Wall clock time and date at job start Tue Mar 31 2020 22:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48503 * 109.47389 * 239.99911 * 3 2 1 5 5 H 1.48506 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46837 * 120.00007 * 3 2 1 7 7 C 1.37872 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00294 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.30116 * 119.99862 * 122.13962 * 10 9 7 12 12 O 1.35107 * 119.99667 * 187.06087 * 11 10 9 13 13 N 1.37444 * 120.00295 * 7.06724 * 11 10 9 14 14 C 1.40151 * 120.00339 * 174.42419 * 13 11 10 15 15 C 1.38665 * 120.08840 * 330.83992 * 14 13 11 16 16 C 1.38335 * 119.99140 * 180.02562 * 15 14 13 17 17 Cl 1.73601 * 119.91980 * 179.97438 * 16 15 14 18 18 C 1.38375 * 120.16932 * 0.02562 * 16 15 14 19 19 C 1.38247 * 120.17729 * 359.97438 * 18 16 15 20 20 C 1.38676 * 120.00976 * 359.72116 * 19 18 16 21 21 N 1.40013 * 120.08815 * 180.30230 * 20 19 18 22 22 C 1.47018 * 111.00040 * 63.91225 * 21 20 19 23 23 C 1.53101 * 109.25689 * 177.60812 * 22 21 20 24 24 O 1.43015 * 109.25595 * 56.84826 * 23 22 21 25 25 C 1.43010 * 113.74105 * 301.32853 * 24 23 22 26 26 C 1.47008 * 110.99875 * 300.27846 * 21 20 19 27 27 H 0.97000 * 120.00039 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46868 * 60.00100 * 9 7 2 29 29 H 1.08997 * 109.47093 * 300.00340 * 9 7 2 30 30 H 0.96701 * 114.00494 * 0.02562 * 12 11 10 31 31 H 0.97000 * 120.00020 * 354.43077 * 13 11 10 32 32 H 1.07998 * 120.00047 * 0.02562 * 15 14 13 33 33 H 1.08002 * 119.90998 * 179.97438 * 18 16 15 34 34 H 1.08001 * 119.99293 * 180.02562 * 19 18 16 35 35 H 1.08999 * 109.50470 * 297.54748 * 22 21 20 36 36 H 1.08996 * 109.50596 * 57.67429 * 22 21 20 37 37 H 1.08993 * 109.50662 * 296.91506 * 23 22 21 38 38 H 1.08999 * 109.50374 * 176.78447 * 23 22 21 39 39 H 1.08997 * 109.50837 * 298.73668 * 25 24 23 40 40 H 1.09003 * 109.54582 * 178.62740 * 25 24 23 41 41 H 1.09004 * 109.50718 * 302.32565 * 26 21 20 42 42 H 1.09001 * 109.51175 * 62.45492 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.1703 -4.4966 0.9536 12 8 3.1340 -5.4401 1.0339 13 7 1.1551 -4.4708 1.8798 14 6 1.0531 -5.4899 2.8365 15 6 1.5128 -6.7653 2.5453 16 6 1.4107 -7.7698 3.4910 17 17 1.9861 -9.3661 3.1242 18 6 0.8501 -7.5058 4.7282 19 6 0.3896 -6.2367 5.0260 20 6 0.4940 -5.2227 4.0858 21 7 0.0339 -3.9353 4.3879 22 6 0.8062 -3.3451 5.4909 23 6 0.3109 -1.9194 5.7479 24 8 -1.0918 -1.9501 6.0248 25 6 -1.8744 -2.5182 4.9712 26 6 -1.4012 -3.9499 4.7063 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5566 -0.8904 29 1 0.6248 -2.5570 0.8896 30 1 3.8044 -5.3776 0.3398 31 1 0.5090 -3.7473 1.8712 32 1 1.9504 -6.9744 1.5804 33 1 0.7721 -8.2932 5.4632 34 1 -0.0471 -6.0338 5.9927 35 1 0.6718 -3.9449 6.3910 36 1 1.8625 -3.3207 5.2234 37 1 0.4944 -1.3058 4.8659 38 1 0.8414 -1.4982 6.6019 39 1 -1.7544 -1.9220 4.0666 40 1 -2.9247 -2.5300 5.2626 41 1 -1.9563 -4.3671 3.8660 42 1 -1.5710 -4.5594 5.5939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331150856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:43 Heat of formation + Delta-G solvation = -41.147093 kcal Electronic energy + Delta-G solvation = -27745.093243 eV Core-core repulsion = 23751.275255 eV Total energy + Delta-G solvation = -3993.817987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75178 -40.41003 -39.35586 -37.67354 -36.77054 -36.30553 -35.33321 -33.91421 -32.21416 -31.17465 -30.31064 -28.88797 -27.31547 -25.21820 -25.03380 -24.17124 -22.92235 -22.01188 -21.22116 -19.32809 -18.52116 -18.29068 -18.12066 -17.40969 -17.17468 -16.57594 -16.54270 -16.31681 -16.11642 -16.05477 -15.88234 -15.59282 -14.89707 -14.61409 -14.48598 -14.36182 -14.27711 -13.88500 -13.44997 -13.33222 -13.06827 -12.85718 -12.71502 -12.68402 -12.45946 -12.37471 -12.15205 -11.90887 -11.81966 -11.62782 -11.55340 -10.80433 -10.77282 -10.24336 -9.95955 -9.68634 -9.56608 -8.71049 -8.18837 -6.33099 0.01000 0.23809 1.10307 1.38530 1.41577 1.49438 1.72178 1.84952 2.40291 2.53040 2.62067 2.88704 3.09205 3.20910 3.78306 3.86446 3.91342 4.09793 4.11642 4.14982 4.19555 4.19819 4.32072 4.43761 4.56024 4.65859 4.69458 4.76299 4.76909 4.90635 4.95342 5.03162 5.20887 5.23839 5.31663 5.53979 5.67278 5.77002 5.91691 5.94359 6.09546 6.18136 6.30848 6.60202 6.83273 7.31818 7.53944 8.87000 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.004331 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.325886 B = 6463.685199 C = 8792.464003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.221 3.779 10 N -0.648 5.648 11 C 0.545 3.455 12 O -0.466 6.466 13 N -0.665 5.665 14 C 0.190 3.810 15 C -0.140 4.140 16 C -0.011 4.011 17 Cl -0.063 7.063 18 C -0.124 4.124 19 C -0.099 4.099 20 C 0.043 3.957 21 N -0.518 5.518 22 C 0.034 3.966 23 C 0.062 3.938 24 O -0.394 6.394 25 C 0.060 3.940 26 C 0.028 3.972 27 H 0.266 0.734 28 H -0.002 1.002 29 H -0.012 1.012 30 H 0.430 0.570 31 H 0.428 0.572 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.122 0.878 39 H 0.039 0.961 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 -15.070 14.954 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.093 3.907 10 N -0.394 5.394 11 C 0.231 3.769 12 O -0.265 6.265 13 N -0.308 5.308 14 C 0.090 3.910 15 C -0.163 4.163 16 C -0.038 4.038 17 Cl -0.034 7.034 18 C -0.145 4.145 19 C -0.120 4.120 20 C -0.054 4.054 21 N -0.241 5.241 22 C -0.092 4.092 23 C -0.015 4.015 24 O -0.313 6.313 25 C -0.017 4.017 26 C -0.098 4.098 27 H 0.075 0.925 28 H 0.016 0.984 29 H 0.005 0.995 30 H 0.290 0.710 31 H 0.273 0.727 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.140 0.860 39 H 0.058 0.942 40 H 0.142 0.858 41 H 0.104 0.896 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.610 -14.796 14.375 20.638 hybrid contribution -0.065 0.769 -0.098 0.778 sum -0.675 -14.027 14.276 20.025 Atomic orbital electron populations 1.70042 1.07338 1.28050 1.50925 1.25812 0.95817 1.02699 0.94483 0.85490 0.78318 0.78153 0.78974 1.19560 1.20255 1.19482 1.21339 0.93244 0.91089 1.51084 0.93095 1.18942 0.90031 0.87987 0.93728 1.72459 1.35101 1.08864 1.22938 1.20035 0.84446 0.87907 0.84544 1.84682 1.36680 1.48662 1.56512 1.42831 1.29357 1.27579 1.31056 1.17795 0.97544 0.87675 0.87999 1.20931 1.04280 0.89935 1.01120 1.20733 1.01092 0.86457 0.95538 1.98366 1.87492 1.22641 1.94873 1.21067 1.00008 0.97876 0.95501 1.21506 0.99021 0.91910 0.99536 1.18630 1.04342 0.90088 0.92349 1.59572 1.04258 1.18385 1.41885 1.22766 0.98203 0.96145 0.92091 1.22748 0.81665 0.95179 1.01934 1.87933 1.18251 1.82677 1.42411 1.22785 0.96442 0.91961 0.90483 1.22870 0.87015 0.98267 1.01678 0.92489 0.98391 0.99456 0.71043 0.72722 0.83775 0.82368 0.82886 0.91525 0.90380 0.94421 0.85987 0.94226 0.85787 0.89579 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.80 13.29 21.45 0.28 -54.51 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -31.15 9.39 25.60 0.24 -30.91 16 8 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 9 C 0.22 12.18 6.06 85.63 0.52 12.70 16 10 N -0.65 -30.41 10.48 -469.58 -4.92 -35.33 16 11 C 0.54 20.95 8.46 179.59 1.52 22.47 16 12 O -0.47 -13.80 10.25 -83.83 -0.86 -14.66 16 13 N -0.66 -24.28 5.20 -301.20 -1.57 -25.85 16 14 C 0.19 5.70 6.41 38.20 0.24 5.94 16 15 C -0.14 -3.77 8.41 22.39 0.19 -3.58 16 16 C -0.01 -0.24 6.32 22.33 0.14 -0.10 16 17 Cl -0.06 -1.25 28.95 -2.72 -0.08 -1.33 16 18 C -0.12 -2.27 9.82 22.30 0.22 -2.05 16 19 C -0.10 -1.91 8.63 22.38 0.19 -1.72 16 20 C 0.04 1.11 4.76 38.23 0.18 1.29 16 21 N -0.52 -13.71 4.10 -693.65 -2.85 -16.56 16 22 C 0.03 0.82 5.41 86.31 0.47 1.28 16 23 C 0.06 1.55 7.01 72.02 0.50 2.05 16 24 O -0.39 -10.38 10.83 -148.98 -1.61 -12.00 16 25 C 0.06 1.45 7.01 72.02 0.50 1.96 16 26 C 0.03 0.63 5.36 86.32 0.46 1.09 16 27 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 29 H -0.01 -0.67 5.39 -2.39 -0.01 -0.68 16 30 H 0.43 9.70 8.97 -74.06 -0.66 9.04 16 31 H 0.43 17.56 5.73 -92.71 -0.53 17.03 16 32 H 0.14 4.03 5.98 -2.91 -0.02 4.01 16 33 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.15 2.21 7.04 -2.91 -0.02 2.19 16 35 H 0.07 1.29 7.43 -2.39 -0.02 1.28 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 1.22 7.21 -2.39 -0.02 1.21 16 Total: -1.00 -68.79 361.37 -3.84 -72.63 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.11 Total: 29.37 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 5.85 Total: 11.52 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -9.05 Total: -132.26 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -2.47 Total: -26.66 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -68.79 -3.84 -72.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331150856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.478 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds