Wall clock time and date at job start Tue Mar 31 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48491 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46883 * 300.00017 * 3 2 1 6 6 H 1.48505 * 109.47029 * 59.99499 * 3 2 1 7 7 C 1.37875 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47079 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47307 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00534 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99391 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00310 * 180.02562 * 12 11 10 15 15 N 1.46507 * 109.46754 * 180.02562 * 14 12 11 16 16 C 1.34781 * 119.99494 * 179.97438 * 15 14 12 17 17 O 1.21586 * 119.99927 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99516 * 180.02562 * 16 15 14 19 19 C 1.46505 * 119.99664 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.47014 * 179.97438 * 19 18 16 21 21 C 1.38241 * 119.98981 * 269.72617 * 20 19 18 22 22 C 1.38210 * 120.01139 * 179.72300 * 21 20 19 23 23 C 1.38349 * 119.98969 * 0.55498 * 22 21 20 24 24 Cl 1.73598 * 120.01695 * 179.70185 * 23 22 21 25 25 C 1.38361 * 119.97127 * 359.71727 * 23 22 21 26 26 C 1.38214 * 119.98666 * 0.02562 * 25 23 22 27 27 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46744 * 60.00677 * 9 7 2 29 29 H 1.08990 * 109.47863 * 300.00169 * 9 7 2 30 30 H 1.08996 * 109.46984 * 60.00396 * 10 9 7 31 31 H 1.09003 * 109.47197 * 300.00532 * 10 9 7 32 32 H 0.97001 * 119.99833 * 0.02562 * 11 10 9 33 33 H 1.08996 * 109.47216 * 60.00097 * 14 12 11 34 34 H 1.08998 * 109.46735 * 300.00009 * 14 12 11 35 35 H 0.97000 * 120.00254 * 0.02562 * 15 14 12 36 36 H 0.97000 * 120.00231 * 0.02562 * 18 16 15 37 37 H 1.09000 * 109.46864 * 60.00469 * 19 18 16 38 38 H 1.09000 * 109.47078 * 299.99722 * 19 18 16 39 39 H 1.08002 * 119.99152 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.00562 * 180.27305 * 22 21 20 41 41 H 1.07999 * 120.00328 * 179.97438 * 25 23 22 42 42 H 1.07997 * 119.99198 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 2.1864 -6.0980 0.0047 13 8 3.3993 -6.0980 0.0061 14 6 1.4329 -7.4031 0.0047 15 7 2.3850 -8.5166 0.0070 16 6 1.9356 -9.7874 0.0079 17 8 0.7402 -10.0094 0.0063 18 7 2.8114 -10.8117 0.0106 19 6 2.3230 -12.1929 0.0110 20 6 3.4952 -13.1402 0.0136 21 6 4.0308 -13.5800 -1.1826 22 6 5.1094 -14.4442 -1.1808 23 6 5.6458 -14.8782 0.0183 24 17 6.9956 -15.9698 0.0214 25 6 5.1057 -14.4422 1.2152 26 6 4.0304 -13.5737 1.2122 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5574 -0.8881 29 1 0.6246 -2.5564 0.8918 30 1 2.8717 -3.6036 0.8927 31 1 2.8719 -3.6051 -0.8873 32 1 0.5427 -4.9308 0.0026 33 1 0.8073 -7.4614 -0.8860 34 1 0.8053 -7.4602 0.8940 35 1 3.3386 -8.3394 0.0087 36 1 3.7651 -10.6345 0.0123 37 1 1.7193 -12.3650 -0.8800 38 1 1.7158 -12.3633 0.9000 39 1 3.6094 -13.2443 -2.1186 40 1 5.5306 -14.7842 -2.1154 41 1 5.5237 -14.7810 2.1516 42 1 3.6085 -13.2336 2.1463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273187039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:51 Heat of formation + Delta-G solvation = -84.063554 kcal Electronic energy + Delta-G solvation = -24529.049859 eV Core-core repulsion = 20533.370874 eV Total energy + Delta-G solvation = -3995.678985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40824 -40.64123 -40.09996 -37.58153 -36.72843 -35.93966 -35.42101 -34.83502 -32.35180 -32.07652 -31.69402 -29.04236 -26.94869 -26.03678 -23.85208 -22.97889 -22.44710 -21.99490 -21.63436 -19.89853 -18.53715 -18.33151 -17.69478 -17.41062 -17.19272 -16.73743 -16.59615 -16.39713 -16.13349 -16.11581 -15.28718 -15.20904 -15.14045 -14.51376 -14.49679 -14.29755 -14.25970 -14.12826 -14.02774 -13.41126 -13.20739 -12.93605 -12.55537 -12.51930 -12.46294 -12.35068 -12.23711 -11.79996 -11.69271 -11.48792 -11.44296 -10.97399 -10.60336 -10.46907 -10.07479 -10.04269 -9.83987 -9.71295 -8.23299 -6.33417 -0.03074 0.29346 1.12602 1.41674 1.43045 1.51899 1.52619 1.56282 2.10575 2.27359 2.45191 2.64083 3.12053 3.34822 3.59764 3.69321 3.76734 3.93007 4.21927 4.31539 4.36376 4.39047 4.49433 4.52676 4.61912 4.64143 4.76625 4.87741 4.98744 5.14752 5.22729 5.23877 5.28989 5.40766 5.48852 5.49760 5.60336 5.76549 5.79732 5.90823 6.16971 6.53108 6.80523 6.98448 7.15696 7.36175 7.50031 8.88608 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.001354 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.516472 B =20673.243644 C =21395.123756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.019 3.981 10 C 0.141 3.859 11 N -0.711 5.711 12 C 0.507 3.493 13 O -0.580 6.580 14 C 0.128 3.872 15 N -0.730 5.730 16 C 0.708 3.292 17 O -0.627 6.627 18 N -0.729 5.729 19 C 0.183 3.817 20 C -0.104 4.104 21 C -0.086 4.086 22 C -0.118 4.118 23 C -0.039 4.039 24 Cl -0.075 7.075 25 C -0.118 4.118 26 C -0.086 4.086 27 H 0.265 0.735 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.414 0.586 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.412 0.588 36 H 0.409 0.591 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.603 -33.143 0.039 34.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.018 4.018 10 C 0.018 3.982 11 N -0.362 5.362 12 C 0.294 3.706 13 O -0.461 6.461 14 C 0.000 4.000 15 N -0.388 5.388 16 C 0.407 3.593 17 O -0.509 6.509 18 N -0.385 5.385 19 C 0.060 3.940 20 C -0.105 4.105 21 C -0.105 4.105 22 C -0.137 4.137 23 C -0.066 4.066 24 Cl -0.046 7.046 25 C -0.137 4.137 26 C -0.105 4.105 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.250 0.750 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.249 0.751 36 H 0.245 0.755 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.340 -33.311 0.038 34.339 hybrid contribution 0.774 1.132 0.002 1.371 sum 9.114 -32.179 0.040 33.445 Atomic orbital electron populations 1.70060 1.07527 1.27887 1.51126 1.25846 0.95747 1.03037 0.94494 0.85420 0.79034 0.78930 0.77797 1.18889 1.20375 1.20366 1.21506 0.93625 0.91929 1.51321 0.92210 1.19169 0.94342 0.91795 0.96539 1.21253 0.94976 0.81832 1.00159 1.46036 1.11430 1.05418 1.73290 1.20882 0.87924 0.86263 0.75569 1.90654 1.15336 1.87937 1.52128 1.20867 0.91237 0.81830 1.06041 1.44699 1.11036 1.03329 1.79779 1.15868 0.85012 0.80720 0.77679 1.90922 1.15526 1.84623 1.59788 1.45006 1.09403 1.04463 1.79671 1.20032 0.93227 0.77325 1.03429 1.19922 0.97694 0.99038 0.93828 1.21276 0.94792 0.95732 0.98694 1.21271 0.96814 0.98186 0.97418 1.21221 0.92564 0.96877 0.95900 1.98387 1.44615 1.62638 1.98983 1.21274 0.96835 0.98128 0.97453 1.21277 0.94836 0.95720 0.98664 0.92601 0.97170 0.97181 0.93161 0.93168 0.74962 0.87168 0.87180 0.75066 0.75495 0.90574 0.90567 0.83447 0.83602 0.83603 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 13.29 21.45 0.28 -53.20 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.55 -29.66 9.11 25.60 0.23 -29.42 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 0.92 5.09 29.85 0.15 1.07 16 10 C 0.14 5.67 5.61 86.38 0.48 6.15 16 11 N -0.71 -22.12 5.56 -463.06 -2.57 -24.69 16 12 C 0.51 14.71 7.90 87.66 0.69 15.40 16 13 O -0.58 -20.47 15.67 -3.04 -0.05 -20.52 16 14 C 0.13 2.83 6.15 85.63 0.53 3.36 16 15 N -0.73 -15.47 5.53 -482.29 -2.67 -18.14 16 16 C 0.71 15.50 8.57 179.06 1.53 17.03 16 17 O -0.63 -18.25 16.34 -3.99 -0.07 -18.32 16 18 N -0.73 -10.68 5.55 -482.28 -2.68 -13.36 16 19 C 0.18 2.29 5.80 85.63 0.50 2.79 16 20 C -0.10 -1.03 5.25 -19.86 -0.10 -1.13 16 21 C -0.09 -0.79 9.70 22.26 0.22 -0.58 16 22 C -0.12 -1.18 9.83 22.29 0.22 -0.96 16 23 C -0.04 -0.44 6.32 22.33 0.14 -0.30 16 24 Cl -0.08 -0.91 28.96 -2.72 -0.08 -0.99 16 25 C -0.12 -1.18 9.83 22.29 0.22 -0.96 16 26 C -0.09 -0.79 9.70 22.27 0.22 -0.58 16 27 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.41 10.92 8.47 -92.71 -0.79 10.13 16 33 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.41 8.34 7.45 -92.71 -0.69 7.65 16 36 H 0.41 4.47 8.48 -92.71 -0.79 3.69 16 37 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 38 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 39 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -69.77 383.77 -1.49 -71.27 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -1.18 Total: 20.30 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 5.49 Total: 12.75 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -7.63 Total: -109.38 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.11 Total: -38.84 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -69.77 -1.49 -71.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273187039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.795 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds