Wall clock time and date at job start Tue Mar 31 2020 22:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48491 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46883 * 300.00017 * 3 2 1 6 6 H 1.48505 * 109.47029 * 59.99499 * 3 2 1 7 7 C 1.37875 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47079 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47307 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00534 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99391 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00310 * 180.02562 * 12 11 10 15 15 N 1.46507 * 109.46754 * 180.02562 * 14 12 11 16 16 C 1.34781 * 119.99494 * 179.97438 * 15 14 12 17 17 O 1.21586 * 119.99927 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99516 * 180.02562 * 16 15 14 19 19 C 1.46505 * 119.99664 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.47014 * 179.97438 * 19 18 16 21 21 C 1.38241 * 119.98981 * 269.72617 * 20 19 18 22 22 C 1.38210 * 120.01139 * 179.72300 * 21 20 19 23 23 C 1.38349 * 119.98969 * 0.55498 * 22 21 20 24 24 Cl 1.73598 * 120.01695 * 179.70185 * 23 22 21 25 25 C 1.38361 * 119.97127 * 359.71727 * 23 22 21 26 26 C 1.38214 * 119.98666 * 0.02562 * 25 23 22 27 27 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46744 * 60.00677 * 9 7 2 29 29 H 1.08990 * 109.47863 * 300.00169 * 9 7 2 30 30 H 1.08996 * 109.46984 * 60.00396 * 10 9 7 31 31 H 1.09003 * 109.47197 * 300.00532 * 10 9 7 32 32 H 0.97001 * 119.99833 * 0.02562 * 11 10 9 33 33 H 1.08996 * 109.47216 * 60.00097 * 14 12 11 34 34 H 1.08998 * 109.46735 * 300.00009 * 14 12 11 35 35 H 0.97000 * 120.00254 * 0.02562 * 15 14 12 36 36 H 0.97000 * 120.00231 * 0.02562 * 18 16 15 37 37 H 1.09000 * 109.46864 * 60.00469 * 19 18 16 38 38 H 1.09000 * 109.47078 * 299.99722 * 19 18 16 39 39 H 1.08002 * 119.99152 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.00562 * 180.27305 * 22 21 20 41 41 H 1.07999 * 120.00328 * 179.97438 * 25 23 22 42 42 H 1.07997 * 119.99198 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 2.1864 -6.0980 0.0047 13 8 3.3993 -6.0980 0.0061 14 6 1.4329 -7.4031 0.0047 15 7 2.3850 -8.5166 0.0070 16 6 1.9356 -9.7874 0.0079 17 8 0.7402 -10.0094 0.0063 18 7 2.8114 -10.8117 0.0106 19 6 2.3230 -12.1929 0.0110 20 6 3.4952 -13.1402 0.0136 21 6 4.0308 -13.5800 -1.1826 22 6 5.1094 -14.4442 -1.1808 23 6 5.6458 -14.8782 0.0183 24 17 6.9956 -15.9698 0.0214 25 6 5.1057 -14.4422 1.2152 26 6 4.0304 -13.5737 1.2122 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5574 -0.8881 29 1 0.6246 -2.5564 0.8918 30 1 2.8717 -3.6036 0.8927 31 1 2.8719 -3.6051 -0.8873 32 1 0.5427 -4.9308 0.0026 33 1 0.8073 -7.4614 -0.8860 34 1 0.8053 -7.4602 0.8940 35 1 3.3386 -8.3394 0.0087 36 1 3.7651 -10.6345 0.0123 37 1 1.7193 -12.3650 -0.8800 38 1 1.7158 -12.3633 0.9000 39 1 3.6094 -13.2443 -2.1186 40 1 5.5306 -14.7842 -2.1154 41 1 5.5237 -14.7810 2.1516 42 1 3.6085 -13.2336 2.1463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273187039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:52 Heat of formation + Delta-G solvation = -61.079423 kcal Electronic energy + Delta-G solvation = -24528.053192 eV Core-core repulsion = 20533.370874 eV Total energy + Delta-G solvation = -3994.682318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52489 -39.86484 -39.11648 -37.09549 -35.36801 -35.05177 -34.35455 -32.93186 -31.69778 -31.67281 -30.05599 -27.92833 -26.01478 -24.45052 -23.44581 -21.98836 -21.25324 -21.00185 -20.38543 -18.98375 -17.76091 -16.88625 -16.62149 -16.41978 -16.10086 -15.90920 -15.64267 -15.34165 -15.04142 -14.56093 -14.49108 -14.15080 -14.13512 -13.87883 -13.76274 -13.69905 -13.10505 -12.95474 -12.36766 -12.34566 -12.07579 -11.99735 -11.88667 -11.36263 -11.26370 -11.09128 -10.67950 -10.50253 -10.41558 -9.97005 -9.64723 -9.57878 -9.55642 -9.27633 -9.24645 -9.08701 -8.66072 -8.43425 -6.13322 -4.16528 0.42580 0.69801 1.57984 2.37474 2.75436 3.01877 3.05880 3.25774 3.33532 3.37826 3.55892 4.08832 4.13191 4.16886 4.30775 4.38270 4.67445 4.71632 4.88758 5.03518 5.11314 5.24007 5.27279 5.31609 5.34772 5.36978 5.57512 5.63688 5.93185 6.09542 6.15181 6.18205 6.25655 6.28041 6.62442 6.66714 6.77209 7.45433 7.55516 7.76199 7.82989 7.85932 8.20870 8.37865 8.42571 8.89511 9.48757 10.98234 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.001354 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.516472 B =20673.243644 C =21395.123756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.121 3.879 11 N -0.714 5.714 12 C 0.501 3.499 13 O -0.551 6.551 14 C 0.118 3.882 15 N -0.731 5.731 16 C 0.708 3.292 17 O -0.592 6.592 18 N -0.744 5.744 19 C 0.181 3.819 20 C -0.104 4.104 21 C -0.086 4.086 22 C -0.113 4.113 23 C -0.028 4.028 24 Cl -0.069 7.069 25 C -0.113 4.113 26 C -0.086 4.086 27 H 0.262 0.738 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.402 0.598 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.408 0.592 36 H 0.399 0.601 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.956 -32.569 0.038 33.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.364 5.364 12 C 0.285 3.715 13 O -0.430 6.430 14 C -0.010 4.010 15 N -0.390 5.390 16 C 0.408 3.592 17 O -0.470 6.470 18 N -0.400 5.400 19 C 0.057 3.943 20 C -0.104 4.104 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.055 4.055 24 Cl -0.040 7.040 25 C -0.131 4.131 26 C -0.104 4.104 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.245 0.755 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.671 -32.701 0.037 33.589 hybrid contribution 0.966 1.021 0.002 1.406 sum 8.637 -31.680 0.039 32.836 Atomic orbital electron populations 1.69960 1.06091 1.26838 1.50278 1.24994 0.94891 0.99437 0.94927 0.86457 0.80138 0.83319 0.77650 1.19596 1.20917 1.20911 1.21070 0.93266 0.90337 1.51470 0.92192 1.19347 0.94212 0.91071 0.98018 1.21785 0.96110 0.81194 1.00963 1.46258 1.10865 1.06354 1.72923 1.20438 0.88283 0.85754 0.76994 1.90663 1.13868 1.87482 1.51017 1.20939 0.91579 0.83710 1.04769 1.44738 1.10996 1.03435 1.79794 1.15773 0.85195 0.80370 0.77898 1.90943 1.13925 1.84140 1.58029 1.45072 1.09260 1.04667 1.81022 1.20014 0.92750 0.77912 1.03615 1.20026 0.97947 0.99036 0.93437 1.21127 0.95015 0.96031 0.98273 1.21103 0.96751 0.98205 0.97086 1.21051 0.92468 0.96641 0.95326 1.98391 1.44284 1.62403 1.98961 1.21107 0.96774 0.98147 0.97118 1.21128 0.95059 0.96015 0.98247 0.92844 0.95796 0.95807 0.92346 0.92355 0.76422 0.88501 0.88512 0.75454 0.76690 0.90358 0.90349 0.84622 0.84641 0.84642 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 11 N -0.71 -11.40 5.56 -60.30 -0.33 -11.74 16 12 C 0.50 7.57 7.90 -10.99 -0.09 7.48 16 13 O -0.55 -10.00 15.67 5.55 0.09 -9.91 16 14 C 0.12 1.41 6.15 -5.19 -0.03 1.38 16 15 N -0.73 -8.33 5.53 -66.41 -0.37 -8.70 16 16 C 0.71 8.27 8.57 -86.92 -0.74 7.53 16 17 O -0.59 -8.97 16.34 5.29 0.09 -8.88 16 18 N -0.74 -6.03 5.55 -66.41 -0.37 -6.40 16 19 C 0.18 1.26 5.80 -5.19 -0.03 1.23 16 20 C -0.10 -0.59 5.25 -104.62 -0.55 -1.14 16 21 C -0.09 -0.46 9.70 -39.59 -0.38 -0.84 16 22 C -0.11 -0.63 9.83 -39.55 -0.39 -1.02 16 23 C -0.03 -0.18 6.32 -39.50 -0.25 -0.43 16 24 Cl -0.07 -0.45 28.96 -51.86 -1.50 -1.95 16 25 C -0.11 -0.63 9.83 -39.54 -0.39 -1.02 16 26 C -0.09 -0.46 9.70 -39.59 -0.38 -0.84 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.40 5.49 8.47 -40.82 -0.35 5.14 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.41 4.44 7.45 -40.82 -0.30 4.14 16 36 H 0.40 2.54 8.48 -40.82 -0.35 2.20 16 37 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -33.13 383.77 -10.32 -43.44 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.60 Total: 5.36 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -3.81 Total: 1.92 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.33 Total: -51.78 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.17 Total: -18.80 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.13 -10.32 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273187039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.635 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds