Wall clock time and date at job start Tue Mar 31 2020 22:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00395 * 2 1 4 4 H 1.48495 * 109.46965 * 240.00003 * 3 2 1 5 5 H 1.48497 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47021 * 120.00108 * 3 2 1 7 7 C 1.37876 * 119.99386 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00564 * 359.97438 * 7 2 1 10 10 O 1.42900 * 113.41315 * 313.20488 * 9 7 2 11 11 C 1.53492 * 114.20966 * 180.02562 * 9 7 2 12 12 N 1.47069 * 87.98397 * 220.34604 * 11 9 7 13 13 S 1.65608 * 136.05673 * 207.08194 * 12 11 9 14 14 O 1.42095 * 104.27841 * 206.07353 * 13 12 11 15 15 O 1.42102 * 104.27658 * 333.93068 * 13 12 11 16 16 C 1.81406 * 104.44741 * 89.99994 * 13 12 11 17 17 C 1.52991 * 109.46937 * 179.97438 * 16 13 12 18 18 H 1.09005 * 109.47548 * 55.00084 * 17 16 13 19 19 C 1.53009 * 109.47455 * 295.00240 * 17 16 13 20 20 C 1.52992 * 109.47294 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47649 * 59.99528 * 20 19 17 22 22 C 1.52997 * 109.47393 * 300.00414 * 21 20 19 23 23 C 1.52997 * 109.47285 * 175.00294 * 17 16 13 24 24 F 1.39906 * 109.46927 * 299.99988 * 23 17 16 25 25 F 1.39895 * 109.47157 * 59.99775 * 23 17 16 26 26 C 1.47063 * 87.88553 * 27.34219 * 12 11 9 27 27 H 0.97002 * 119.99876 * 359.97438 * 1 2 3 28 28 H 0.96703 * 114.00037 * 46.79094 * 10 9 7 29 29 H 1.08992 * 113.46903 * 105.56580 * 11 9 7 30 30 H 1.08996 * 113.52363 * 335.13330 * 11 9 7 31 31 H 1.09000 * 109.47167 * 300.00580 * 16 13 12 32 32 H 1.09000 * 109.46895 * 59.99901 * 16 13 12 33 33 H 1.09005 * 109.46615 * 300.00415 * 19 17 16 34 34 H 1.08998 * 109.46896 * 59.99590 * 19 17 16 35 35 H 1.09001 * 109.46849 * 299.99651 * 20 19 17 36 36 H 1.09000 * 109.47302 * 180.02562 * 20 19 17 37 37 H 1.09000 * 109.47512 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.46894 * 60.00151 * 21 20 19 39 39 H 1.09001 * 109.46885 * 299.99742 * 22 21 20 40 40 H 1.08995 * 109.47385 * 179.97438 * 22 21 20 41 41 H 1.09004 * 113.46793 * 87.43927 * 26 12 11 42 42 H 1.08998 * 113.46591 * 217.87612 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.1898 -2.5423 0.9557 11 6 2.1485 -3.7443 -0.0005 12 7 1.2096 -4.3574 -0.9521 13 16 0.7493 -5.8982 -1.3481 14 8 0.3087 -5.7970 -2.6952 15 8 1.8713 -6.6988 -1.0025 16 6 -0.6479 -6.2505 -0.2461 17 6 -1.1687 -7.6630 -0.5187 18 1 -0.3502 -8.3767 -0.4246 19 6 -1.7435 -7.7301 -1.9352 20 6 -2.2649 -9.1424 -2.2076 21 6 -3.3602 -9.4857 -1.1960 22 6 -2.7856 -9.4186 0.2204 23 6 -2.2640 -8.0068 0.4928 24 9 -1.7385 -7.9454 1.7879 25 9 -3.3145 -7.0909 0.3719 26 6 0.8641 -3.0005 -1.4017 27 1 -0.4850 0.8401 0.0004 28 1 -0.3737 -1.7564 0.9536 29 1 2.1847 -4.2533 0.9626 30 1 3.1384 -3.5669 -0.4208 31 1 -0.3201 -6.1775 0.7909 32 1 -1.4443 -5.5287 -0.4270 33 1 -2.5620 -7.0164 -2.0293 34 1 -0.9632 -7.4852 -2.6558 35 1 -1.4466 -9.8563 -2.1133 36 1 -2.6739 -9.1904 -3.2168 37 1 -3.7320 -10.4917 -1.3903 38 1 -4.1785 -8.7718 -1.2903 39 1 -1.9673 -10.1325 0.3147 40 1 -3.5660 -9.6627 0.9411 41 1 1.5152 -2.6260 -2.1917 42 1 -0.1939 -2.8758 -1.6323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332421830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:33 Heat of formation + Delta-G solvation = -198.350303 kcal Electronic energy + Delta-G solvation = -29292.754303 eV Core-core repulsion = 24843.473993 eV Total energy + Delta-G solvation = -4449.280310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.08732 -47.03587 -38.65221 -38.26143 -36.77356 -35.66447 -33.99429 -33.35013 -32.16892 -30.41245 -27.95500 -26.97406 -25.08992 -24.70395 -23.22153 -22.16643 -20.32722 -19.68951 -18.35458 -17.77051 -17.45992 -17.00502 -16.78548 -16.38814 -15.90486 -15.74467 -15.16477 -14.87642 -14.64620 -14.26883 -14.14923 -13.75110 -13.60637 -13.48413 -13.33243 -13.27217 -13.05021 -12.80688 -12.60633 -12.30393 -12.13077 -11.87078 -11.77447 -11.74019 -11.67923 -11.54269 -11.50823 -11.05848 -11.04896 -10.96463 -10.88151 -10.83056 -10.49863 -10.26475 -10.11709 -9.30502 -8.79314 -8.54903 -8.07712 -6.37712 -4.47238 0.50781 2.99409 3.18204 3.23955 3.26619 3.54270 3.74862 3.92309 4.00729 4.19046 4.21366 4.33196 4.52416 4.64330 4.70075 4.80531 4.85249 4.87099 4.99030 5.14553 5.28559 5.35264 5.42973 5.54734 5.57891 5.64874 5.78105 5.80069 5.87209 6.03801 6.03960 6.11667 6.30718 6.37369 6.64707 6.72204 7.01832 7.49264 7.67396 7.84697 8.55633 9.23232 9.48825 10.68924 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.003367 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.195405 B = 8314.487056 C = 8815.868536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.238 3.762 10 O -0.574 6.574 11 C 0.134 3.866 12 N -1.042 6.042 13 S 2.639 3.361 14 O -0.958 6.958 15 O -0.964 6.964 16 C -0.634 4.634 17 C -0.113 4.113 18 H 0.109 0.891 19 C -0.148 4.148 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.303 3.697 24 F -0.198 7.198 25 F -0.193 7.193 26 C 0.106 3.894 27 H 0.274 0.726 28 H 0.394 0.606 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 -15.873 -1.710 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.194 3.806 10 O -0.387 6.387 11 C 0.009 3.991 12 N -0.882 5.882 13 S 2.734 3.266 14 O -0.948 6.948 15 O -0.955 6.955 16 C -0.762 4.762 17 C -0.133 4.133 18 H 0.127 0.873 19 C -0.185 4.185 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.197 4.197 23 C 0.266 3.734 24 F -0.178 7.178 25 F -0.174 7.174 26 C -0.019 4.019 27 H 0.084 0.916 28 H 0.251 0.749 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.704 -17.084 -2.262 18.152 hybrid contribution -0.410 1.706 0.577 1.847 sum -6.114 -15.378 -1.685 16.634 Atomic orbital electron populations 1.69246 1.06200 1.28273 1.50271 1.25076 0.95018 0.99889 0.93084 0.86374 0.79476 0.81608 0.78960 1.19882 1.21053 1.19882 1.21475 0.93976 0.89969 1.51878 0.90960 1.19771 0.85301 0.91030 0.84450 1.85989 1.45107 1.48441 1.59174 1.22830 0.93129 0.92648 0.90489 1.59643 1.54624 1.20195 1.53780 1.03947 0.75512 0.72237 0.74927 1.93536 1.83809 1.85577 1.31926 1.93548 1.47651 1.68820 1.85468 1.30779 1.22295 1.03546 1.19535 1.21902 0.98622 0.96037 0.96786 0.87285 1.22108 1.03552 0.99052 0.93836 1.21599 0.98592 0.96030 0.99785 1.21557 0.98838 1.03024 0.92429 1.22552 1.03349 0.93775 1.00047 1.20848 0.83600 0.89317 0.79641 1.93017 1.87093 1.97090 1.40646 1.92996 1.59058 1.69464 1.95884 1.23699 1.00001 0.76186 1.02046 0.91553 0.74893 0.91811 0.89609 0.84129 0.84003 0.89497 0.88517 0.91145 0.90325 0.90312 0.90628 0.88584 0.89206 0.90179 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.67 11.01 55.43 0.61 -22.05 16 2 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 3 Si 0.91 19.37 29.54 -169.99 -5.02 14.35 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.53 -13.24 8.69 -34.44 -0.30 -13.53 16 8 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.24 5.58 1.59 -91.13 -0.14 5.43 16 10 O -0.57 -14.09 13.55 -35.23 -0.48 -14.57 16 11 C 0.13 2.77 8.10 -8.51 -0.07 2.70 16 12 N -1.04 -20.88 4.10 -125.02 -0.51 -21.39 16 13 S 2.64 46.78 5.61 -107.50 -0.60 46.17 16 14 O -0.96 -18.28 15.81 -57.54 -0.91 -19.19 16 15 O -0.96 -18.87 18.07 -57.54 -1.04 -19.90 16 16 C -0.63 -9.52 5.38 37.15 0.20 -9.32 16 17 C -0.11 -1.43 1.84 -90.62 -0.17 -1.59 16 18 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.15 -1.71 4.77 -26.73 -0.13 -1.84 16 20 C -0.12 -1.03 5.92 -26.74 -0.16 -1.19 16 21 C -0.12 -0.91 5.80 -26.73 -0.16 -1.07 16 22 C -0.16 -1.37 5.45 -26.76 -0.15 -1.52 16 23 C 0.30 3.71 1.63 -26.76 -0.04 3.67 16 24 F -0.20 -2.77 16.46 2.25 0.04 -2.73 16 25 F -0.19 -2.68 15.59 2.25 0.04 -2.65 16 26 C 0.11 2.31 8.12 -8.37 -0.07 2.24 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.39 9.97 6.33 45.56 0.29 10.26 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 31 H 0.14 2.11 7.66 -51.92 -0.40 1.71 16 32 H 0.14 2.13 7.94 -51.92 -0.41 1.72 16 33 H 0.09 1.02 7.80 -51.93 -0.41 0.61 16 34 H 0.10 1.23 5.61 -51.93 -0.29 0.94 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.61 7.80 -51.93 -0.41 0.21 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -29.41 354.35 -9.21 -38.61 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.39 Total: 12.34 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.27 Total: -14.34 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.10 Total: -43.45 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -2.43 Total: -53.66 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.07 Total: -5.38 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 46.78 SS G_CDS: -0.60 Total: 46.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.41 -9.21 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332421830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.736 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds