Wall clock time and date at job start Tue Mar 31 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48495 * 109.47368 * 240.00003 * 3 2 1 5 5 H 1.48503 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47182 * 119.99763 * 3 2 1 7 7 C 1.37880 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99867 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46649 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46965 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46932 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00068 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00310 * 180.02562 * 13 12 11 16 16 N 1.46502 * 109.47190 * 180.02562 * 15 13 12 17 17 C 1.34770 * 119.99971 * 179.97438 * 16 15 13 18 18 O 1.21587 * 120.00369 * 0.02562 * 17 16 15 19 19 N 1.34782 * 120.00258 * 179.97438 * 17 16 15 20 20 C 1.39942 * 120.00314 * 185.31949 * 19 17 16 21 21 C 1.38895 * 120.05977 * 213.30728 * 20 19 17 22 22 C 1.38106 * 119.95254 * 180.02562 * 21 20 19 23 23 C 1.38279 * 120.08272 * 359.97438 * 22 21 20 24 24 C 1.38379 * 120.12773 * 0.02562 * 23 22 21 25 25 Cl 1.73600 * 119.97766 * 180.02562 * 24 23 22 26 26 C 1.38254 * 120.04266 * 0.02562 * 24 23 22 27 27 H 0.97000 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47123 * 60.00262 * 9 7 2 29 29 H 1.08998 * 109.47356 * 299.99535 * 9 7 2 30 30 H 1.09000 * 109.47931 * 59.99898 * 10 9 7 31 31 H 1.09003 * 109.46944 * 299.99794 * 10 9 7 32 32 H 1.08995 * 109.47059 * 59.99670 * 11 10 9 33 33 H 1.09003 * 109.47028 * 299.99628 * 11 10 9 34 34 H 0.96999 * 120.00863 * 0.02562 * 12 11 10 35 35 H 1.08995 * 109.47254 * 60.00265 * 15 13 12 36 36 H 1.09003 * 109.46983 * 300.00131 * 15 13 12 37 37 H 0.97005 * 120.00053 * 359.97438 * 16 15 13 38 38 H 0.96998 * 119.99314 * 5.32126 * 19 17 16 39 39 H 1.07998 * 120.02454 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.95579 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.93524 * 179.97438 * 23 22 21 42 42 H 1.08006 * 120.03910 * 180.27272 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0033 12 7 2.4323 -6.1005 -0.0037 13 6 1.9831 -7.3713 -0.0047 14 8 0.7907 -7.5929 -0.0058 15 6 2.9624 -8.5167 -0.0045 16 7 2.2299 -9.7854 -0.0064 17 6 2.9038 -10.9526 -0.0071 18 8 4.1196 -10.9526 -0.0057 19 7 2.2299 -12.1199 -0.0083 20 6 2.9251 -13.3293 0.1034 21 6 2.4558 -14.4640 -0.5457 22 6 3.1433 -15.6565 -0.4336 23 6 4.2985 -15.7221 0.3236 24 6 4.7691 -14.5936 0.9717 25 17 6.2201 -14.6802 1.9207 26 6 4.0844 -13.3974 0.8639 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8880 30 1 2.8713 -3.6048 0.8890 31 1 2.8726 -3.6038 -0.8910 32 1 0.8546 -5.0441 -0.8939 33 1 0.8527 -5.0455 0.8860 34 1 3.3860 -5.9234 -0.0024 35 1 3.5883 -8.4595 0.8860 36 1 3.5898 -8.4585 -0.8940 37 1 1.2599 -9.7855 -0.0071 38 1 1.2631 -12.1216 -0.0865 39 1 1.5534 -14.4140 -1.1370 40 1 2.7786 -16.5388 -0.9386 41 1 4.8340 -16.6559 0.4099 42 1 4.4542 -12.5156 1.3662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294644804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:45 Heat of formation + Delta-G solvation = -81.126003 kcal Electronic energy + Delta-G solvation = -24701.910620 eV Core-core repulsion = 20706.359017 eV Total energy + Delta-G solvation = -3995.551603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89794 -40.83933 -39.71329 -37.52540 -37.08121 -35.81296 -35.63606 -35.21649 -33.12292 -31.73923 -30.94858 -29.38555 -27.74354 -24.94812 -24.10447 -23.49004 -22.32825 -21.96652 -21.51428 -19.92084 -19.09437 -18.53835 -17.57442 -17.54122 -17.25443 -16.98603 -16.63465 -16.50055 -16.21509 -15.94291 -15.54491 -15.39320 -15.27612 -14.56066 -14.51424 -14.38607 -14.14722 -13.94984 -13.76225 -13.36442 -13.00968 -12.79557 -12.71418 -12.55667 -12.47427 -12.41273 -12.00722 -11.66459 -11.63704 -11.52044 -11.29636 -11.26911 -10.99794 -10.54185 -10.39818 -10.13561 -9.79191 -9.17851 -8.19258 -6.30462 0.12553 0.26888 1.09857 1.31665 1.42431 1.44746 1.45517 1.52619 1.89539 2.17119 2.42816 2.70636 3.06203 3.14707 3.59803 3.90049 4.10878 4.15286 4.16634 4.21105 4.31328 4.32944 4.39562 4.44441 4.56199 4.75771 4.95450 4.95851 5.11654 5.12632 5.18194 5.25908 5.33831 5.37258 5.39174 5.52779 5.71924 5.78371 5.84987 5.88129 6.22685 6.44480 6.78182 6.87050 7.09739 7.29529 7.39202 8.92342 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029533 B = 0.001399 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.865406 B =20004.599197 C =20789.407968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.131 3.869 12 N -0.708 5.708 13 C 0.508 3.492 14 O -0.578 6.578 15 C 0.126 3.874 16 N -0.722 5.722 17 C 0.706 3.294 18 O -0.606 6.606 19 N -0.672 5.672 20 C 0.167 3.833 21 C -0.138 4.138 22 C -0.079 4.079 23 C -0.133 4.133 24 C -0.030 4.030 25 Cl -0.077 7.077 26 C -0.138 4.138 27 H 0.263 0.737 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.419 0.581 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.415 0.585 38 H 0.427 0.573 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.151 0.849 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 -34.950 -0.576 35.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.142 4.142 11 C 0.007 3.993 12 N -0.360 5.360 13 C 0.295 3.705 14 O -0.458 6.458 15 C -0.002 4.002 16 N -0.380 5.380 17 C 0.406 3.594 18 O -0.485 6.485 19 N -0.321 5.321 20 C 0.071 3.929 21 C -0.158 4.158 22 C -0.097 4.097 23 C -0.152 4.152 24 C -0.057 4.057 25 Cl -0.049 7.049 26 C -0.159 4.159 27 H 0.071 0.929 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.257 0.743 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.253 0.747 38 H 0.266 0.734 39 H 0.179 0.821 40 H 0.189 0.811 41 H 0.169 0.831 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.489 -34.863 -0.477 35.661 hybrid contribution -0.255 1.549 0.226 1.586 sum 7.234 -33.314 -0.252 34.091 Atomic orbital electron populations 1.70096 1.07864 1.27805 1.51612 1.25989 0.95725 1.03434 0.94792 0.85499 0.78215 0.78110 0.79209 1.19113 1.21200 1.19127 1.21673 0.93764 0.92125 1.50567 0.91596 1.18946 0.94481 0.92921 0.95154 1.21615 0.98474 0.91878 1.02240 1.21267 0.91828 0.85173 1.01061 1.45857 1.11634 1.04780 1.73685 1.20817 0.89356 0.84800 0.75538 1.90690 1.18330 1.85002 1.51760 1.20953 0.92821 0.79918 1.06495 1.44664 1.11206 1.03244 1.78884 1.15858 0.85063 0.80768 0.77697 1.90965 1.12712 1.86682 1.58118 1.42388 1.11164 1.02389 1.76171 1.17491 0.93499 0.85628 0.96284 1.21348 1.03033 0.91505 0.99919 1.21325 0.93149 0.98473 0.96790 1.21353 0.98054 0.97578 0.98205 1.20884 0.90451 0.95573 0.98797 1.98370 1.36587 1.98578 1.71317 1.20982 0.96942 0.97337 1.00677 0.92850 0.98836 0.98873 0.91325 0.91298 0.92774 0.92820 0.74342 0.86764 0.86698 0.74654 0.73407 0.82103 0.81138 0.83100 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.76 5.27 30.60 0.16 -3.60 16 11 C 0.13 4.15 5.67 86.38 0.49 4.64 16 12 N -0.71 -16.37 5.56 -463.06 -2.57 -18.94 16 13 C 0.51 11.85 7.90 87.66 0.69 12.54 16 14 O -0.58 -17.68 15.67 -3.03 -0.05 -17.72 16 15 C 0.13 2.17 6.15 85.63 0.53 2.69 16 16 N -0.72 -12.61 5.53 -482.30 -2.67 -15.28 16 17 C 0.71 14.00 8.30 179.05 1.49 15.49 16 18 O -0.61 -16.33 14.02 -3.99 -0.06 -16.38 16 19 N -0.67 -9.41 5.35 -317.19 -1.70 -11.11 16 20 C 0.17 2.61 6.28 38.14 0.24 2.85 16 21 C -0.14 -1.31 9.96 22.40 0.22 -1.09 16 22 C -0.08 -0.63 10.04 22.25 0.22 -0.40 16 23 C -0.13 -1.56 9.83 22.31 0.22 -1.34 16 24 C -0.03 -0.52 6.32 22.31 0.14 -0.38 16 25 Cl -0.08 -1.40 28.95 -2.72 -0.08 -1.48 16 26 C -0.14 -2.78 8.44 22.41 0.19 -2.59 16 27 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.42 7.03 8.47 -92.71 -0.79 6.24 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.42 6.70 7.46 -92.70 -0.69 6.01 16 38 H 0.43 3.09 8.83 -92.71 -0.82 2.27 16 39 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 40 H 0.17 0.19 8.06 -2.91 -0.02 0.16 16 41 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.12 3.05 6.40 -2.91 -0.02 3.03 16 Total: -1.00 -75.49 379.46 -0.58 -76.08 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -1.21 Total: 14.46 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.44 Total: 1.00 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -6.65 Total: -101.17 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.10 Total: -34.11 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -75.49 -0.58 -76.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294644804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.050 kcal (2) G-P(sol) polarization free energy of solvation -75.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds