Wall clock time and date at job start Tue Mar 31 2020 22:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86807 * 120.00153 * 2 1 4 4 H 1.48502 * 109.47018 * 240.00493 * 3 2 1 5 5 H 1.48502 * 109.46712 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46891 * 120.00290 * 3 2 1 7 7 C 1.38795 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00242 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00216 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47015 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00027 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99699 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99839 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.61248 * 34.78300 * 14 13 11 16 16 C 1.53168 * 109.54443 * 274.55666 * 14 13 11 17 17 C 1.53090 * 109.16383 * 297.11286 * 16 14 13 18 18 O 1.42897 * 109.41529 * 302.38908 * 17 16 14 19 19 C 1.42908 * 114.09789 * 61.15937 * 18 17 16 20 20 H 1.09001 * 109.47929 * 58.82316 * 19 18 17 21 21 C 1.50692 * 109.48275 * 178.85990 * 19 18 17 22 22 C 1.38243 * 119.97840 * 39.66554 * 21 19 18 23 23 C 1.38199 * 120.02938 * 179.72699 * 22 21 19 24 24 C 1.38461 * 119.96846 * 0.57015 * 23 22 21 25 25 F 1.35104 * 120.02250 * 179.68259 * 24 23 22 26 26 C 1.38453 * 119.95334 * 359.70668 * 24 23 22 27 27 C 1.38199 * 119.97380 * 359.97438 * 26 24 23 28 28 C 1.53096 * 109.41214 * 298.84248 * 19 18 17 29 29 H 0.96999 * 119.99758 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47135 * 59.99968 * 10 9 7 31 31 H 1.08997 * 109.47084 * 299.99592 * 10 9 7 32 32 H 0.96998 * 120.00413 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.52573 * 57.01980 * 16 14 13 34 34 H 1.09007 * 109.52168 * 177.20660 * 16 14 13 35 35 H 1.09002 * 109.48158 * 62.37494 * 17 16 14 36 36 H 1.09006 * 109.48167 * 182.40716 * 17 16 14 37 37 H 1.08004 * 119.98221 * 359.97438 * 22 21 19 38 38 H 1.07997 * 120.01749 * 180.25879 * 23 22 21 39 39 H 1.07998 * 120.01377 * 180.02562 * 26 24 23 40 40 H 1.08004 * 119.98819 * 180.02562 * 27 26 24 41 41 H 1.09003 * 109.51917 * 177.51054 * 28 19 18 42 42 H 1.08994 * 109.52137 * 297.63924 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8441 -6.3431 -0.0022 14 6 2.3303 -7.7151 -0.0012 15 1 1.4117 -7.7622 -0.5861 16 6 2.0447 -8.1543 1.4380 17 6 3.3543 -8.1604 2.2309 18 8 4.2921 -9.0291 1.5922 19 6 4.6335 -8.6408 0.2599 20 1 5.0574 -7.6367 0.2713 21 6 5.6443 -9.6071 -0.3017 22 6 5.5260 -10.9596 -0.0411 23 6 6.4492 -11.8473 -0.5604 24 6 7.4996 -11.3802 -1.3322 25 9 8.4064 -12.2463 -1.8350 26 6 7.6203 -10.0248 -1.5878 27 6 6.6922 -9.1397 -1.0730 28 6 3.3752 -8.6540 -0.6121 29 1 -0.4850 0.8401 0.0004 30 1 3.1251 -3.7317 0.8874 31 1 3.1237 -3.7310 -0.8925 32 1 3.8009 -6.1835 -0.0032 33 1 1.3432 -7.4587 1.8988 34 1 1.6161 -9.1565 1.4348 35 1 3.7615 -7.1500 2.2680 36 1 3.1639 -8.5133 3.2445 37 1 4.7095 -11.3230 0.5652 38 1 6.3543 -12.9042 -0.3601 39 1 8.4390 -9.6595 -2.1900 40 1 6.7859 -8.0824 -1.2726 41 1 3.6254 -8.3156 -1.6176 42 1 2.9742 -9.6664 -0.6576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273320571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:50 Heat of formation + Delta-G solvation = -109.297489 kcal Electronic energy + Delta-G solvation = -26090.350068 eV Core-core repulsion = 22075.700602 eV Total energy + Delta-G solvation = -4014.649466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.25136 -40.73928 -39.33177 -38.29064 -35.07677 -32.97447 -32.46093 -31.82561 -31.54706 -29.49959 -28.75157 -25.55099 -25.07222 -24.12190 -23.42961 -21.81817 -21.19705 -19.53048 -18.13784 -17.93666 -17.06439 -16.99693 -16.27056 -16.14235 -15.93984 -15.91467 -15.45532 -15.22165 -14.83362 -14.72021 -14.17124 -14.09791 -13.94662 -13.65561 -13.47520 -13.26211 -13.06638 -12.81826 -12.50054 -12.36900 -12.26558 -12.01694 -11.67443 -11.40088 -11.17802 -11.08058 -11.06426 -10.80692 -10.67534 -9.87083 -9.85751 -9.51286 -9.46692 -9.09827 -9.00936 -8.92899 -8.28412 -6.53952 -6.24684 -3.95740 0.67793 0.83435 2.96396 3.01094 3.07791 3.21147 3.25116 3.28014 3.44005 3.64738 3.86671 4.17357 4.21538 4.32651 4.45173 4.52042 4.64274 4.70328 4.73648 4.86158 4.92326 5.02021 5.08539 5.10497 5.17979 5.32336 5.48227 5.54376 5.55321 5.57615 5.68361 5.70594 5.71725 5.81749 5.84089 5.87243 5.94040 6.07852 6.08553 6.46164 6.54977 6.89098 7.55909 7.59845 8.31741 8.53038 9.20563 10.82624 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.002131 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.272635 B =13134.823130 C =14101.445801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.155 4.155 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.737 5.737 14 C 0.146 3.854 15 H 0.096 0.904 16 C -0.168 4.168 17 C 0.063 3.937 18 O -0.374 6.374 19 C 0.133 3.867 20 H 0.068 0.932 21 C -0.091 4.091 22 C -0.062 4.062 23 C -0.157 4.157 24 C 0.098 3.902 25 F -0.141 7.141 26 C -0.154 4.154 27 C -0.079 4.079 28 C -0.152 4.152 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.394 0.606 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.083 0.917 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.918 -23.127 -0.145 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.392 5.392 14 C 0.040 3.960 15 H 0.114 0.886 16 C -0.207 4.207 17 C -0.013 4.013 18 O -0.294 6.294 19 C 0.075 3.925 20 H 0.086 0.914 21 C -0.091 4.091 22 C -0.080 4.080 23 C -0.175 4.175 24 C 0.079 3.921 25 F -0.120 7.120 26 C -0.173 4.173 27 C -0.097 4.097 28 C -0.190 4.190 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.229 0.771 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.102 0.898 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.840 -23.543 -0.079 26.352 hybrid contribution 2.503 1.443 -0.213 2.897 sum 14.343 -22.100 -0.293 26.348 Atomic orbital electron populations 1.70003 1.05947 1.27605 1.46693 1.24992 0.95036 0.99035 0.94501 0.86226 0.79246 0.81233 0.78807 1.19929 1.20793 1.19934 1.22817 0.94855 0.91653 1.59169 0.90990 1.85398 1.04798 0.96303 1.96726 1.23542 1.06664 0.95433 1.04883 1.20326 0.86559 0.86259 0.74859 1.90705 1.15298 1.85541 1.47283 1.46175 1.09745 1.05302 1.77970 1.20892 0.97816 0.80944 0.96304 0.88616 1.22589 0.98701 1.02947 0.96449 1.22594 0.88229 0.94250 0.96255 1.87934 1.62620 1.52460 1.26339 1.20780 0.92653 0.95864 0.83229 0.91418 1.19641 0.96116 0.94275 0.99058 1.20889 0.98207 0.92008 0.96944 1.21192 0.95149 1.01292 0.99901 1.17787 0.89138 0.87495 0.97711 1.91506 1.65566 1.69326 1.85576 1.21106 1.01536 0.91458 1.03176 1.20867 0.92598 1.00095 0.96171 1.22502 0.95370 1.01176 0.99917 0.92099 0.89282 0.89244 0.77114 0.89681 0.90199 0.92714 0.88492 0.84378 0.84637 0.84510 0.84692 0.89794 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 11 C 0.53 9.27 7.82 -10.98 -0.09 9.19 16 12 O -0.51 -11.01 15.53 5.55 0.09 -10.93 16 13 N -0.74 -8.86 4.40 -53.63 -0.24 -9.09 16 14 C 0.15 1.54 2.82 -67.75 -0.19 1.35 16 15 H 0.10 1.19 7.58 -51.93 -0.39 0.80 16 16 C -0.17 -1.68 5.80 -26.60 -0.15 -1.83 16 17 C 0.06 0.57 6.68 37.20 0.25 0.82 16 18 O -0.37 -3.49 9.72 -35.23 -0.34 -3.83 16 19 C 0.13 1.06 2.67 -27.84 -0.07 0.98 16 20 H 0.07 0.50 6.58 -51.93 -0.34 0.16 16 21 C -0.09 -0.71 4.98 -104.62 -0.52 -1.23 16 22 C -0.06 -0.48 9.35 -39.59 -0.37 -0.85 16 23 C -0.16 -1.19 10.03 -39.51 -0.40 -1.59 16 24 C 0.10 0.83 7.30 -39.42 -0.29 0.54 16 25 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 26 C -0.15 -1.15 10.03 -39.52 -0.40 -1.54 16 27 C -0.08 -0.56 9.67 -39.59 -0.38 -0.95 16 28 C -0.15 -1.21 5.05 -26.59 -0.13 -1.34 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 31 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 32 H 0.39 3.74 7.07 -40.82 -0.29 3.45 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.52 7.75 -51.93 -0.40 0.11 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.14 0.96 7.77 -52.48 -0.41 0.55 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.71 8.04 -52.48 -0.42 0.29 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -33.71 368.92 -9.32 -43.03 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.60 Total: 1.27 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.33 Total: -11.95 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.50 Total: -34.20 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.26 Total: -14.76 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.71 -9.32 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273320571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.265 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds