Wall clock time and date at job start Tue Mar 31 2020 22:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86797 * 119.99827 * 2 1 4 4 H 1.48500 * 109.46965 * 239.99907 * 3 2 1 5 5 H 1.48497 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47151 * 119.99950 * 3 2 1 7 7 C 1.38886 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99781 * 159.45892 * 7 2 1 9 9 N 1.37134 * 120.00459 * 339.46070 * 7 2 1 10 10 C 1.34777 * 120.00309 * 160.44777 * 9 7 2 11 11 O 1.21285 * 120.00331 * 184.19284 * 10 9 7 12 12 C 1.50702 * 119.99963 * 4.19453 * 10 9 7 13 13 N 1.46502 * 109.47103 * 180.02562 * 12 10 9 14 14 N 1.40230 * 126.19042 * 270.02397 * 13 12 10 15 15 C 1.30957 * 107.91186 * 180.02562 * 14 13 12 16 16 C 1.41822 * 132.97997 * 180.02562 * 15 14 13 17 17 N 1.30754 * 119.65756 * 179.97438 * 16 15 14 18 18 C 1.33944 * 121.57135 * 359.97438 * 17 16 15 19 19 C 1.34488 * 121.58976 * 0.03019 * 18 17 16 20 20 N 1.37736 * 119.79663 * 359.95304 * 19 18 17 21 21 C 1.34502 * 133.00290 * 180.38425 * 20 19 18 22 22 O 1.21890 * 126.07809 * 359.95267 * 21 20 19 23 23 C 1.39793 * 119.99955 * 340.44740 * 9 7 2 24 24 C 1.38960 * 120.07434 * 288.66275 * 23 9 7 25 25 C 1.38084 * 119.91984 * 180.29869 * 24 23 9 26 26 C 1.38308 * 120.07753 * 359.97438 * 25 24 23 27 27 C 1.38308 * 120.15549 * 359.97438 * 26 25 24 28 28 C 1.38077 * 120.07868 * 0.03040 * 27 26 25 29 29 H 0.96998 * 120.00649 * 5.09267 * 1 2 3 30 30 H 1.08995 * 109.47183 * 299.99914 * 12 10 9 31 31 H 1.09004 * 109.46972 * 59.99881 * 12 10 9 32 32 H 1.07998 * 120.16802 * 359.97438 * 16 15 14 33 33 H 1.07992 * 119.19981 * 180.02562 * 18 17 16 34 34 H 1.08008 * 120.09430 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.04306 * 0.24753 * 24 23 9 36 36 H 1.08006 * 119.96128 * 179.97438 * 25 24 23 37 37 H 1.08000 * 119.92098 * 179.97438 * 26 25 24 38 38 H 1.08000 * 119.96042 * 179.97438 * 27 26 25 39 39 H 1.08004 * 120.03739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0372 -1.2327 -0.3277 9 7 1.3884 -2.3525 0.4177 10 6 1.8872 -3.5537 0.0643 11 8 1.2972 -4.5687 0.3685 12 6 3.1781 -3.6356 -0.7090 13 7 3.5032 -5.0402 -0.9692 14 7 4.2655 -5.8801 -0.1447 15 6 4.3320 -7.0554 -0.7184 16 6 4.9564 -8.2754 -0.3537 17 7 4.8534 -9.3152 -1.1398 18 6 4.1684 -9.2601 -2.2895 19 6 3.5545 -8.1327 -2.6904 20 7 3.6233 -7.0008 -1.9086 21 6 3.1181 -5.7614 -2.0423 22 8 2.4367 -5.3603 -2.9700 23 6 0.2388 -2.2787 1.2096 24 6 0.3303 -1.8656 2.5332 25 6 -0.8065 -1.7998 3.3144 26 6 -2.0351 -2.1438 2.7806 27 6 -2.1300 -2.5544 1.4633 28 6 -0.9975 -2.6227 0.6765 29 1 -0.4851 0.8367 -0.0746 30 1 3.0685 -3.1070 -1.6559 31 1 3.9792 -3.1783 -0.1282 32 1 5.5140 -8.3452 0.5686 33 1 4.1078 -10.1423 -2.9094 34 1 3.0089 -8.1152 -3.6223 35 1 1.2895 -1.5972 2.9508 36 1 -0.7360 -1.4792 4.3433 37 1 -2.9225 -2.0918 3.3940 38 1 -3.0910 -2.8228 1.0499 39 1 -1.0723 -2.9438 -0.3520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181690878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:56 Heat of formation + Delta-G solvation = 93.932074 kcal Electronic energy + Delta-G solvation = -28770.213060 eV Core-core repulsion = 24681.145051 eV Total energy + Delta-G solvation = -4089.068009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.36482 -41.33215 -40.26558 -39.06529 -38.51393 -36.72265 -35.86179 -33.90986 -33.67911 -31.64296 -31.26364 -30.59222 -29.41220 -26.98153 -26.14221 -24.72192 -23.85939 -23.29190 -22.91774 -21.25512 -20.07261 -19.85656 -19.10019 -18.77698 -17.79469 -17.61668 -17.32630 -16.91010 -16.62648 -16.55366 -16.33652 -16.08388 -15.73111 -15.26096 -15.15838 -14.97477 -14.60366 -14.22246 -14.17030 -13.61572 -13.45554 -13.34557 -13.28107 -13.22551 -12.85125 -12.81930 -12.75294 -12.27824 -12.13112 -12.03717 -11.92242 -11.32710 -11.17919 -11.12530 -10.41559 -10.15731 -9.63851 -9.29273 -9.04797 -8.24478 -6.04241 -0.79740 0.18650 0.28183 0.67843 0.73247 1.18863 1.37664 1.48143 1.56552 1.61308 1.77406 2.24046 2.33633 2.69199 2.81015 2.99310 3.15864 3.20070 3.24244 3.82297 3.97426 4.03670 4.10378 4.15581 4.17739 4.22527 4.34263 4.53575 4.60473 4.68629 4.71022 4.83362 4.97554 5.02465 5.27327 5.31886 5.37343 5.58411 5.71171 5.76141 5.93442 6.05564 6.16859 6.44737 6.50783 6.57377 6.98747 7.34637 7.77214 8.66011 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.003505 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.975187 B = 7986.257127 C = 8933.843748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.013 3.987 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.388 4.388 8 H 0.123 0.877 9 N -0.407 5.407 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.166 3.834 13 N -0.409 5.409 14 N -0.257 5.257 15 C 0.225 3.775 16 C 0.193 3.807 17 N -0.426 5.426 18 C 0.005 3.995 19 C 0.065 3.935 20 N -0.478 5.478 21 C 0.637 3.363 22 O -0.574 6.574 23 C 0.203 3.797 24 C -0.145 4.145 25 C -0.117 4.117 26 C -0.139 4.139 27 C -0.123 4.123 28 C -0.103 4.103 29 H 0.273 0.727 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.235 0.765 33 H 0.224 0.776 34 H 0.194 0.806 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.266 -10.613 0.544 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.194 4.194 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.513 4.513 8 H 0.140 0.860 9 N -0.122 5.122 10 C 0.224 3.776 11 O -0.511 6.511 12 C 0.042 3.958 13 N -0.227 5.227 14 N -0.086 5.086 15 C -0.044 4.044 16 C 0.000 4.000 17 N -0.136 5.136 18 C -0.129 4.129 19 C -0.054 4.054 20 N -0.194 5.194 21 C 0.337 3.663 22 O -0.449 6.449 23 C 0.112 3.888 24 C -0.165 4.165 25 C -0.135 4.135 26 C -0.157 4.157 27 C -0.142 4.142 28 C -0.123 4.123 29 H 0.083 0.917 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.251 0.749 33 H 0.240 0.760 34 H 0.211 0.789 35 H 0.129 0.871 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.150 0.850 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.810 -10.722 0.843 13.292 hybrid contribution -0.802 1.678 -1.369 2.310 sum 7.008 -9.044 -0.526 11.453 Atomic orbital electron populations 1.70091 1.07608 1.28903 1.43305 1.26138 0.95920 1.02807 0.94539 0.85080 0.77940 0.76291 0.79682 1.18516 1.21305 1.18746 1.20009 0.98370 0.84341 1.48593 0.85995 1.41476 1.23068 1.05485 1.42213 1.20903 0.89496 0.83240 0.83986 1.90560 1.63673 1.36006 1.60812 1.21274 0.96729 0.74451 1.03306 1.48624 1.45557 1.11435 1.17048 1.77534 1.16194 0.98758 1.16142 1.23528 0.97432 0.97950 0.85498 1.23736 0.94890 0.80554 1.00800 1.68217 1.13726 1.27600 1.04050 1.22681 0.97381 0.97654 0.95176 1.23241 1.01069 0.83245 0.97855 1.43688 1.43354 1.11405 1.20983 1.16572 0.83054 0.81436 0.85272 1.91084 1.43334 1.74224 1.36257 1.17466 0.86360 0.95075 0.89860 1.21163 0.99456 1.02770 0.93082 1.21172 0.91927 1.00211 1.00204 1.21256 0.98289 1.01050 0.95085 1.21090 0.97344 1.00715 0.95015 1.20803 0.93210 1.00588 0.97665 0.91740 0.85606 0.83342 0.74888 0.76010 0.78922 0.87099 0.83484 0.83131 0.84962 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.03 11.00 21.65 0.24 -44.79 16 2 C 0.01 0.63 5.09 84.91 0.43 1.06 16 3 Si 0.99 37.93 29.60 68.60 2.03 39.96 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 5 H -0.29 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.39 -18.88 9.00 84.02 0.76 -18.13 16 8 H 0.12 5.24 6.62 -2.91 -0.02 5.22 16 9 N -0.41 -20.94 2.67 -458.89 -1.23 -22.16 16 10 C 0.43 21.95 7.60 87.66 0.67 22.62 16 11 O -0.62 -35.55 16.14 -3.05 -0.05 -35.60 16 12 C 0.17 6.77 5.28 85.63 0.45 7.22 16 13 N -0.41 -16.42 3.11 -482.00 -1.50 -17.92 16 14 N -0.26 -8.86 12.61 -54.63 -0.69 -9.55 16 15 C 0.23 6.33 7.92 134.29 1.06 7.40 16 16 C 0.19 3.49 11.37 85.74 0.97 4.47 16 17 N -0.43 -7.31 10.41 -195.01 -2.03 -9.34 16 18 C 0.01 0.07 11.04 83.51 0.92 1.00 16 19 C 0.07 1.38 11.01 82.91 0.91 2.29 16 20 N -0.48 -14.86 2.95 -482.36 -1.42 -16.28 16 21 C 0.64 25.96 8.73 179.10 1.56 27.52 16 22 O -0.57 -26.99 17.88 -4.96 -0.09 -27.08 16 23 C 0.20 10.37 2.55 38.22 0.10 10.47 16 24 C -0.15 -6.62 9.80 22.41 0.22 -6.40 16 25 C -0.12 -4.42 10.04 22.25 0.22 -4.20 16 26 C -0.14 -5.03 10.04 22.30 0.22 -4.81 16 27 C -0.12 -5.12 10.04 22.25 0.22 -4.90 16 28 C -0.10 -5.22 8.68 22.40 0.19 -5.02 16 29 H 0.27 13.61 8.32 -92.71 -0.77 12.84 16 30 H 0.13 5.05 7.97 -2.39 -0.02 5.03 16 31 H 0.15 5.09 7.83 -2.38 -0.02 5.07 16 32 H 0.23 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.22 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.19 3.23 8.06 -2.91 -0.02 3.20 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 37 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 39 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -78.96 351.08 5.30 -73.66 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 1.11 Total: 28.53 kcal Atomic # 6 Polarization: 31.65 SS G_CDS: 8.93 Total: 40.58 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -6.63 Total: -120.05 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -0.14 Total: -62.68 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -78.96 5.30 -73.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181690878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.593 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds