Wall clock time and date at job start Tue Mar 31 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48503 * 109.47389 * 239.99911 * 3 2 1 5 5 H 1.48506 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46837 * 120.00007 * 3 2 1 7 7 C 1.37872 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00294 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.30116 * 119.99862 * 122.13962 * 10 9 7 12 12 O 1.35107 * 119.99667 * 187.06087 * 11 10 9 13 13 N 1.37444 * 120.00295 * 7.06724 * 11 10 9 14 14 C 1.40151 * 120.00339 * 174.42419 * 13 11 10 15 15 C 1.38665 * 120.08840 * 330.83992 * 14 13 11 16 16 C 1.38335 * 119.99140 * 180.02562 * 15 14 13 17 17 Cl 1.73601 * 119.91980 * 179.97438 * 16 15 14 18 18 C 1.38375 * 120.16932 * 0.02562 * 16 15 14 19 19 C 1.38247 * 120.17729 * 359.97438 * 18 16 15 20 20 C 1.38676 * 120.00976 * 359.72116 * 19 18 16 21 21 N 1.40013 * 120.08815 * 180.30230 * 20 19 18 22 22 C 1.47018 * 111.00040 * 63.91225 * 21 20 19 23 23 C 1.53101 * 109.25689 * 177.60812 * 22 21 20 24 24 O 1.43015 * 109.25595 * 56.84826 * 23 22 21 25 25 C 1.43010 * 113.74105 * 301.32853 * 24 23 22 26 26 C 1.47008 * 110.99875 * 300.27846 * 21 20 19 27 27 H 0.97000 * 120.00039 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46868 * 60.00100 * 9 7 2 29 29 H 1.08997 * 109.47093 * 300.00340 * 9 7 2 30 30 H 0.96701 * 114.00494 * 0.02562 * 12 11 10 31 31 H 0.97000 * 120.00020 * 354.43077 * 13 11 10 32 32 H 1.07998 * 120.00047 * 0.02562 * 15 14 13 33 33 H 1.08002 * 119.90998 * 179.97438 * 18 16 15 34 34 H 1.08001 * 119.99293 * 180.02562 * 19 18 16 35 35 H 1.08999 * 109.50470 * 297.54748 * 22 21 20 36 36 H 1.08996 * 109.50596 * 57.67429 * 22 21 20 37 37 H 1.08993 * 109.50662 * 296.91506 * 23 22 21 38 38 H 1.08999 * 109.50374 * 176.78447 * 23 22 21 39 39 H 1.08997 * 109.50837 * 298.73668 * 25 24 23 40 40 H 1.09003 * 109.54582 * 178.62740 * 25 24 23 41 41 H 1.09004 * 109.50718 * 302.32565 * 26 21 20 42 42 H 1.09001 * 109.51175 * 62.45492 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.1703 -4.4966 0.9536 12 8 3.1340 -5.4401 1.0339 13 7 1.1551 -4.4708 1.8798 14 6 1.0531 -5.4899 2.8365 15 6 1.5128 -6.7653 2.5453 16 6 1.4107 -7.7698 3.4910 17 17 1.9861 -9.3661 3.1242 18 6 0.8501 -7.5058 4.7282 19 6 0.3896 -6.2367 5.0260 20 6 0.4940 -5.2227 4.0858 21 7 0.0339 -3.9353 4.3879 22 6 0.8062 -3.3451 5.4909 23 6 0.3109 -1.9194 5.7479 24 8 -1.0918 -1.9501 6.0248 25 6 -1.8744 -2.5182 4.9712 26 6 -1.4012 -3.9499 4.7063 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5566 -0.8904 29 1 0.6248 -2.5570 0.8896 30 1 3.8044 -5.3776 0.3398 31 1 0.5090 -3.7473 1.8712 32 1 1.9504 -6.9744 1.5804 33 1 0.7721 -8.2932 5.4632 34 1 -0.0471 -6.0338 5.9927 35 1 0.6718 -3.9449 6.3910 36 1 1.8625 -3.3207 5.2234 37 1 0.4944 -1.3058 4.8659 38 1 0.8414 -1.4982 6.6019 39 1 -1.7544 -1.9220 4.0666 40 1 -2.9247 -2.5300 5.2626 41 1 -1.9563 -4.3671 3.8660 42 1 -1.5710 -4.5594 5.5939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331150856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:44 Heat of formation + Delta-G solvation = -16.746275 kcal Electronic energy + Delta-G solvation = -27744.035144 eV Core-core repulsion = 23751.275255 eV Total energy + Delta-G solvation = -3992.759888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66449 -39.18528 -38.18227 -36.70462 -35.38088 -35.22348 -33.63200 -32.09783 -31.22897 -30.15271 -29.03975 -27.02255 -26.25745 -24.04134 -23.60434 -22.73325 -21.85702 -20.62341 -20.11988 -18.14170 -17.20269 -16.87166 -16.34836 -16.14292 -15.90979 -15.52357 -15.38157 -15.10963 -15.01493 -14.57775 -14.54913 -14.38805 -13.75005 -13.60890 -13.40750 -12.92517 -12.50328 -12.38868 -12.29745 -12.01981 -11.88876 -11.74854 -11.43786 -11.35816 -11.00940 -10.90805 -10.79736 -10.63649 -10.52433 -10.10329 -9.74886 -9.71291 -8.94523 -8.73270 -8.61173 -8.42859 -8.27559 -7.24389 -6.07960 -4.10888 1.02417 1.27698 2.06575 3.11690 3.22637 3.30360 3.34139 3.38667 3.55437 3.73243 3.86560 4.40804 4.53704 4.73103 4.84055 4.89234 5.03402 5.07137 5.16270 5.16807 5.25783 5.30150 5.43105 5.51145 5.61419 5.69266 5.73571 5.79371 5.91629 5.93310 5.96714 6.17515 6.23480 6.56142 6.73128 6.95330 7.11648 7.14823 7.31777 7.41884 7.53595 7.86304 8.14470 8.27064 8.90193 9.11196 9.54534 11.00769 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.004331 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.325886 B = 6463.685199 C = 8792.464003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.203 3.797 10 N -0.607 5.607 11 C 0.519 3.481 12 O -0.484 6.484 13 N -0.659 5.659 14 C 0.222 3.778 15 C -0.137 4.137 16 C -0.005 4.005 17 Cl -0.075 7.075 18 C -0.142 4.142 19 C -0.107 4.107 20 C 0.041 3.959 21 N -0.494 5.494 22 C 0.029 3.971 23 C 0.061 3.939 24 O -0.387 6.387 25 C 0.061 3.939 26 C 0.023 3.977 27 H 0.263 0.737 28 H 0.035 0.965 29 H -0.004 1.004 30 H 0.415 0.585 31 H 0.438 0.562 32 H 0.153 0.847 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -13.705 12.452 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.077 3.923 10 N -0.349 5.349 11 C 0.205 3.795 12 O -0.281 6.281 13 N -0.304 5.304 14 C 0.120 3.880 15 C -0.159 4.159 16 C -0.032 4.032 17 Cl -0.046 7.046 18 C -0.163 4.163 19 C -0.128 4.128 20 C -0.057 4.057 21 N -0.216 5.216 22 C -0.098 4.098 23 C -0.016 4.016 24 O -0.305 6.305 25 C -0.016 4.016 26 C -0.104 4.104 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.014 0.986 30 H 0.271 0.729 31 H 0.285 0.715 32 H 0.170 0.830 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.958 -13.355 11.834 17.870 hybrid contribution 0.045 0.559 0.557 0.790 sum -0.913 -12.796 12.391 17.836 Atomic orbital electron populations 1.69931 1.05957 1.27040 1.50644 1.24967 0.94928 0.99234 0.95249 0.86525 0.79452 0.82520 0.78719 1.20119 1.21227 1.20274 1.21054 0.93523 0.89425 1.50403 0.92100 1.19394 0.90108 0.86953 0.95869 1.72561 1.34530 1.07787 1.19990 1.19955 0.84697 0.89120 0.85777 1.84641 1.37140 1.50357 1.56001 1.42907 1.29880 1.27096 1.30486 1.17564 0.95054 0.87866 0.87562 1.20973 1.04205 0.89857 1.00884 1.20645 1.00969 0.86268 0.95332 1.98358 1.87627 1.23737 1.94848 1.20704 1.02408 0.97360 0.95809 1.21277 0.99720 0.92573 0.99185 1.18518 1.05035 0.89522 0.92577 1.59646 1.03227 1.17895 1.40827 1.22814 0.98995 0.96260 0.91683 1.22714 0.81558 0.95103 1.02230 1.87946 1.17942 1.82427 1.42195 1.22706 0.95106 0.92077 0.91721 1.22885 0.88064 0.98504 1.00904 0.92754 0.94680 0.98611 0.72881 0.71451 0.82999 0.85317 0.85471 0.93677 0.89363 0.91298 0.88388 0.91302 0.88384 0.89423 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.30 9.39 -34.44 -0.32 -14.63 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.20 5.29 6.06 -5.19 -0.03 5.26 16 10 N -0.61 -13.63 10.48 -63.67 -0.67 -14.29 16 11 C 0.52 9.73 8.46 -88.45 -0.75 8.99 16 12 O -0.48 -7.24 10.25 -17.02 -0.17 -7.41 16 13 N -0.66 -11.67 5.20 -11.66 -0.06 -11.73 16 14 C 0.22 3.38 6.41 -83.44 -0.53 2.85 16 15 C -0.14 -1.91 8.41 -39.39 -0.33 -2.24 16 16 C 0.00 -0.06 6.32 -39.50 -0.25 -0.31 16 17 Cl -0.07 -0.84 28.95 -51.86 -1.50 -2.34 16 18 C -0.14 -1.57 9.82 -39.53 -0.39 -1.96 16 19 C -0.11 -1.22 8.63 -39.42 -0.34 -1.56 16 20 C 0.04 0.56 4.76 -83.51 -0.40 0.16 16 21 N -0.49 -6.70 4.10 -170.60 -0.70 -7.41 16 22 C 0.03 0.36 5.41 -3.71 -0.02 0.34 16 23 C 0.06 0.78 7.01 37.21 0.26 1.04 16 24 O -0.39 -5.28 10.83 -35.23 -0.38 -5.66 16 25 C 0.06 0.75 7.01 37.21 0.26 1.01 16 26 C 0.02 0.28 5.36 -3.71 -0.02 0.26 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.00 -0.09 5.39 -51.93 -0.28 -0.37 16 30 H 0.41 4.80 8.97 45.56 0.41 5.21 16 31 H 0.44 8.49 5.73 -40.82 -0.23 8.26 16 32 H 0.15 2.17 5.98 -52.49 -0.31 1.86 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.23 7.04 -52.49 -0.37 0.87 16 35 H 0.05 0.51 7.43 -51.93 -0.39 0.12 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.49 7.21 -51.93 -0.37 0.12 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -30.88 361.37 -9.76 -40.64 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.48 Total: 10.59 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.96 Total: 0.73 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.69 Total: -58.47 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.56 Total: -13.07 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.88 -9.76 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331150856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.894 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds