Wall clock time and date at job start Tue Mar 31 2020 22:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47109 * 270.00260 * 3 2 1 5 5 H 1.48507 * 109.46867 * 30.00262 * 3 2 1 6 6 H 1.48498 * 109.47042 * 150.00093 * 3 2 1 7 7 C 1.38691 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00466 * 359.97438 * 7 2 1 9 9 O 1.34822 * 120.00141 * 180.02562 * 7 2 1 10 10 C 1.35523 * 117.00059 * 185.05507 * 9 7 2 11 11 C 1.38839 * 120.16201 * 354.38711 * 10 9 7 12 12 C 1.38020 * 120.07290 * 180.30194 * 11 10 9 13 13 C 1.38576 * 120.40001 * 359.71964 * 12 11 10 14 14 C 1.37828 * 120.32088 * 0.02562 * 13 12 11 15 15 C 1.39657 * 119.92314 * 359.97438 * 14 13 12 16 16 C 1.47536 * 120.19773 * 180.02562 * 15 14 13 17 17 O 1.21594 * 120.00006 * 180.02562 * 16 15 14 18 18 N 1.34772 * 119.99800 * 0.02562 * 16 15 14 19 19 N 1.40111 * 119.99828 * 179.97438 * 18 16 15 20 20 C 1.39313 * 119.99854 * 180.02562 * 19 18 16 21 21 N 1.32963 * 125.27301 * 359.97438 * 20 19 18 22 22 C 1.32962 * 109.62769 * 179.97438 * 21 20 19 23 23 C 1.40590 * 132.75665 * 180.02562 * 22 21 20 24 24 C 1.36256 * 119.27898 * 179.97438 * 23 22 21 25 25 C 1.40210 * 119.59242 * 0.02562 * 24 23 22 26 26 C 1.35254 * 120.19780 * 359.97438 * 25 24 23 27 27 N 1.35840 * 120.58580 * 359.97438 * 26 25 24 28 28 N 1.31797 * 125.26971 * 179.97438 * 20 19 18 29 29 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.96434 * 0.02657 * 11 10 9 31 31 H 1.08000 * 119.79975 * 179.74754 * 12 11 10 32 32 H 1.07997 * 119.83870 * 180.02562 * 13 12 11 33 33 H 1.08007 * 120.03182 * 180.02562 * 14 13 12 34 34 H 0.96994 * 120.00441 * 0.02562 * 18 16 15 35 35 H 0.96994 * 119.99731 * 0.02562 * 19 18 16 36 36 H 1.08005 * 120.36518 * 0.02562 * 23 22 21 37 37 H 1.07998 * 120.20279 * 180.29300 * 24 23 22 38 38 H 1.08005 * 119.90344 * 179.97438 * 25 24 23 39 39 H 1.07997 * 119.71028 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0087 -1.2011 -0.0005 8 1 1.4688 -2.1364 -0.0005 9 8 3.3569 -1.2011 0.0000 10 6 3.9722 -2.4038 -0.1070 11 6 3.2245 -3.5736 -0.0937 12 6 3.8536 -4.7978 -0.1965 13 6 5.2320 -4.8697 -0.3193 14 6 5.9898 -3.7186 -0.3396 15 6 5.3672 -2.4728 -0.2365 16 6 6.1724 -1.2367 -0.2582 17 8 5.6266 -0.1539 -0.1677 18 7 7.5129 -1.3078 -0.3782 19 7 8.2775 -0.1339 -0.3993 20 6 9.6631 -0.2074 -0.5239 21 7 10.3661 -1.3311 -0.6293 22 6 11.6595 -1.0407 -0.7322 23 6 12.8093 -1.8389 -0.8650 24 6 14.0301 -1.2399 -0.9500 25 6 14.1200 0.1585 -0.9034 26 6 13.0016 0.9082 -0.7753 27 7 11.7805 0.3191 -0.6909 28 7 10.4803 0.8262 -0.5556 29 1 -0.4850 0.8401 0.0004 30 1 2.1498 -3.5257 0.0017 31 1 3.2680 -5.7051 -0.1815 32 1 5.7148 -5.8324 -0.3995 33 1 7.0638 -3.7801 -0.4359 34 1 7.9482 -2.1715 -0.4507 35 1 7.8421 0.7298 -0.3271 36 1 12.7257 -2.9151 -0.9000 37 1 14.9227 -1.8384 -1.0570 38 1 15.0852 0.6386 -0.9699 39 1 13.0799 1.9848 -0.7406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191897857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:56 Heat of formation + Delta-G solvation = 123.960485 kcal Electronic energy + Delta-G solvation = -27426.556808 eV Core-core repulsion = 23338.790928 eV Total energy + Delta-G solvation = -4087.765879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.65213 -41.54137 -40.21839 -38.99637 -38.21828 -36.84170 -34.54292 -34.49002 -33.48331 -31.95109 -30.84002 -30.77636 -30.06514 -27.30375 -25.14093 -24.50348 -24.40186 -23.19537 -22.69096 -22.04436 -19.94079 -19.84263 -19.23622 -18.59117 -18.14798 -17.77699 -17.41398 -17.07511 -16.61233 -16.37855 -16.16102 -15.95999 -15.76672 -15.52020 -15.49326 -15.42506 -14.67537 -14.26917 -14.20294 -14.06682 -13.79957 -13.35003 -13.18095 -12.88861 -12.63861 -12.42508 -12.38010 -12.25235 -12.21563 -12.05862 -11.60701 -11.27018 -11.00205 -10.98222 -10.73060 -9.98083 -9.40724 -9.21009 -8.85187 -8.59582 -6.28061 -0.17643 -0.06752 0.02724 0.28926 0.61925 1.23091 1.28397 1.43187 1.56035 1.61800 1.90636 2.27387 2.48041 2.48635 2.72916 2.95659 3.10675 3.12396 3.50463 3.76954 3.91007 3.97147 4.15335 4.23102 4.38987 4.44171 4.47331 4.53640 4.68200 4.75375 4.99715 5.03953 5.15800 5.24650 5.26622 5.44047 5.45134 5.53809 5.64096 5.70236 5.73999 5.81639 6.04466 6.11978 6.43342 6.77125 6.87663 7.28808 7.55363 8.50565 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015862 B = 0.002703 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.825222 B =10355.531565 C =12106.957437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.402 4.402 8 H 0.097 0.903 9 O -0.209 6.209 10 C 0.168 3.832 11 C -0.246 4.246 12 C -0.035 4.035 13 C -0.184 4.184 14 C -0.031 4.031 15 C -0.223 4.223 16 C 0.560 3.440 17 O -0.567 6.567 18 N -0.496 5.496 19 N -0.499 5.499 20 C 0.501 3.499 21 N -0.610 5.610 22 C 0.284 3.716 23 C -0.133 4.133 24 C -0.027 4.027 25 C -0.142 4.142 26 C 0.093 3.907 27 N -0.287 5.287 28 N -0.413 5.413 29 H 0.286 0.714 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.158 0.842 34 H 0.437 0.563 35 H 0.443 0.557 36 H 0.173 0.827 37 H 0.198 0.802 38 H 0.207 0.793 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.257 -7.851 -2.612 35.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.173 4.173 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.478 4.478 8 H 0.114 0.886 9 O -0.112 6.112 10 C 0.114 3.886 11 C -0.265 4.265 12 C -0.053 4.053 13 C -0.202 4.202 14 C -0.050 4.050 15 C -0.229 4.229 16 C 0.350 3.650 17 O -0.445 6.445 18 N -0.247 5.247 19 N -0.238 5.238 20 C 0.133 3.867 21 N -0.349 5.349 22 C 0.034 3.966 23 C -0.155 4.155 24 C -0.053 4.053 25 C -0.164 4.164 26 C -0.035 4.035 27 N -0.061 5.061 28 N -0.257 5.257 29 H 0.096 0.904 30 H 0.139 0.861 31 H 0.174 0.826 32 H 0.187 0.813 33 H 0.176 0.824 34 H 0.282 0.718 35 H 0.288 0.712 36 H 0.191 0.809 37 H 0.215 0.785 38 H 0.224 0.776 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 33.091 -6.461 -2.450 33.805 hybrid contribution -0.805 1.086 0.057 1.353 sum 32.287 -5.375 -2.394 32.818 Atomic orbital electron populations 1.69674 1.06330 1.29553 1.49243 1.25011 0.95623 1.01309 0.95374 0.85452 0.79124 0.78755 0.78954 1.20315 1.19047 1.19110 1.20916 0.78188 0.96415 1.52236 0.88610 1.83769 1.21031 1.26926 1.79518 1.19641 0.91495 0.85962 0.91457 1.21344 1.00760 0.92614 1.11779 1.21501 0.95688 0.96395 0.91700 1.21237 0.93127 0.99175 1.06703 1.21323 1.00529 0.89607 0.93512 1.18774 0.89745 0.93202 1.21162 1.18546 0.79794 0.90078 0.76559 1.90863 1.71365 1.30740 1.51530 1.44461 1.02737 1.00835 1.76670 1.41660 0.97058 1.01922 1.83128 1.19999 0.85286 0.88336 0.93064 1.70426 1.01499 1.26509 1.36455 1.22177 0.93389 0.83852 0.97196 1.20732 0.87544 1.01503 1.05683 1.21890 0.97970 0.95104 0.90354 1.21611 0.98507 0.94192 1.02057 1.22355 0.79591 1.02323 0.99274 1.47459 1.05978 1.07224 1.45401 1.78671 0.86081 1.16452 1.44539 0.90428 0.86141 0.82579 0.81273 0.82449 0.71826 0.71208 0.80914 0.78526 0.77615 0.79499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.75 13.96 21.62 0.30 -55.45 16 2 C 0.03 1.68 5.49 84.85 0.47 2.14 16 3 Si 0.95 51.50 28.62 68.60 1.96 53.46 16 4 H -0.28 -14.86 7.11 99.48 0.71 -14.16 16 5 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -15.48 7.11 99.48 0.71 -14.77 16 7 C -0.40 -24.52 9.95 67.93 0.68 -23.84 16 8 H 0.10 5.86 5.44 -2.91 -0.02 5.84 16 9 O -0.21 -12.19 6.67 0.73 0.00 -12.19 16 10 C 0.17 8.17 6.66 22.91 0.15 8.32 16 11 C -0.25 -10.30 9.16 22.36 0.20 -10.09 16 12 C -0.03 -1.04 10.03 22.30 0.22 -0.81 16 13 C -0.18 -4.59 10.03 22.25 0.22 -4.37 16 14 C -0.03 -0.89 9.53 22.52 0.21 -0.68 16 15 C -0.22 -9.04 5.89 -19.99 -0.12 -9.16 16 16 C 0.56 24.08 7.88 86.70 0.68 24.77 16 17 O -0.57 -30.05 15.00 16.88 0.25 -29.80 16 18 N -0.50 -17.22 6.27 -175.81 -1.10 -18.33 16 19 N -0.50 -17.67 6.46 -59.27 -0.38 -18.05 16 20 C 0.50 16.51 9.03 261.12 2.36 18.87 16 21 N -0.61 -17.90 10.75 -195.66 -2.10 -20.01 16 22 C 0.28 6.42 7.87 134.06 1.06 7.48 16 23 C -0.13 -1.47 10.10 22.38 0.23 -1.25 16 24 C -0.03 -0.07 10.07 22.29 0.22 0.15 16 25 C -0.14 -0.37 9.99 22.06 0.22 -0.15 16 26 C 0.09 1.05 11.20 83.38 0.93 1.99 16 27 N -0.29 -6.52 3.89 -192.98 -0.75 -7.27 16 28 N -0.41 -12.86 12.81 -59.30 -0.76 -13.62 16 29 H 0.29 16.20 8.31 -92.71 -0.77 15.43 16 30 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 31 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.16 3.22 6.40 -2.91 -0.02 3.20 16 34 H 0.44 12.57 6.32 -213.32 -1.35 11.22 16 35 H 0.44 16.47 8.12 -213.32 -1.73 14.73 16 36 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.20 -1.24 8.06 -2.91 -0.02 -1.26 16 38 H 0.21 -1.32 8.06 -2.91 -0.02 -1.35 16 39 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -90.78 347.21 3.25 -87.53 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -1.92 Total: 20.36 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 7.74 Total: 13.36 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -4.80 Total: -132.73 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: 0.26 Total: -41.99 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 1.96 Total: 53.46 kcal Total: -90.78 3.25 -87.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191897857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.492 kcal (2) G-P(sol) polarization free energy of solvation -90.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds