Wall clock time and date at job start Tue Mar 31 2020 22:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48504 * 109.46790 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46916 * 299.99505 * 3 2 1 6 6 H 1.48500 * 109.47286 * 60.00156 * 3 2 1 7 7 C 1.38796 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00103 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00275 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47710 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99592 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00595 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00290 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.54286 * 325.18004 * 14 13 11 16 16 C 1.53180 * 109.61247 * 85.40070 * 14 13 11 17 17 C 1.53091 * 109.16171 * 176.89208 * 16 14 13 18 18 O 1.42904 * 109.41422 * 302.39300 * 17 16 14 19 19 C 1.42907 * 114.09982 * 61.15789 * 18 17 16 20 20 H 1.09000 * 109.48670 * 58.82720 * 19 18 17 21 21 C 1.50699 * 109.47963 * 178.85818 * 19 18 17 22 22 C 1.38250 * 119.97575 * 40.27051 * 21 19 18 23 23 C 1.38194 * 120.02377 * 180.27953 * 22 21 19 24 24 C 1.38460 * 119.97497 * 359.41202 * 23 22 21 25 25 F 1.35105 * 120.02800 * 180.30394 * 24 23 22 26 26 C 1.38467 * 119.94896 * 0.28520 * 24 23 22 27 27 C 1.38197 * 119.97188 * 359.97438 * 26 24 23 28 28 C 1.53095 * 109.41400 * 298.84208 * 19 18 17 29 29 H 0.97003 * 120.00457 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47043 * 59.99772 * 10 9 7 31 31 H 1.09003 * 109.47500 * 300.00843 * 10 9 7 32 32 H 0.97000 * 119.99699 * 0.02562 * 13 11 10 33 33 H 1.08994 * 109.52218 * 296.80084 * 16 14 13 34 34 H 1.09002 * 109.52125 * 56.98894 * 16 14 13 35 35 H 1.08997 * 109.48318 * 62.37265 * 17 16 14 36 36 H 1.08999 * 109.47730 * 182.41595 * 17 16 14 37 37 H 1.07998 * 119.98560 * 359.97438 * 22 21 19 38 38 H 1.08002 * 120.01531 * 179.69754 * 23 22 21 39 39 H 1.07998 * 120.01314 * 180.02562 * 26 24 23 40 40 H 1.07994 * 119.98607 * 180.02562 * 27 26 24 41 41 H 1.09000 * 109.52104 * 177.51172 * 28 19 18 42 42 H 1.09001 * 109.52219 * 297.69886 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9875 -5.3027 0.0018 12 8 0.7912 -5.5023 0.0019 13 7 2.8442 -6.3431 0.0020 14 6 2.3305 -7.7151 0.0029 15 1 1.4132 -7.7605 0.5899 16 6 2.0413 -8.1568 -1.4350 17 6 1.5793 -9.6163 -1.4290 18 8 2.5841 -10.4302 -0.8206 19 6 2.8627 -10.0937 0.5400 20 1 1.9515 -10.1851 1.1311 21 6 3.9110 -11.0294 1.0845 22 6 4.9827 -11.4011 0.2942 23 6 5.9416 -12.2637 0.7906 24 6 5.8352 -12.7460 2.0841 25 9 6.7752 -13.5844 2.5725 26 6 4.7647 -12.3680 2.8769 27 6 3.8042 -11.5096 2.3765 28 6 3.3763 -8.6533 0.6131 29 1 -0.4851 0.8400 -0.0004 30 1 3.1252 -3.7309 0.8908 31 1 3.1239 -3.7317 -0.8891 32 1 3.8010 -6.1834 0.0022 33 1 1.2579 -7.5284 -1.8585 34 1 2.9474 -8.0641 -2.0338 35 1 0.6512 -9.7015 -0.8638 36 1 1.4131 -9.9492 -2.4536 37 1 5.0679 -11.0212 -0.7131 38 1 6.7761 -12.5578 0.1713 39 1 4.6809 -12.7432 3.8861 40 1 2.9694 -11.2143 2.9948 41 1 3.5475 -8.3801 1.6543 42 1 4.3094 -8.5706 0.0557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273320570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:48 Heat of formation + Delta-G solvation = -111.854459 kcal Electronic energy + Delta-G solvation = -25700.891508 eV Core-core repulsion = 21686.131164 eV Total energy + Delta-G solvation = -4014.760344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.26166 -40.57096 -39.33172 -38.38904 -35.18195 -32.98683 -32.45713 -31.87313 -31.54899 -29.51251 -28.80876 -25.54993 -24.77555 -24.07240 -23.44628 -21.85472 -20.63702 -20.31063 -18.12238 -17.89240 -17.11241 -17.01228 -16.43251 -16.06179 -15.93776 -15.62566 -15.40297 -15.14424 -14.83031 -14.74555 -14.33500 -14.14784 -13.95777 -13.82709 -13.51988 -13.44174 -13.16631 -12.67015 -12.56478 -12.27885 -12.12697 -11.72279 -11.65614 -11.38152 -11.17145 -11.09215 -11.04792 -10.81743 -10.69893 -10.09027 -9.83211 -9.52307 -9.43026 -9.10734 -8.99920 -8.94087 -8.26839 -6.53256 -6.24616 -3.95299 0.66387 0.82309 2.94036 3.02159 3.08453 3.19573 3.26003 3.30324 3.42538 3.64950 3.85624 4.17611 4.22607 4.31897 4.47371 4.51231 4.62791 4.69656 4.80929 4.86728 4.93160 4.99562 5.10182 5.10816 5.16555 5.28473 5.42597 5.48100 5.54132 5.56450 5.62085 5.69762 5.70407 5.83253 5.84823 5.86164 6.02634 6.08833 6.10383 6.44937 6.56592 6.86785 7.57220 7.64537 8.32679 8.54879 9.20991 10.82833 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.001892 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.318201 B =14797.971101 C =15508.092904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.734 5.734 14 C 0.147 3.853 15 H 0.090 0.910 16 C -0.169 4.169 17 C 0.066 3.934 18 O -0.375 6.375 19 C 0.138 3.862 20 H 0.073 0.927 21 C -0.090 4.090 22 C -0.062 4.062 23 C -0.156 4.156 24 C 0.098 3.902 25 F -0.141 7.141 26 C -0.154 4.154 27 C -0.079 4.079 28 C -0.152 4.152 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.083 0.917 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.740 -25.862 1.620 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.391 6.391 13 N -0.388 5.388 14 C 0.042 3.958 15 H 0.108 0.892 16 C -0.208 4.208 17 C -0.011 4.011 18 O -0.294 6.294 19 C 0.080 3.920 20 H 0.091 0.909 21 C -0.091 4.091 22 C -0.080 4.080 23 C -0.175 4.175 24 C 0.079 3.921 25 F -0.120 7.120 26 C -0.173 4.173 27 C -0.097 4.097 28 C -0.190 4.190 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.101 0.899 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.695 -26.250 1.550 27.696 hybrid contribution 2.518 1.484 0.191 2.929 sum 11.214 -24.766 1.741 27.242 Atomic orbital electron populations 1.70024 1.05948 1.27376 1.46917 1.24998 0.95039 0.99062 0.94526 0.86112 0.79584 0.81855 0.77920 1.19615 1.20556 1.20545 1.22904 0.94941 0.91619 1.58877 0.90872 1.85386 1.04897 0.96370 1.96719 1.23538 1.06616 0.95362 1.04948 1.20336 0.86551 0.86294 0.74832 1.90698 1.15335 1.85572 1.47488 1.46057 1.09941 1.05003 1.77766 1.20857 0.97614 0.81232 0.96143 0.89226 1.22650 1.03348 0.97068 0.97717 1.22593 0.90265 0.89477 0.98778 1.87933 1.59124 1.57542 1.24844 1.20738 0.95723 0.91400 0.84174 0.90889 1.19625 0.96113 0.99015 0.94315 1.20900 0.91940 0.95110 1.00052 1.21196 1.01533 1.00278 0.94510 1.17792 0.88257 0.92695 0.93349 1.91507 1.63368 1.68968 1.88117 1.21105 0.94580 1.00776 1.00862 1.20859 0.98540 0.95482 0.94799 1.22512 0.99650 0.94073 1.02797 0.92217 0.89219 0.89216 0.76778 0.89706 0.90776 0.92592 0.88231 0.84386 0.84617 0.84523 0.84692 0.89856 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.02 6.16 36.00 0.22 -2.79 16 11 C 0.53 9.48 7.82 -10.99 -0.09 9.40 16 12 O -0.52 -11.19 15.52 5.55 0.09 -11.10 16 13 N -0.73 -9.15 5.09 -53.63 -0.27 -9.42 16 14 C 0.15 1.58 2.54 -67.75 -0.17 1.41 16 15 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 16 C -0.17 -1.72 5.72 -26.59 -0.15 -1.87 16 17 C 0.07 0.56 6.84 37.20 0.25 0.82 16 18 O -0.38 -3.43 9.74 -35.23 -0.34 -3.77 16 19 C 0.14 1.10 2.85 -27.83 -0.08 1.02 16 20 H 0.07 0.54 8.00 -51.93 -0.42 0.13 16 21 C -0.09 -0.70 4.97 -104.62 -0.52 -1.22 16 22 C -0.06 -0.47 9.35 -39.59 -0.37 -0.84 16 23 C -0.16 -1.18 10.03 -39.52 -0.40 -1.58 16 24 C 0.10 0.82 7.30 -39.42 -0.29 0.53 16 25 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 26 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 27 C -0.08 -0.54 9.67 -39.59 -0.38 -0.93 16 28 C -0.15 -1.23 4.87 -26.59 -0.13 -1.36 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 31 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 32 H 0.40 3.88 8.61 -40.82 -0.35 3.53 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.14 0.97 7.78 -52.49 -0.41 0.56 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.14 0.68 8.04 -52.49 -0.42 0.25 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -34.05 372.79 -9.44 -43.49 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.76 Total: 1.02 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.30 Total: -11.75 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.46 Total: -34.62 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.26 Total: -14.87 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.05 -9.44 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273320570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.367 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds