Wall clock time and date at job start Tue Mar 31 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48504 * 109.46621 * 269.99478 * 3 2 1 5 5 H 1.48492 * 109.47074 * 29.99274 * 3 2 1 6 6 H 1.48494 * 109.47125 * 150.00177 * 3 2 1 7 7 C 1.37876 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00254 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99789 * 180.02562 * 7 2 1 10 10 O 1.42898 * 113.28199 * 313.06263 * 9 7 2 11 11 C 1.53503 * 114.20647 * 179.97438 * 9 7 2 12 12 N 1.47068 * 87.98749 * 220.14629 * 11 9 7 13 13 C 1.34773 * 136.05956 * 207.08772 * 12 11 9 14 14 O 1.21723 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.46252 * 120.00202 * 179.72194 * 13 12 11 16 16 C 1.34975 * 120.00048 * 180.27383 * 15 13 12 17 17 C 1.47010 * 119.99952 * 180.02562 * 16 15 13 18 18 C 1.39970 * 120.11171 * 359.72056 * 17 16 15 19 19 C 1.37664 * 119.88584 * 179.76398 * 18 17 16 20 20 C 1.39026 * 120.10955 * 0.51899 * 19 18 17 21 21 O 1.35732 * 119.88446 * 179.76149 * 20 19 18 22 22 C 1.42902 * 117.00204 * 359.97438 * 21 20 19 23 23 F 1.39908 * 109.46867 * 300.00098 * 22 21 20 24 24 F 1.39904 * 109.47211 * 59.99820 * 22 21 20 25 25 C 1.39019 * 120.22797 * 359.73069 * 20 19 18 26 26 C 1.37666 * 120.11552 * 0.02562 * 25 20 19 27 27 C 1.47071 * 87.88415 * 27.33888 * 12 11 9 28 28 H 0.97009 * 119.99903 * 0.02562 * 1 2 3 29 29 H 0.96704 * 114.00229 * 46.94055 * 10 9 7 30 30 H 1.08998 * 113.46444 * 105.36162 * 11 9 7 31 31 H 1.09003 * 113.51694 * 334.93724 * 11 9 7 32 32 H 1.08001 * 120.00140 * 0.27785 * 15 13 12 33 33 H 1.07992 * 120.00345 * 359.97438 * 16 15 13 34 34 H 1.08002 * 120.05653 * 0.02615 * 18 17 16 35 35 H 1.07997 * 119.94738 * 180.25193 * 19 18 17 36 36 H 1.08996 * 109.47441 * 180.02562 * 22 21 20 37 37 H 1.08003 * 119.94152 * 179.97438 * 25 20 19 38 38 H 1.07996 * 120.05625 * 180.02562 * 26 25 20 39 39 H 1.08998 * 113.46338 * 87.43811 * 27 12 11 40 40 H 1.08993 * 113.47050 * 217.87717 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 4.0766 -0.2980 -0.9579 11 6 4.1409 -2.5941 0.0023 12 7 5.1440 -2.0857 0.9500 13 6 6.4181 -2.3877 1.2693 14 8 6.9911 -3.2945 0.6941 15 6 7.1140 -1.6221 2.3031 16 6 8.3918 -1.9210 2.6190 17 6 9.0911 -1.1518 3.6585 18 6 8.4360 -0.1054 4.3180 19 6 9.0937 0.6087 5.2941 20 6 10.4098 0.2989 5.6175 21 8 11.0555 1.0091 6.5773 22 6 10.3221 2.0589 7.2114 23 9 9.9266 2.9970 6.2516 24 9 9.1898 1.5254 7.8363 25 6 11.0666 -0.7361 4.9618 26 6 10.4162 -1.4595 3.9877 27 6 4.1429 -1.1070 1.4003 28 1 -0.4850 0.8401 -0.0004 29 1 3.6781 0.5830 -0.9557 30 1 4.5608 -2.8820 -0.9615 31 1 3.4932 -3.3618 0.4260 32 1 6.6055 -0.8177 2.8137 33 1 8.9002 -2.7256 2.1087 34 1 7.4149 0.1387 4.0645 35 1 8.5878 1.4136 5.8064 36 1 10.9531 2.5449 7.9554 37 1 12.0892 -0.9725 5.2165 38 1 10.9273 -2.2636 3.4792 39 1 3.4953 -1.4819 2.1928 40 1 4.5646 -0.1280 1.6277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186844656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:32 Heat of formation + Delta-G solvation = -148.426414 kcal Electronic energy + Delta-G solvation = -28174.277164 eV Core-core repulsion = 23591.717764 eV Total energy + Delta-G solvation = -4582.559399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.34563 -48.34572 -41.52661 -41.06806 -39.50498 -38.69143 -36.37240 -34.72030 -34.56682 -32.23209 -31.27685 -30.03899 -27.76013 -26.96830 -26.90023 -24.79655 -23.88366 -22.48671 -21.27263 -20.14605 -19.91181 -19.45880 -19.09239 -18.91195 -18.32341 -18.19977 -17.19801 -16.89056 -16.62143 -16.49108 -15.83630 -15.72267 -15.60216 -15.35040 -15.10498 -15.00178 -14.89401 -14.68002 -14.54737 -14.46212 -14.17232 -14.00219 -13.86487 -13.76282 -13.41695 -13.10101 -12.94028 -12.71498 -12.60072 -12.41590 -11.94208 -11.91177 -11.51106 -11.14149 -11.10736 -10.92073 -10.50673 -10.17622 -9.74086 -9.05269 -8.44371 -6.56399 -0.58422 0.24151 0.84281 1.24111 1.27175 1.39162 1.55003 1.87928 2.15608 2.19237 2.54605 2.72690 2.74285 3.17537 3.41866 3.44136 3.65692 3.66184 3.72115 3.77931 3.97508 4.06633 4.14857 4.23148 4.35224 4.43197 4.46536 4.59498 4.66632 4.74341 4.86645 4.89991 4.91086 5.04632 5.10254 5.24496 5.38609 5.42170 5.54385 5.93436 6.01129 6.51714 6.64141 6.75751 7.06310 7.12214 8.70946 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.002586 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.085147 B =10825.348458 C =12420.730874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.029 3.971 3 Si 0.917 3.083 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.233 1.233 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.183 3.817 10 O -0.558 6.558 11 C 0.118 3.882 12 N -0.635 5.635 13 C 0.564 3.436 14 O -0.599 6.599 15 C -0.217 4.217 16 C -0.002 4.002 17 C -0.112 4.112 18 C -0.070 4.070 19 C -0.205 4.205 20 C 0.108 3.892 21 O -0.322 6.322 22 C 0.404 3.596 23 F -0.211 7.211 24 F -0.210 7.210 25 C -0.139 4.139 26 C -0.054 4.054 27 C 0.074 3.926 28 H 0.274 0.726 29 H 0.355 0.645 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.238 0.762 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.108 0.892 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.930 6.160 17.595 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.172 4.172 3 Si 0.742 3.258 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.157 1.157 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.142 3.858 10 O -0.370 6.370 11 C -0.004 4.004 12 N -0.366 5.366 13 C 0.359 3.641 14 O -0.483 6.483 15 C -0.238 4.238 16 C -0.022 4.022 17 C -0.112 4.112 18 C -0.088 4.088 19 C -0.224 4.224 20 C 0.064 3.936 21 O -0.239 6.239 22 C 0.315 3.685 23 F -0.193 7.193 24 F -0.192 7.192 25 C -0.157 4.157 26 C -0.072 4.072 27 C -0.049 4.049 28 H 0.084 0.916 29 H 0.209 0.791 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.253 0.747 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.125 0.875 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 24.755 5.238 17.291 30.647 hybrid contribution -1.285 1.217 -0.222 1.783 sum 23.470 6.454 17.069 29.730 Atomic orbital electron populations 1.69984 1.07904 1.28868 1.49113 1.25798 0.95638 1.02775 0.93035 0.86348 0.79930 0.79522 0.79997 1.18300 1.20624 1.15726 1.21233 0.89017 0.94782 1.52695 0.92129 1.20324 0.90854 0.88535 0.86055 1.86473 1.64304 1.25336 1.60904 1.23143 0.87259 0.97051 0.92974 1.49583 1.10227 1.37002 1.39827 1.18328 0.79706 0.83092 0.83004 1.90734 1.66809 1.34247 1.56522 1.22768 0.96987 1.03422 1.00587 1.22347 0.92739 0.95347 0.91750 1.19042 0.95457 0.98056 0.98627 1.21407 1.00317 0.93375 0.93685 1.21570 0.94578 1.03931 1.02298 1.19324 0.91400 0.93093 0.89761 1.86590 1.41775 1.45571 1.50014 1.24343 0.81564 0.78043 0.84572 1.93091 1.92139 1.66261 1.67786 1.93089 1.56543 1.87031 1.82562 1.20683 1.02169 0.95178 0.97700 1.21523 0.92359 0.98385 0.94892 1.24343 0.87540 0.92562 1.00430 0.91602 0.79143 0.91736 0.87693 0.84116 0.84487 0.84457 0.84535 0.74687 0.81923 0.81837 0.87452 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.15 13.96 21.45 0.30 -51.85 16 2 C 0.03 1.51 5.47 84.65 0.46 1.98 16 3 Si 0.92 37.89 24.42 68.60 1.68 39.57 16 4 H -0.26 -10.25 7.06 99.48 0.70 -9.55 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.23 -8.65 5.50 99.48 0.55 -8.11 16 7 C -0.54 -28.03 9.28 25.60 0.24 -27.79 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 9 C 0.18 8.25 1.10 -11.11 -0.01 8.24 16 10 O -0.56 -25.78 13.33 -148.98 -1.99 -27.77 16 11 C 0.12 5.00 8.02 83.18 0.67 5.67 16 12 N -0.63 -25.30 3.69 -863.40 -3.18 -28.49 16 13 C 0.56 21.87 7.99 86.33 0.69 22.55 16 14 O -0.60 -26.62 17.01 -4.42 -0.08 -26.70 16 15 C -0.22 -6.43 9.24 23.60 0.22 -6.22 16 16 C 0.00 -0.05 9.45 23.82 0.23 0.18 16 17 C -0.11 -2.33 5.87 -20.14 -0.12 -2.45 16 18 C -0.07 -1.47 9.40 22.55 0.21 -1.26 16 19 C -0.21 -4.07 8.23 22.32 0.18 -3.88 16 20 C 0.11 1.91 6.49 22.65 0.15 2.05 16 21 O -0.32 -4.45 10.42 -90.55 -0.94 -5.39 16 22 C 0.40 3.73 5.98 113.37 0.68 4.40 16 23 F -0.21 -3.00 15.57 44.97 0.70 -2.30 16 24 F -0.21 -2.95 15.57 44.97 0.70 -2.25 16 25 C -0.14 -2.09 9.97 22.32 0.22 -1.86 16 26 C -0.05 -0.86 9.79 22.55 0.22 -0.64 16 27 C 0.07 2.84 7.18 83.27 0.60 3.43 16 28 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 29 H 0.36 15.31 3.16 -74.05 -0.23 15.08 16 30 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.11 4.14 8.10 -2.39 -0.02 4.12 16 32 H 0.14 3.63 5.97 -2.91 -0.02 3.61 16 33 H 0.14 3.41 7.52 -2.91 -0.02 3.38 16 34 H 0.14 2.73 6.16 -2.91 -0.02 2.71 16 35 H 0.14 2.61 5.07 -2.91 -0.01 2.59 16 36 H 0.24 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.11 3.85 8.10 -2.39 -0.02 3.83 16 40 H 0.08 2.85 7.15 -2.39 -0.02 2.83 16 Total: -1.00 -70.94 347.07 2.53 -68.41 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.71 Total: 32.36 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 4.63 Total: 4.41 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -2.88 Total: -80.34 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -3.00 Total: -59.85 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 1.40 Total: -4.55 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 1.68 Total: 39.57 kcal Total: -70.94 2.53 -68.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186844656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.015 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds