34 22.51 0.14 -2.31 16 11 Cl -0.07 -1.84 27.57 -2.72 -0.07 -1.92 16 12 C 0.21 5.77 6.65 38.17 0.25 6.03 16 13 N -0.73 -23.91 5.66 -343.13 -1.94 -25.85 16 14 C 0.12 3.94 5.39 85.63 0.46 4.40 16 15 C 0.44 20.09 7.85 87.66 0.69 20.78 16 16 O -0.62 -33.84 15.24 -3.06 -0.05 -33.89 16 17 N -0.58 -27.29 5.09 -306.98 -1.56 -28.85 16 18 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 19 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 20 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 21 N -0.93 -55.37 13.96 21.66 0.30 -55.07 16 22 Si 0.96 38.88 27.74 68.60 1.90 40.78 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.23 -8.04 6.52 99.48 0.65 -7.40 16 26 C -0.15 -3.70 8.85 22.66 0.20 -3.50 16 27 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 1.11 7.58 -2.39 -0.02 1.10 16 31 H 0.03 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.42 2.18 6.63 -92.71 -0.61 1.56 16 35 H 0.17 0.63 6.39 -2.91 -0.02 0.61 16 36 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.41 15.03 6.10 -92.70 -0.57 14.46 16 38 H 0.11 2.97 7.95 -2.38 -0.02 2.95 16 39 H 0.11 2.98 7.95 -2.38 -0.02 2.96 16 40 H 0.39 15.46 5.76 -92.71 -0.53 14.93 16 41 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.13 3.60 6.32 -2.91 -0.02 3.58 16 Total: -1.00 -80.19 370.03 1.16 -79.03 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.68 Total: 38.25 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.56 Total: 15.77 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.44 Total: -120.74 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.11 Total: -51.18 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.90 Total: 40.78 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.92 kcal Total: -80.19 1.16 -79.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175130950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.257 kcal (2) G-P(sol) polarization free energy of solvation -80.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds