Wall clock time and date at job start Tue Mar 31 2020 22:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00395 * 2 1 4 4 H 1.48495 * 109.46965 * 240.00003 * 3 2 1 5 5 H 1.48497 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47021 * 120.00108 * 3 2 1 7 7 C 1.37876 * 119.99386 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00564 * 359.97438 * 7 2 1 10 10 O 1.42900 * 113.41315 * 313.20488 * 9 7 2 11 11 C 1.53492 * 114.20966 * 180.02562 * 9 7 2 12 12 N 1.47069 * 87.98397 * 220.34604 * 11 9 7 13 13 S 1.65608 * 136.05673 * 207.08194 * 12 11 9 14 14 O 1.42095 * 104.27841 * 206.07353 * 13 12 11 15 15 O 1.42102 * 104.27658 * 333.93068 * 13 12 11 16 16 C 1.81406 * 104.44741 * 89.99994 * 13 12 11 17 17 C 1.52991 * 109.46937 * 179.97438 * 16 13 12 18 18 H 1.09005 * 109.47548 * 55.00084 * 17 16 13 19 19 C 1.53009 * 109.47455 * 295.00240 * 17 16 13 20 20 C 1.52992 * 109.47294 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47649 * 59.99528 * 20 19 17 22 22 C 1.52997 * 109.47393 * 300.00414 * 21 20 19 23 23 C 1.52997 * 109.47285 * 175.00294 * 17 16 13 24 24 F 1.39906 * 109.46927 * 299.99988 * 23 17 16 25 25 F 1.39895 * 109.47157 * 59.99775 * 23 17 16 26 26 C 1.47063 * 87.88553 * 27.34219 * 12 11 9 27 27 H 0.97002 * 119.99876 * 359.97438 * 1 2 3 28 28 H 0.96703 * 114.00037 * 46.79094 * 10 9 7 29 29 H 1.08992 * 113.46903 * 105.56580 * 11 9 7 30 30 H 1.08996 * 113.52363 * 335.13330 * 11 9 7 31 31 H 1.09000 * 109.47167 * 300.00580 * 16 13 12 32 32 H 1.09000 * 109.46895 * 59.99901 * 16 13 12 33 33 H 1.09005 * 109.46615 * 300.00415 * 19 17 16 34 34 H 1.08998 * 109.46896 * 59.99590 * 19 17 16 35 35 H 1.09001 * 109.46849 * 299.99651 * 20 19 17 36 36 H 1.09000 * 109.47302 * 180.02562 * 20 19 17 37 37 H 1.09000 * 109.47512 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.46894 * 60.00151 * 21 20 19 39 39 H 1.09001 * 109.46885 * 299.99742 * 22 21 20 40 40 H 1.08995 * 109.47385 * 179.97438 * 22 21 20 41 41 H 1.09004 * 113.46793 * 87.43927 * 26 12 11 42 42 H 1.08998 * 113.46591 * 217.87612 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.1898 -2.5423 0.9557 11 6 2.1485 -3.7443 -0.0005 12 7 1.2096 -4.3574 -0.9521 13 16 0.7493 -5.8982 -1.3481 14 8 0.3087 -5.7970 -2.6952 15 8 1.8713 -6.6988 -1.0025 16 6 -0.6479 -6.2505 -0.2461 17 6 -1.1687 -7.6630 -0.5187 18 1 -0.3502 -8.3767 -0.4246 19 6 -1.7435 -7.7301 -1.9352 20 6 -2.2649 -9.1424 -2.2076 21 6 -3.3602 -9.4857 -1.1960 22 6 -2.7856 -9.4186 0.2204 23 6 -2.2640 -8.0068 0.4928 24 9 -1.7385 -7.9454 1.7879 25 9 -3.3145 -7.0909 0.3719 26 6 0.8641 -3.0005 -1.4017 27 1 -0.4850 0.8401 0.0004 28 1 -0.3737 -1.7564 0.9536 29 1 2.1847 -4.2533 0.9626 30 1 3.1384 -3.5669 -0.4208 31 1 -0.3201 -6.1775 0.7909 32 1 -1.4443 -5.5287 -0.4270 33 1 -2.5620 -7.0164 -2.0293 34 1 -0.9632 -7.4852 -2.6558 35 1 -1.4466 -9.8563 -2.1133 36 1 -2.6739 -9.1904 -3.2168 37 1 -3.7320 -10.4917 -1.3903 38 1 -4.1785 -8.7718 -1.2903 39 1 -1.9673 -10.1325 0.3147 40 1 -3.5660 -9.6627 0.9411 41 1 1.5152 -2.6260 -2.1917 42 1 -0.1939 -2.8758 -1.6323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332421830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:32 Heat of formation + Delta-G solvation = -218.952937 kcal Electronic energy + Delta-G solvation = -29293.647700 eV Core-core repulsion = 24843.473993 eV Total energy + Delta-G solvation = -4450.173707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.09548 -48.06395 -40.37479 -39.11091 -38.27926 -37.17510 -35.83024 -34.26527 -34.07345 -31.19025 -29.69213 -28.04509 -26.78946 -26.47715 -24.04866 -23.05286 -21.42390 -21.13816 -19.90407 -19.40121 -18.68102 -18.27401 -17.88871 -17.62819 -17.41046 -16.97070 -16.92889 -16.05076 -15.79594 -15.62368 -15.44324 -15.07520 -14.86434 -14.77218 -14.59599 -14.39615 -14.28816 -13.90255 -13.79662 -13.63274 -13.42160 -13.32046 -13.28904 -13.22908 -13.08456 -12.78271 -12.72025 -12.54190 -12.37894 -12.22507 -12.17796 -12.11359 -11.68400 -11.64603 -11.17878 -11.02787 -10.63909 -10.27972 -9.83087 -8.24408 -6.40551 -0.93109 1.47977 1.49481 1.52439 1.58626 2.41672 2.59133 2.64292 2.85894 2.89105 3.00452 3.11080 3.14105 3.60336 3.64623 3.71360 3.89367 3.98837 4.03288 4.13918 4.24221 4.27969 4.39602 4.47913 4.55514 4.64489 4.68050 4.71066 4.82729 4.94065 4.95031 4.96858 5.00073 5.14505 5.16401 5.23828 5.35878 5.70122 5.82027 5.98522 6.65667 7.32536 7.52600 8.81119 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.003367 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.195405 B = 8314.487056 C = 8815.868536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.030 3.970 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.218 3.782 10 O -0.581 6.581 11 C 0.134 3.866 12 N -1.047 6.047 13 S 2.649 3.351 14 O -0.973 6.973 15 O -0.981 6.981 16 C -0.619 4.619 17 C -0.120 4.120 18 H 0.127 0.873 19 C -0.153 4.153 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.155 4.155 23 C 0.294 3.706 24 F -0.210 7.210 25 F -0.207 7.207 26 C 0.108 3.892 27 H 0.275 0.725 28 H 0.388 0.612 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 -17.432 -1.826 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.170 4.170 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.093 0.907 9 C 0.174 3.826 10 O -0.394 6.394 11 C 0.009 3.991 12 N -0.885 5.885 13 S 2.747 3.253 14 O -0.964 6.964 15 O -0.972 6.972 16 C -0.750 4.750 17 C -0.140 4.140 18 H 0.145 0.855 19 C -0.190 4.190 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.193 4.193 23 C 0.256 3.744 24 F -0.191 7.191 25 F -0.188 7.188 26 C -0.018 4.018 27 H 0.085 0.915 28 H 0.244 0.756 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.842 -18.640 -2.398 19.681 hybrid contribution -0.392 2.149 0.628 2.273 sum -6.234 -16.492 -1.769 17.719 Atomic orbital electron populations 1.69324 1.07174 1.28889 1.50656 1.25770 0.95748 1.02673 0.92785 0.85443 0.78255 0.78043 0.78899 1.19467 1.20972 1.19717 1.21779 0.94374 0.90956 1.52185 0.90652 1.20014 0.85591 0.91925 0.85023 1.85972 1.45440 1.48076 1.59875 1.22830 0.93352 0.91579 0.91304 1.59662 1.54952 1.20301 1.53634 1.03632 0.75665 0.71174 0.74796 1.93516 1.84001 1.85493 1.33391 1.93522 1.49229 1.68712 1.85721 1.30590 1.20402 1.05675 1.18324 1.22106 0.99595 0.94435 0.97867 0.85526 1.22156 1.02869 1.01396 0.92611 1.21653 0.99449 0.93951 1.00830 1.21584 0.98129 1.04461 0.91344 1.22640 1.04400 0.91212 1.01021 1.21298 0.83145 0.91200 0.78716 1.92991 1.87316 1.97249 1.41593 1.92969 1.59590 1.70323 1.95884 1.23504 0.99588 0.77358 1.01313 0.91478 0.75608 0.90850 0.88323 0.84009 0.84199 0.90285 0.89970 0.89584 0.89076 0.87411 0.91460 0.86570 0.88041 0.90066 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.74 11.01 21.45 0.24 -46.51 16 2 C 0.03 1.50 5.40 84.65 0.46 1.95 16 3 Si 0.97 39.53 29.54 68.60 2.03 41.56 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.55 -27.54 8.69 25.60 0.22 -27.32 16 8 H 0.08 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.22 10.28 1.59 -11.12 -0.02 10.26 16 10 O -0.58 -29.00 13.55 -148.98 -2.02 -31.02 16 11 C 0.13 5.52 8.10 83.18 0.67 6.20 16 12 N -1.05 -41.97 4.10 -549.94 -2.25 -44.22 16 13 S 2.65 93.24 5.61 -56.49 -0.32 92.92 16 14 O -0.97 -37.13 15.81 -127.65 -2.02 -39.15 16 15 O -0.98 -37.71 18.07 -127.65 -2.31 -40.02 16 16 C -0.62 -18.37 5.38 71.98 0.39 -17.98 16 17 C -0.12 -2.86 1.84 -10.79 -0.02 -2.88 16 18 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 19 C -0.15 -3.35 4.77 30.59 0.15 -3.20 16 20 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 21 C -0.12 -1.41 5.80 30.59 0.18 -1.23 16 22 C -0.15 -2.21 5.45 30.58 0.17 -2.04 16 23 C 0.29 6.74 1.63 30.58 0.05 6.79 16 24 F -0.21 -5.65 16.46 44.97 0.74 -4.91 16 25 F -0.21 -5.59 15.59 44.97 0.70 -4.89 16 26 C 0.11 4.78 8.12 83.27 0.68 5.46 16 27 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 28 H 0.39 20.11 6.33 -74.06 -0.47 19.64 16 29 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.10 3.74 8.10 -2.39 -0.02 3.72 16 31 H 0.14 4.20 7.66 -2.39 -0.02 4.18 16 32 H 0.14 4.24 7.94 -2.39 -0.02 4.22 16 33 H 0.08 1.82 7.80 -2.38 -0.02 1.80 16 34 H 0.08 2.04 5.61 -2.39 -0.01 2.03 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.94 7.80 -2.39 -0.02 0.92 16 39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 3.50 8.10 -2.38 -0.02 3.49 16 42 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -62.27 354.35 -1.53 -63.81 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: 0.58 Total: 37.95 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.10 Total: -25.53 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -2.02 Total: -90.73 kcal Atomic # 8 Polarization: -103.84 SS G_CDS: -6.34 Total: -110.18 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 1.44 Total: -9.80 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 16 Polarization: 93.24 SS G_CDS: -0.32 Total: 92.92 kcal Total: -62.27 -1.53 -63.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332421830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.145 kcal (2) G-P(sol) polarization free energy of solvation -62.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds