Wall clock time and date at job start Tue Mar 31 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99753 * 2 1 4 4 H 1.48496 * 109.46921 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46826 * 299.99784 * 3 2 1 6 6 H 1.48497 * 109.47620 * 59.99800 * 3 2 1 7 7 C 1.37869 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00638 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47152 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99559 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00637 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99648 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99771 * 175.22042 * 14 12 11 16 16 H 1.09006 * 109.47481 * 326.17229 * 15 14 12 17 17 C 1.53001 * 109.47160 * 206.17317 * 15 14 12 18 18 C 1.50701 * 109.47036 * 65.61122 * 17 15 14 19 19 N 1.34774 * 120.00385 * 175.57725 * 18 17 15 20 20 O 1.21282 * 120.00080 * 355.58055 * 18 17 15 21 21 C 1.50696 * 109.47756 * 86.17445 * 15 14 12 22 22 C 1.38265 * 119.99163 * 39.71974 * 21 15 14 23 23 C 1.38219 * 120.02515 * 179.77268 * 22 21 15 24 24 C 1.38232 * 120.01582 * 0.50876 * 23 22 21 25 25 C 1.38332 * 119.98581 * 359.74418 * 24 23 22 26 26 Cl 1.73598 * 120.01292 * 180.02562 * 25 24 23 27 27 C 1.38192 * 119.99622 * 220.00264 * 21 15 14 28 28 H 0.97005 * 120.00085 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47328 * 59.99529 * 9 7 2 30 30 H 1.09003 * 109.47320 * 299.99698 * 9 7 2 31 31 H 1.08993 * 109.47454 * 59.99836 * 10 9 7 32 32 H 1.08999 * 109.47009 * 299.99693 * 10 9 7 33 33 H 0.97000 * 120.00402 * 359.97438 * 11 10 9 34 34 H 0.96998 * 120.00131 * 354.94136 * 14 12 11 35 35 H 1.08997 * 109.47325 * 185.61029 * 17 15 14 36 36 H 1.08995 * 109.47097 * 305.61760 * 17 15 14 37 37 H 0.97004 * 119.99691 * 0.02562 * 19 18 17 38 38 H 0.97006 * 120.00700 * 179.97438 * 19 18 17 39 39 H 1.07997 * 119.98497 * 0.02562 * 22 21 15 40 40 H 1.08009 * 119.99309 * 180.25649 * 23 22 21 41 41 H 1.08000 * 120.00925 * 179.73249 * 24 23 22 42 42 H 1.08001 * 120.00705 * 359.97438 * 27 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 -0.0001 12 6 2.1868 -6.0979 -0.0007 13 8 3.4027 -6.0979 -0.0003 14 7 1.5129 -7.2651 -0.0008 15 6 2.2416 -8.5315 -0.1072 16 1 3.1188 -8.3941 -0.7394 17 6 1.3299 -9.5942 -0.7240 18 6 1.0066 -9.2146 -2.1461 19 7 0.2871 -10.0512 -2.9200 20 8 1.3939 -8.1563 -2.5943 21 6 2.6764 -8.9779 1.2649 22 6 1.8274 -8.8191 2.3447 23 6 2.2237 -9.2326 3.6027 24 6 3.4731 -9.7955 3.7839 25 6 4.3250 -9.9498 2.7049 26 17 5.8940 -10.6573 2.9316 27 6 3.9257 -9.5405 1.4448 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8721 -3.6043 0.8904 32 1 2.8720 -3.6042 -0.8895 33 1 0.5429 -4.9308 0.0000 34 1 0.5458 -7.2668 0.0737 35 1 1.8367 -10.5592 -0.7118 36 1 0.4075 -9.6608 -0.1472 37 1 -0.0229 -10.8975 -2.5615 38 1 0.0787 -9.8067 -3.8353 39 1 0.8528 -8.3756 2.2043 40 1 1.5585 -9.1121 4.4450 41 1 3.7843 -10.1146 4.7676 42 1 4.5904 -9.6607 0.6021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273267929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:16 Heat of formation + Delta-G solvation = -91.727622 kcal Electronic energy + Delta-G solvation = -26374.041703 eV Core-core repulsion = 22378.030379 eV Total energy + Delta-G solvation = -3996.011324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54638 -40.25949 -40.02512 -37.58056 -36.79000 -36.07168 -34.80913 -34.59686 -32.90814 -31.71082 -31.08534 -30.51557 -26.82235 -25.52157 -23.72657 -23.10069 -22.43499 -21.77012 -21.22163 -19.50377 -18.47040 -18.43760 -18.06414 -17.56954 -17.20101 -16.60067 -16.49951 -16.31978 -16.13944 -15.96924 -15.33465 -15.10298 -15.03079 -14.68861 -14.56310 -14.41352 -14.26903 -13.97061 -13.35631 -13.18733 -12.95600 -12.80863 -12.52635 -12.50620 -12.40633 -12.24148 -12.17659 -11.84984 -11.65613 -11.47773 -11.16004 -11.02515 -10.60466 -10.57543 -10.31368 -9.89116 -9.74816 -9.58650 -8.23920 -6.34041 0.18248 0.28734 1.14932 1.40863 1.41477 1.55172 1.71900 1.81879 2.28167 2.41640 2.55011 2.73487 3.10628 3.41766 3.65290 3.71616 3.88927 4.12249 4.15491 4.27883 4.41419 4.47697 4.51529 4.52843 4.61374 4.70033 4.85967 4.88174 4.93046 5.24861 5.32553 5.36623 5.42988 5.54627 5.60099 5.65186 5.79949 5.84874 5.96633 6.08685 6.18238 6.55312 6.78878 7.19223 7.35261 7.45555 7.69498 8.88354 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.002674 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.871290 B =10470.270520 C =12303.217381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.734 5.734 12 C 0.705 3.295 13 O -0.638 6.638 14 N -0.714 5.714 15 C 0.223 3.777 16 H 0.067 0.933 17 C -0.135 4.135 18 C 0.506 3.494 19 N -0.838 5.838 20 O -0.586 6.586 21 C -0.087 4.087 22 C -0.100 4.100 23 C -0.106 4.106 24 C -0.115 4.115 25 C -0.046 4.046 26 Cl -0.077 7.077 27 C -0.109 4.109 28 H 0.266 0.734 29 H 0.005 0.995 30 H 0.011 0.989 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.405 0.595 34 H 0.408 0.592 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.419 0.581 38 H 0.404 0.596 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -30.986 4.037 31.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.011 4.011 10 C 0.039 3.961 11 N -0.389 5.389 12 C 0.405 3.595 13 O -0.520 6.520 14 N -0.369 5.369 15 C 0.116 3.884 16 H 0.086 0.914 17 C -0.175 4.175 18 C 0.292 3.708 19 N -0.403 5.403 20 O -0.465 6.465 21 C -0.088 4.088 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.073 4.073 26 Cl -0.048 7.048 27 C -0.128 4.128 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.240 0.760 34 H 0.244 0.756 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.251 0.749 38 H 0.235 0.765 39 H 0.162 0.838 40 H 0.176 0.824 41 H 0.166 0.834 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.234 -30.240 3.907 30.516 hybrid contribution -0.340 0.813 -0.433 0.982 sum -1.574 -29.426 3.474 29.673 Atomic orbital electron populations 1.70066 1.07489 1.27930 1.51099 1.25864 0.95827 1.03049 0.94378 0.85391 0.78913 0.78722 0.77987 1.19121 1.20180 1.19945 1.21488 0.93535 0.91982 1.51449 0.92519 1.19107 0.94142 0.91586 0.96267 1.21007 0.94596 0.81400 0.99129 1.45156 1.10185 1.04460 1.79060 1.16082 0.85096 0.81260 0.77085 1.90848 1.13908 1.87238 1.60004 1.44702 1.09951 1.03139 1.79107 1.19248 0.95376 0.81888 0.91869 0.91435 1.22023 1.03298 1.00297 0.91887 1.20987 0.77252 0.83460 0.89127 1.43741 1.56388 1.23294 1.16848 1.90881 1.53957 1.25934 1.75754 1.20142 0.94002 0.98413 0.96285 1.21287 1.00551 0.97997 0.92023 1.21436 0.95790 0.97089 0.98094 1.21337 0.93864 0.99789 0.98408 1.21016 0.88055 1.02666 0.95564 1.98364 1.26595 1.82521 1.97345 1.20956 0.96344 0.99228 0.96267 0.92510 0.97617 0.97026 0.93926 0.94695 0.76019 0.75575 0.84138 0.84195 0.74906 0.76541 0.83764 0.82407 0.83450 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 13.29 21.44 0.28 -55.05 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.40 5.09 29.85 0.15 1.55 16 10 C 0.16 7.67 5.61 86.38 0.48 8.15 16 11 N -0.73 -28.14 5.56 -478.53 -2.66 -30.80 16 12 C 0.70 26.50 8.53 179.05 1.53 28.02 16 13 O -0.64 -29.91 16.04 -3.98 -0.06 -29.97 16 14 N -0.71 -18.04 3.37 -461.41 -1.56 -19.60 16 15 C 0.22 4.75 1.71 44.25 0.08 4.83 16 16 H 0.07 2.00 7.33 -2.38 -0.02 1.99 16 17 C -0.14 -1.42 5.23 29.85 0.16 -1.26 16 18 C 0.51 8.42 7.99 87.66 0.70 9.12 16 19 N -0.84 -6.50 8.87 -173.53 -1.54 -8.04 16 20 O -0.59 -17.71 16.15 -3.03 -0.05 -17.76 16 21 C -0.09 -1.73 4.93 -19.87 -0.10 -1.83 16 22 C -0.10 -1.65 9.32 22.27 0.21 -1.44 16 23 C -0.11 -1.58 10.04 22.26 0.22 -1.35 16 24 C -0.12 -1.94 9.83 22.29 0.22 -1.72 16 25 C -0.05 -0.95 6.32 22.33 0.14 -0.81 16 26 Cl -0.08 -1.53 28.96 -2.72 -0.08 -1.61 16 27 C -0.11 -2.35 9.45 22.29 0.21 -2.14 16 28 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 29 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.40 13.19 8.49 -92.71 -0.79 12.41 16 34 H 0.41 7.51 8.64 -92.71 -0.80 6.71 16 35 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.42 -0.10 8.83 -92.71 -0.82 -0.92 16 38 H 0.40 3.37 8.93 -92.70 -0.83 2.54 16 39 H 0.14 1.78 7.71 -2.91 -0.02 1.76 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.13 2.78 8.04 -2.91 -0.02 2.75 16 Total: -1.00 -85.41 380.70 -1.08 -86.48 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -2.13 Total: 18.99 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 4.69 Total: 10.51 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -5.47 Total: -113.50 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.11 Total: -47.73 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -85.41 -1.08 -86.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273267929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.244 kcal (2) G-P(sol) polarization free energy of solvation -85.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds