Wall clock time and date at job start Tue Mar 31 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48495 * 109.47368 * 240.00003 * 3 2 1 5 5 H 1.48503 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47182 * 119.99763 * 3 2 1 7 7 C 1.37880 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99867 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46649 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46965 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46932 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00068 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00310 * 180.02562 * 13 12 11 16 16 N 1.46502 * 109.47190 * 180.02562 * 15 13 12 17 17 C 1.34770 * 119.99971 * 179.97438 * 16 15 13 18 18 O 1.21587 * 120.00369 * 0.02562 * 17 16 15 19 19 N 1.34782 * 120.00258 * 179.97438 * 17 16 15 20 20 C 1.39942 * 120.00314 * 185.31949 * 19 17 16 21 21 C 1.38895 * 120.05977 * 213.30728 * 20 19 17 22 22 C 1.38106 * 119.95254 * 180.02562 * 21 20 19 23 23 C 1.38279 * 120.08272 * 359.97438 * 22 21 20 24 24 C 1.38379 * 120.12773 * 0.02562 * 23 22 21 25 25 Cl 1.73600 * 119.97766 * 180.02562 * 24 23 22 26 26 C 1.38254 * 120.04266 * 0.02562 * 24 23 22 27 27 H 0.97000 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47123 * 60.00262 * 9 7 2 29 29 H 1.08998 * 109.47356 * 299.99535 * 9 7 2 30 30 H 1.09000 * 109.47931 * 59.99898 * 10 9 7 31 31 H 1.09003 * 109.46944 * 299.99794 * 10 9 7 32 32 H 1.08995 * 109.47059 * 59.99670 * 11 10 9 33 33 H 1.09003 * 109.47028 * 299.99628 * 11 10 9 34 34 H 0.96999 * 120.00863 * 0.02562 * 12 11 10 35 35 H 1.08995 * 109.47254 * 60.00265 * 15 13 12 36 36 H 1.09003 * 109.46983 * 300.00131 * 15 13 12 37 37 H 0.97005 * 120.00053 * 359.97438 * 16 15 13 38 38 H 0.96998 * 119.99314 * 5.32126 * 19 17 16 39 39 H 1.07998 * 120.02454 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.95579 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.93524 * 179.97438 * 23 22 21 42 42 H 1.08006 * 120.03910 * 180.27272 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0033 12 7 2.4323 -6.1005 -0.0037 13 6 1.9831 -7.3713 -0.0047 14 8 0.7907 -7.5929 -0.0058 15 6 2.9624 -8.5167 -0.0045 16 7 2.2299 -9.7854 -0.0064 17 6 2.9038 -10.9526 -0.0071 18 8 4.1196 -10.9526 -0.0057 19 7 2.2299 -12.1199 -0.0083 20 6 2.9251 -13.3293 0.1034 21 6 2.4558 -14.4640 -0.5457 22 6 3.1433 -15.6565 -0.4336 23 6 4.2985 -15.7221 0.3236 24 6 4.7691 -14.5936 0.9717 25 17 6.2201 -14.6802 1.9207 26 6 4.0844 -13.3974 0.8639 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8880 30 1 2.8713 -3.6048 0.8890 31 1 2.8726 -3.6038 -0.8910 32 1 0.8546 -5.0441 -0.8939 33 1 0.8527 -5.0455 0.8860 34 1 3.3860 -5.9234 -0.0024 35 1 3.5883 -8.4595 0.8860 36 1 3.5898 -8.4585 -0.8940 37 1 1.2599 -9.7855 -0.0071 38 1 1.2631 -12.1216 -0.0865 39 1 1.5534 -14.4140 -1.1370 40 1 2.7786 -16.5388 -0.9386 41 1 4.8340 -16.6559 0.4099 42 1 4.4542 -12.5156 1.3662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294644804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:46 Heat of formation + Delta-G solvation = -57.215816 kcal Electronic energy + Delta-G solvation = -24700.873797 eV Core-core repulsion = 20706.359017 eV Total energy + Delta-G solvation = -3994.514779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.17213 -39.88226 -39.00987 -36.88010 -35.75256 -35.14447 -34.73933 -33.43402 -31.45158 -31.18885 -30.24783 -28.23143 -26.28217 -23.69385 -23.17678 -22.76554 -21.25180 -20.92726 -20.26716 -19.12983 -18.43547 -16.94763 -16.65246 -16.48387 -16.39048 -16.00879 -15.76723 -15.35287 -15.10043 -14.75959 -14.54522 -14.37102 -14.33566 -13.95950 -13.84597 -13.29746 -12.94063 -12.44377 -12.33551 -12.22754 -11.92623 -11.91615 -11.79712 -11.34442 -10.92496 -10.81932 -10.80552 -10.68150 -10.58684 -10.16737 -9.94454 -9.60294 -9.47995 -9.21265 -9.18991 -8.99116 -8.60083 -8.41299 -6.06103 -4.09550 0.67583 0.83276 1.71900 2.03279 2.44947 2.63997 3.14534 3.26333 3.29494 3.34508 3.36464 3.72758 4.37651 4.40605 4.54211 4.59940 4.65759 4.89445 4.94544 5.04361 5.05034 5.28989 5.29787 5.57126 5.65998 5.66280 5.78931 5.84010 5.87538 5.93239 6.04912 6.26818 6.39264 6.43926 6.49855 6.70135 6.91289 7.39464 7.47064 7.57358 7.69171 7.91791 8.02554 8.07689 8.32841 8.96770 9.54995 11.05042 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029533 B = 0.001399 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.865406 B =20004.599197 C =20789.407968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.503 3.497 14 O -0.544 6.544 15 C 0.117 3.883 16 N -0.725 5.725 17 C 0.707 3.293 18 O -0.571 6.571 19 N -0.685 5.685 20 C 0.184 3.816 21 C -0.145 4.145 22 C -0.086 4.086 23 C -0.132 4.132 24 C -0.014 4.014 25 Cl -0.067 7.067 26 C -0.115 4.115 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.411 0.589 38 H 0.412 0.588 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.407 -33.479 0.202 34.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.368 5.368 13 C 0.288 3.712 14 O -0.422 6.422 15 C -0.011 4.011 16 N -0.384 5.384 17 C 0.407 3.593 18 O -0.447 6.447 19 N -0.332 5.332 20 C 0.088 3.912 21 C -0.166 4.166 22 C -0.105 4.105 23 C -0.151 4.151 24 C -0.041 4.041 25 Cl -0.038 7.038 26 C -0.136 4.136 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.249 0.751 38 H 0.248 0.752 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.595 -33.366 0.300 34.013 hybrid contribution 0.068 1.176 -0.004 1.178 sum 6.664 -32.190 0.296 32.874 Atomic orbital electron populations 1.69951 1.06069 1.26857 1.50357 1.25025 0.94863 0.99323 0.95179 0.86631 0.79559 0.83027 0.78616 1.20232 1.21250 1.20225 1.21160 0.92985 0.90926 1.51248 0.92652 1.19024 0.93825 0.90839 0.97671 1.21910 0.99834 0.93177 1.01074 1.21722 0.91779 0.84906 1.02219 1.46121 1.11325 1.05572 1.73763 1.20409 0.89444 0.84504 0.76819 1.90698 1.16628 1.84532 1.50346 1.20981 0.93727 0.81199 1.05170 1.44715 1.11059 1.03464 1.79113 1.15756 0.85444 0.80139 0.77949 1.90984 1.11122 1.86147 1.56465 1.42547 1.10498 1.03252 1.76944 1.17277 0.93489 0.84775 0.95637 1.20992 1.02422 0.92359 1.00870 1.20880 0.94194 0.97539 0.97875 1.21042 0.97562 0.97688 0.98840 1.20725 0.90457 0.95004 0.97919 1.98383 1.35919 1.98562 1.70908 1.21074 0.95569 0.97674 0.99302 0.92842 0.96257 0.96262 0.92560 0.92572 0.91506 0.91499 0.76288 0.88105 0.88128 0.75133 0.75177 0.84949 0.84586 0.84856 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 11 C 0.12 1.86 5.67 -4.04 -0.02 1.83 16 12 N -0.72 -8.79 5.56 -60.29 -0.33 -9.12 16 13 C 0.50 6.15 7.90 -10.98 -0.09 6.06 16 14 O -0.54 -8.44 15.67 5.56 0.09 -8.36 16 15 C 0.12 1.09 6.15 -5.19 -0.03 1.06 16 16 N -0.73 -6.69 5.53 -66.41 -0.37 -7.06 16 17 C 0.71 7.22 8.30 -86.92 -0.72 6.49 16 18 O -0.57 -7.67 14.02 5.29 0.07 -7.60 16 19 N -0.68 -5.14 5.35 -14.23 -0.08 -5.22 16 20 C 0.18 1.54 6.28 -83.70 -0.53 1.01 16 21 C -0.15 -0.89 9.96 -39.39 -0.39 -1.28 16 22 C -0.09 -0.48 10.04 -39.61 -0.40 -0.88 16 23 C -0.13 -0.89 9.83 -39.51 -0.39 -1.28 16 24 C -0.01 -0.12 6.32 -39.52 -0.25 -0.37 16 25 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 26 C -0.12 -1.14 8.44 -39.36 -0.33 -1.47 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.41 3.51 7.46 -40.82 -0.30 3.20 16 38 H 0.41 1.82 8.83 -40.82 -0.36 1.45 16 39 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.15 1.71 6.40 -52.48 -0.34 1.37 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -34.00 379.46 -10.06 -44.06 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.54 Total: 3.00 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.84 Total: -3.88 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.04 Total: -46.99 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.16 Total: -15.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.00 -10.06 -44.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294644804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.156 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds