Wall clock time and date at job start Tue Mar 31 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99753 * 2 1 4 4 H 1.48496 * 109.46921 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46826 * 299.99784 * 3 2 1 6 6 H 1.48497 * 109.47620 * 59.99800 * 3 2 1 7 7 C 1.37869 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00638 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47152 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99559 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00637 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99648 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99771 * 175.22042 * 14 12 11 16 16 H 1.09006 * 109.47481 * 326.17229 * 15 14 12 17 17 C 1.53001 * 109.47160 * 206.17317 * 15 14 12 18 18 C 1.50701 * 109.47036 * 65.61122 * 17 15 14 19 19 N 1.34774 * 120.00385 * 175.57725 * 18 17 15 20 20 O 1.21282 * 120.00080 * 355.58055 * 18 17 15 21 21 C 1.50696 * 109.47756 * 86.17445 * 15 14 12 22 22 C 1.38265 * 119.99163 * 39.71974 * 21 15 14 23 23 C 1.38219 * 120.02515 * 179.77268 * 22 21 15 24 24 C 1.38232 * 120.01582 * 0.50876 * 23 22 21 25 25 C 1.38332 * 119.98581 * 359.74418 * 24 23 22 26 26 Cl 1.73598 * 120.01292 * 180.02562 * 25 24 23 27 27 C 1.38192 * 119.99622 * 220.00264 * 21 15 14 28 28 H 0.97005 * 120.00085 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47328 * 59.99529 * 9 7 2 30 30 H 1.09003 * 109.47320 * 299.99698 * 9 7 2 31 31 H 1.08993 * 109.47454 * 59.99836 * 10 9 7 32 32 H 1.08999 * 109.47009 * 299.99693 * 10 9 7 33 33 H 0.97000 * 120.00402 * 359.97438 * 11 10 9 34 34 H 0.96998 * 120.00131 * 354.94136 * 14 12 11 35 35 H 1.08997 * 109.47325 * 185.61029 * 17 15 14 36 36 H 1.08995 * 109.47097 * 305.61760 * 17 15 14 37 37 H 0.97004 * 119.99691 * 0.02562 * 19 18 17 38 38 H 0.97006 * 120.00700 * 179.97438 * 19 18 17 39 39 H 1.07997 * 119.98497 * 0.02562 * 22 21 15 40 40 H 1.08009 * 119.99309 * 180.25649 * 23 22 21 41 41 H 1.08000 * 120.00925 * 179.73249 * 24 23 22 42 42 H 1.08001 * 120.00705 * 359.97438 * 27 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 -0.0001 12 6 2.1868 -6.0979 -0.0007 13 8 3.4027 -6.0979 -0.0003 14 7 1.5129 -7.2651 -0.0008 15 6 2.2416 -8.5315 -0.1072 16 1 3.1188 -8.3941 -0.7394 17 6 1.3299 -9.5942 -0.7240 18 6 1.0066 -9.2146 -2.1461 19 7 0.2871 -10.0512 -2.9200 20 8 1.3939 -8.1563 -2.5943 21 6 2.6764 -8.9779 1.2649 22 6 1.8274 -8.8191 2.3447 23 6 2.2237 -9.2326 3.6027 24 6 3.4731 -9.7955 3.7839 25 6 4.3250 -9.9498 2.7049 26 17 5.8940 -10.6573 2.9316 27 6 3.9257 -9.5405 1.4448 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8721 -3.6043 0.8904 32 1 2.8720 -3.6042 -0.8895 33 1 0.5429 -4.9308 0.0000 34 1 0.5458 -7.2668 0.0737 35 1 1.8367 -10.5592 -0.7118 36 1 0.4075 -9.6608 -0.1472 37 1 -0.0229 -10.8975 -2.5615 38 1 0.0787 -9.8067 -3.8353 39 1 0.8528 -8.3756 2.2043 40 1 1.5585 -9.1121 4.4450 41 1 3.7843 -10.1146 4.7676 42 1 4.5904 -9.6607 0.6021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273267929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:17 Heat of formation + Delta-G solvation = -62.781861 kcal Electronic energy + Delta-G solvation = -26372.786520 eV Core-core repulsion = 22378.030379 eV Total energy + Delta-G solvation = -3994.756141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56477 -39.31907 -38.97279 -36.75140 -35.53943 -34.48877 -33.93443 -32.81647 -31.73418 -30.88037 -30.02426 -29.10912 -25.20896 -24.28098 -22.94793 -21.77807 -21.01359 -20.52599 -20.30753 -18.21621 -17.61287 -17.43141 -16.78631 -16.44147 -16.11970 -15.68818 -15.33161 -14.94691 -14.90612 -14.44582 -14.28993 -14.00928 -13.79355 -13.64352 -13.47604 -13.36103 -12.83749 -12.61753 -12.21993 -12.10658 -11.74201 -11.65007 -11.43088 -11.10284 -11.08592 -10.98862 -10.56035 -10.26106 -10.20496 -9.96271 -9.80916 -9.48462 -9.19480 -9.12438 -9.02498 -8.83307 -8.42508 -8.13871 -6.03858 -4.05809 0.93425 1.03762 1.92215 2.39772 3.06823 3.15199 3.32504 3.39818 3.43402 3.46311 3.76088 4.38471 4.39637 4.44739 4.59170 4.71851 4.74592 4.82776 4.93413 5.06541 5.13369 5.22449 5.33377 5.37444 5.63470 5.68922 5.99102 6.09097 6.23439 6.40520 6.48246 6.50645 6.56341 6.67658 6.87862 7.00182 7.13768 7.32009 7.64953 7.71687 7.96363 8.01370 8.33546 8.55714 8.99974 9.15044 9.58644 11.07958 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.002674 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.871290 B =10470.270520 C =12303.217381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.142 3.858 11 N -0.738 5.738 12 C 0.708 3.292 13 O -0.593 6.593 14 N -0.737 5.737 15 C 0.224 3.776 16 H 0.106 0.894 17 C -0.148 4.148 18 C 0.509 3.491 19 N -0.861 5.861 20 O -0.517 6.517 21 C -0.079 4.079 22 C -0.097 4.097 23 C -0.108 4.108 24 C -0.112 4.112 25 C -0.034 4.034 26 Cl -0.074 7.074 27 C -0.092 4.092 28 H 0.260 0.740 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.391 0.609 34 H 0.391 0.609 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.399 0.601 38 H 0.402 0.598 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -29.682 2.989 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.019 3.981 11 N -0.391 5.391 12 C 0.408 3.592 13 O -0.472 6.472 14 N -0.392 5.392 15 C 0.117 3.883 16 H 0.124 0.876 17 C -0.189 4.189 18 C 0.293 3.707 19 N -0.425 5.425 20 O -0.391 6.391 21 C -0.081 4.081 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.060 4.060 26 Cl -0.046 7.046 27 C -0.112 4.112 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.224 0.776 34 H 0.224 0.776 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.227 0.773 38 H 0.232 0.768 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.126 -28.819 2.857 28.960 hybrid contribution -0.699 0.526 -0.095 0.880 sum -0.573 -28.293 2.762 28.433 Atomic orbital electron populations 1.69972 1.06079 1.26642 1.50782 1.24994 0.94885 0.99377 0.95102 0.86467 0.80238 0.83387 0.77541 1.19549 1.20979 1.20985 1.21110 0.93326 0.90391 1.50810 0.92177 1.19323 0.94271 0.91124 0.97718 1.21551 0.95567 0.80453 1.00532 1.45463 1.09684 1.05292 1.78643 1.15917 0.85568 0.80312 0.77443 1.90880 1.11751 1.86484 1.58049 1.44901 1.09147 1.04107 1.81013 1.19178 0.95671 0.81875 0.91618 0.87644 1.22020 1.02361 1.00960 0.93517 1.20563 0.77851 0.84152 0.88110 1.43905 1.58268 1.23214 1.17126 1.90895 1.50960 1.22883 1.74318 1.20218 0.93766 0.97811 0.96330 1.21036 0.99988 0.98303 0.92172 1.21095 0.95777 0.98255 0.97517 1.21047 0.93790 1.00215 0.98035 1.20870 0.87789 1.02117 0.95249 1.98370 1.26348 1.82473 1.97366 1.20887 0.95986 0.98291 0.95991 0.92994 0.95997 0.96055 0.92929 0.92869 0.77604 0.77594 0.87226 0.87890 0.77290 0.76765 0.85569 0.85085 0.85122 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.23 5.61 -4.04 -0.02 3.21 16 11 N -0.74 -13.93 5.56 -65.22 -0.36 -14.29 16 12 C 0.71 13.09 8.53 -86.91 -0.74 12.35 16 13 O -0.59 -13.41 16.04 5.29 0.08 -13.33 16 14 N -0.74 -9.53 3.37 -59.81 -0.20 -9.74 16 15 C 0.22 2.45 1.71 -69.09 -0.12 2.34 16 16 H 0.11 1.49 7.33 -51.93 -0.38 1.11 16 17 C -0.15 -0.96 5.23 -27.88 -0.15 -1.10 16 18 C 0.51 4.58 7.99 -10.99 -0.09 4.49 16 19 N -0.86 -4.29 8.87 31.22 0.28 -4.01 16 20 O -0.52 -7.69 16.15 5.56 0.09 -7.60 16 21 C -0.08 -0.84 4.93 -104.63 -0.52 -1.35 16 22 C -0.10 -0.91 9.32 -39.58 -0.37 -1.28 16 23 C -0.11 -0.95 10.04 -39.59 -0.40 -1.35 16 24 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 25 C -0.03 -0.36 6.32 -39.50 -0.25 -0.60 16 26 Cl -0.07 -0.75 28.96 -51.86 -1.50 -2.25 16 27 C -0.09 -1.01 9.45 -39.55 -0.37 -1.38 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.39 6.40 8.49 -40.82 -0.35 6.05 16 34 H 0.39 3.95 8.64 -40.82 -0.35 3.60 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.40 0.62 8.83 -40.82 -0.36 0.26 16 38 H 0.40 2.00 8.93 -40.82 -0.36 1.63 16 39 H 0.13 1.00 7.71 -52.49 -0.40 0.59 16 40 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.13 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -37.94 380.70 -9.68 -47.62 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.55 Total: 6.44 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.96 Total: 0.50 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.45 Total: -54.00 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.17 Total: -20.93 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.94 -9.68 -47.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273267929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.161 kcal (2) G-P(sol) polarization free energy of solvation -37.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds