Wall clock time and date at job start Tue Mar 31 2020 22:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86807 * 120.00153 * 2 1 4 4 H 1.48502 * 109.47018 * 240.00493 * 3 2 1 5 5 H 1.48502 * 109.46712 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46891 * 120.00290 * 3 2 1 7 7 C 1.38795 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00242 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00216 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47015 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00027 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99699 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99839 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.61248 * 34.78300 * 14 13 11 16 16 C 1.53168 * 109.54443 * 274.55666 * 14 13 11 17 17 C 1.53090 * 109.16383 * 297.11286 * 16 14 13 18 18 O 1.42897 * 109.41529 * 302.38908 * 17 16 14 19 19 C 1.42908 * 114.09789 * 61.15937 * 18 17 16 20 20 H 1.09001 * 109.47929 * 58.82316 * 19 18 17 21 21 C 1.50692 * 109.48275 * 178.85990 * 19 18 17 22 22 C 1.38243 * 119.97840 * 39.66554 * 21 19 18 23 23 C 1.38199 * 120.02938 * 179.72699 * 22 21 19 24 24 C 1.38461 * 119.96846 * 0.57015 * 23 22 21 25 25 F 1.35104 * 120.02250 * 179.68259 * 24 23 22 26 26 C 1.38453 * 119.95334 * 359.70668 * 24 23 22 27 27 C 1.38199 * 119.97380 * 359.97438 * 26 24 23 28 28 C 1.53096 * 109.41214 * 298.84248 * 19 18 17 29 29 H 0.96999 * 119.99758 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47135 * 59.99968 * 10 9 7 31 31 H 1.08997 * 109.47084 * 299.99592 * 10 9 7 32 32 H 0.96998 * 120.00413 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.52573 * 57.01980 * 16 14 13 34 34 H 1.09007 * 109.52168 * 177.20660 * 16 14 13 35 35 H 1.09002 * 109.48158 * 62.37494 * 17 16 14 36 36 H 1.09006 * 109.48167 * 182.40716 * 17 16 14 37 37 H 1.08004 * 119.98221 * 359.97438 * 22 21 19 38 38 H 1.07997 * 120.01749 * 180.25879 * 23 22 21 39 39 H 1.07998 * 120.01377 * 180.02562 * 26 24 23 40 40 H 1.08004 * 119.98819 * 180.02562 * 27 26 24 41 41 H 1.09003 * 109.51917 * 177.51054 * 28 19 18 42 42 H 1.08994 * 109.52137 * 297.63924 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8441 -6.3431 -0.0022 14 6 2.3303 -7.7151 -0.0012 15 1 1.4117 -7.7622 -0.5861 16 6 2.0447 -8.1543 1.4380 17 6 3.3543 -8.1604 2.2309 18 8 4.2921 -9.0291 1.5922 19 6 4.6335 -8.6408 0.2599 20 1 5.0574 -7.6367 0.2713 21 6 5.6443 -9.6071 -0.3017 22 6 5.5260 -10.9596 -0.0411 23 6 6.4492 -11.8473 -0.5604 24 6 7.4996 -11.3802 -1.3322 25 9 8.4064 -12.2463 -1.8350 26 6 7.6203 -10.0248 -1.5878 27 6 6.6922 -9.1397 -1.0730 28 6 3.3752 -8.6540 -0.6121 29 1 -0.4850 0.8401 0.0004 30 1 3.1251 -3.7317 0.8874 31 1 3.1237 -3.7310 -0.8925 32 1 3.8009 -6.1835 -0.0032 33 1 1.3432 -7.4587 1.8988 34 1 1.6161 -9.1565 1.4348 35 1 3.7615 -7.1500 2.2680 36 1 3.1639 -8.5133 3.2445 37 1 4.7095 -11.3230 0.5652 38 1 6.3543 -12.9042 -0.3601 39 1 8.4390 -9.6595 -2.1900 40 1 6.7859 -8.0824 -1.2726 41 1 3.6254 -8.3156 -1.6176 42 1 2.9742 -9.6664 -0.6576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273320571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:50 Heat of formation + Delta-G solvation = -130.074899 kcal Electronic energy + Delta-G solvation = -26091.251044 eV Core-core repulsion = 22075.700602 eV Total energy + Delta-G solvation = -4015.550442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.89971 -41.58552 -40.28225 -39.17573 -36.11337 -34.57698 -33.62338 -32.96934 -32.08666 -30.42359 -29.88297 -27.65760 -25.84590 -24.82832 -23.99617 -22.54040 -22.29273 -20.50666 -19.87647 -18.69865 -18.07263 -17.69807 -17.40707 -17.12355 -16.86976 -16.68611 -16.57170 -16.47666 -16.11565 -15.90469 -15.37168 -15.02169 -14.78776 -14.56964 -14.45234 -14.26426 -14.09355 -13.83807 -13.51898 -13.37493 -13.16540 -13.14487 -12.93767 -12.86274 -12.61335 -12.34879 -11.97901 -11.94966 -11.74492 -11.40059 -11.12281 -10.93742 -10.61990 -10.26766 -10.10617 -10.04889 -9.55317 -8.65541 -8.33916 -6.11678 0.09156 0.29604 1.27514 1.44224 1.47483 1.56893 1.61843 2.24649 2.29556 2.48869 2.80870 3.00229 3.29232 3.32386 3.53597 3.73496 3.79014 3.90781 3.92818 3.99550 4.00846 4.08028 4.19018 4.31606 4.37682 4.43564 4.46022 4.52031 4.66313 4.80876 4.84123 4.95665 4.98235 5.05186 5.06087 5.10863 5.17619 5.28116 5.42382 5.47090 5.52241 5.90879 6.20225 6.21305 6.46886 7.07514 7.23875 8.74832 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.002131 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.272635 B =13134.823130 C =14101.445801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.131 4.131 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.710 5.710 14 C 0.144 3.856 15 H 0.076 0.924 16 C -0.164 4.164 17 C 0.067 3.933 18 O -0.380 6.380 19 C 0.133 3.867 20 H 0.079 0.921 21 C -0.097 4.097 22 C -0.068 4.068 23 C -0.160 4.160 24 C 0.079 3.921 25 F -0.151 7.151 26 C -0.157 4.157 27 C -0.080 4.080 28 C -0.140 4.140 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.411 0.589 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.093 0.907 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.495 -23.365 -0.201 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.282 4.282 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.365 5.365 14 C 0.039 3.961 15 H 0.094 0.906 16 C -0.203 4.203 17 C -0.009 4.009 18 O -0.299 6.299 19 C 0.075 3.925 20 H 0.097 0.903 21 C -0.097 4.097 22 C -0.086 4.086 23 C -0.179 4.179 24 C 0.060 3.940 25 F -0.129 7.129 26 C -0.176 4.176 27 C -0.097 4.097 28 C -0.178 4.178 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.249 0.751 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.112 0.888 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.474 -23.823 -0.136 27.876 hybrid contribution 1.748 1.359 -0.196 2.223 sum 16.222 -22.464 -0.332 27.711 Atomic orbital electron populations 1.70174 1.07946 1.28632 1.47989 1.26118 0.95957 1.03306 0.93807 0.85025 0.77816 0.75791 0.79503 1.18640 1.20536 1.18664 1.23168 0.95344 0.92035 1.58846 0.89882 1.85579 1.10512 0.99178 1.97048 1.23386 1.03580 0.94481 1.06781 1.20020 0.86250 0.86549 0.74807 1.90699 1.17331 1.86002 1.49881 1.45896 1.10004 1.04881 1.75673 1.21015 0.98051 0.80214 0.96808 0.90610 1.22534 0.98959 1.02947 0.95847 1.22570 0.87440 0.94264 0.96644 1.87943 1.62437 1.52579 1.26955 1.20849 0.92526 0.96511 0.82596 0.90347 1.19707 0.96385 0.94261 0.99363 1.21008 0.98405 0.92139 0.97066 1.21356 0.94870 1.02078 0.99585 1.18059 0.89498 0.87985 0.98497 1.91480 1.65951 1.69699 1.85816 1.21330 1.02032 0.91116 1.03118 1.21106 0.91994 1.01119 0.95526 1.22439 0.94515 1.00784 1.00109 0.92035 0.87266 0.87192 0.75113 0.92231 0.88859 0.92965 0.87363 0.83808 0.83482 0.83129 0.82628 0.88838 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.35 13.22 21.65 0.29 -55.07 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.55 -30.53 9.50 67.95 0.65 -29.88 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 10 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 11 C 0.54 18.35 7.82 87.66 0.69 19.04 16 12 O -0.56 -24.57 15.53 -3.04 -0.05 -24.62 16 13 N -0.71 -15.76 4.40 -441.96 -1.94 -17.70 16 14 C 0.14 2.83 2.82 45.11 0.13 2.96 16 15 H 0.08 1.86 7.58 -2.39 -0.02 1.84 16 16 C -0.16 -3.10 5.80 30.68 0.18 -2.92 16 17 C 0.07 1.08 6.68 72.01 0.48 1.56 16 18 O -0.38 -6.07 9.72 -148.98 -1.45 -7.52 16 19 C 0.13 1.72 2.67 29.88 0.08 1.80 16 20 H 0.08 0.86 6.58 -2.39 -0.02 0.84 16 21 C -0.10 -1.26 4.98 -19.86 -0.10 -1.36 16 22 C -0.07 -0.91 9.35 22.26 0.21 -0.70 16 23 C -0.16 -2.20 10.03 22.31 0.22 -1.97 16 24 C 0.08 1.22 7.30 22.37 0.16 1.39 16 25 F -0.15 -2.70 17.27 44.97 0.78 -1.92 16 26 C -0.16 -2.02 10.03 22.31 0.22 -1.79 16 27 C -0.08 -0.91 9.67 22.26 0.22 -0.69 16 28 C -0.14 -1.88 5.05 30.69 0.16 -1.72 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 31 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 32 H 0.41 6.50 7.07 -92.71 -0.66 5.85 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.05 0.87 7.75 -2.39 -0.02 0.85 16 36 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.14 1.70 7.77 -2.91 -0.02 1.67 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.16 1.06 8.04 -2.91 -0.02 1.04 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.06 368.92 3.07 -71.99 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.39 Total: 16.80 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.19 Total: -17.57 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.66 Total: -72.77 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.49 Total: -32.13 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -75.06 3.07 -71.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273320571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.083 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds