Wall clock time and date at job start Tue Mar 31 2020 22:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00402 * 2 1 4 4 H 1.48504 * 109.47477 * 240.00623 * 3 2 1 5 5 H 1.48497 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47367 * 120.00529 * 3 2 1 7 7 C 1.37884 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99865 * 359.97438 * 7 2 1 10 10 O 1.42908 * 113.27969 * 313.06739 * 9 7 2 11 11 C 1.53491 * 114.20799 * 180.02562 * 9 7 2 12 12 N 1.47066 * 87.98891 * 220.14750 * 11 9 7 13 13 S 1.65599 * 136.06154 * 207.08758 * 12 11 9 14 14 O 1.42098 * 104.27340 * 333.92393 * 13 12 11 15 15 O 1.42097 * 104.27814 * 206.06967 * 13 12 11 16 16 C 1.81403 * 104.44954 * 89.99290 * 13 12 11 17 17 C 1.52997 * 109.47013 * 180.02562 * 16 13 12 18 18 H 1.09001 * 109.46922 * 305.00464 * 17 16 13 19 19 C 1.52996 * 109.47165 * 65.00210 * 17 16 13 20 20 C 1.53000 * 109.47518 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46806 * 299.99991 * 20 19 17 22 22 C 1.53006 * 109.46886 * 60.00087 * 21 20 19 23 23 C 1.52997 * 109.46974 * 299.99588 * 22 21 20 24 24 F 1.39905 * 109.47057 * 180.02562 * 23 22 21 25 25 F 1.39900 * 109.47435 * 300.00121 * 23 22 21 26 26 C 1.47069 * 87.88125 * 27.33871 * 12 11 9 27 27 H 0.97002 * 119.99572 * 359.97438 * 1 2 3 28 28 H 0.96700 * 113.99836 * 46.93511 * 10 9 7 29 29 H 1.09001 * 113.46711 * 105.36464 * 11 9 7 30 30 H 1.08999 * 113.46729 * 334.92651 * 11 9 7 31 31 H 1.09000 * 109.46565 * 60.00263 * 16 13 12 32 32 H 1.08994 * 109.47101 * 300.00442 * 16 13 12 33 33 H 1.09001 * 109.46997 * 59.99740 * 19 17 16 34 34 H 1.09004 * 109.47552 * 300.00012 * 19 17 16 35 35 H 1.09002 * 109.47398 * 180.02562 * 20 19 17 36 36 H 1.09001 * 109.47194 * 59.99866 * 20 19 17 37 37 H 1.08998 * 109.47387 * 300.00361 * 21 20 19 38 38 H 1.09001 * 109.47248 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46866 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.47377 * 59.99963 * 22 21 20 41 41 H 1.09004 * 113.46697 * 87.44332 * 26 12 11 42 42 H 1.09002 * 113.46839 * 217.87652 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.1926 -2.5403 0.9589 11 6 2.1486 -3.7443 -0.0005 12 7 1.2071 -4.3594 -0.9482 13 16 0.7457 -5.9009 -1.3397 14 8 1.8686 -6.7008 -0.9956 15 8 0.3013 -5.8024 -2.6858 16 6 -0.6484 -6.2510 -0.2330 17 6 -1.1692 -7.6645 -0.5005 18 1 -1.4167 -7.7667 -1.5571 19 6 -0.0911 -8.6843 -0.1284 20 6 -0.6121 -10.0979 -0.3952 21 6 -1.8635 -10.3478 0.4489 22 6 -2.9418 -9.3281 0.0767 23 6 -2.4207 -7.9145 0.3435 24 9 -3.4068 -6.9821 0.0037 25 9 -2.1026 -7.7829 1.6995 26 6 0.8603 -3.0034 -1.3995 27 1 -0.4849 0.8401 0.0004 28 1 -0.3710 -1.7545 0.9566 29 1 2.1875 -4.2513 0.9636 30 1 3.1370 -3.5667 -0.4242 31 1 -1.4453 -5.5296 -0.4132 32 1 -0.3177 -6.1759 0.8028 33 1 0.1565 -8.5821 0.9282 34 1 0.8007 -8.5059 -0.7293 35 1 0.1559 -10.8244 -0.1296 36 1 -0.8600 -10.2004 -1.4517 37 1 -1.6157 -10.2453 1.5053 38 1 -2.2350 -11.3547 0.2585 39 1 -3.8334 -9.5064 0.6777 40 1 -3.1896 -9.4306 -0.9798 41 1 1.5091 -2.6305 -2.1921 42 1 -0.1984 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332421831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:35 Heat of formation + Delta-G solvation = -198.355680 kcal Electronic energy + Delta-G solvation = -29282.350971 eV Core-core repulsion = 24833.070428 eV Total energy + Delta-G solvation = -4449.280543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.08535 -47.03324 -38.65119 -38.26571 -36.77398 -35.66494 -33.99502 -33.35210 -32.16520 -30.41398 -27.95372 -26.97526 -25.08858 -24.70689 -23.22502 -22.16773 -20.33141 -19.68976 -18.35429 -17.76656 -17.45895 -17.00531 -16.78767 -16.39314 -15.90274 -15.74336 -15.16177 -14.87687 -14.65846 -14.26300 -14.15316 -13.72832 -13.60515 -13.51611 -13.33851 -13.25874 -13.06233 -12.79641 -12.60589 -12.30669 -12.12947 -11.87326 -11.78929 -11.74353 -11.66899 -11.53449 -11.51910 -11.05922 -11.05002 -10.97067 -10.88270 -10.83034 -10.49768 -10.26562 -10.11904 -9.30429 -8.78989 -8.54902 -8.07800 -6.37549 -4.47161 0.50775 2.99384 3.18245 3.24077 3.26620 3.54255 3.74710 3.92351 4.00466 4.19221 4.21049 4.33224 4.52359 4.64135 4.69595 4.80147 4.84796 4.87282 4.98748 5.14256 5.28184 5.35359 5.42978 5.54405 5.57660 5.64082 5.77253 5.79780 5.86135 6.02850 6.03883 6.11835 6.30532 6.37070 6.64727 6.72283 7.01890 7.49198 7.67503 7.84975 8.55747 9.23309 9.48949 10.69078 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.003363 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.572814 B = 8324.739537 C = 8967.930458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.238 3.762 10 O -0.574 6.574 11 C 0.135 3.865 12 N -1.042 6.042 13 S 2.639 3.361 14 O -0.960 6.960 15 O -0.962 6.962 16 C -0.634 4.634 17 C -0.113 4.113 18 H 0.109 0.891 19 C -0.148 4.148 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.303 3.697 24 F -0.197 7.197 25 F -0.193 7.193 26 C 0.105 3.895 27 H 0.274 0.726 28 H 0.394 0.606 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -16.798 0.061 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.194 3.806 10 O -0.387 6.387 11 C 0.010 3.990 12 N -0.882 5.882 13 S 2.734 3.266 14 O -0.951 6.951 15 O -0.952 6.952 16 C -0.762 4.762 17 C -0.134 4.134 18 H 0.127 0.873 19 C -0.185 4.185 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.197 4.197 23 C 0.266 3.734 24 F -0.178 7.178 25 F -0.174 7.174 26 C -0.020 4.020 27 H 0.085 0.915 28 H 0.251 0.749 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.110 -18.007 -0.495 18.476 hybrid contribution -0.568 1.797 0.407 1.928 sum -4.678 -16.210 -0.088 16.871 Atomic orbital electron populations 1.69245 1.06204 1.28279 1.50237 1.25079 0.95019 0.99900 0.93085 0.86376 0.79474 0.81608 0.78957 1.19878 1.21056 1.19883 1.21473 0.93967 0.89966 1.51903 0.90960 1.19776 0.85327 0.91055 0.84394 1.85986 1.45317 1.48521 1.58914 1.22823 0.93056 0.92575 0.90539 1.59641 1.54434 1.20201 1.53967 1.03941 0.75647 0.72193 0.74827 1.93529 1.47754 1.68366 1.85451 1.93555 1.83903 1.85728 1.32053 1.30779 1.22345 1.03289 1.19744 1.21903 0.95705 0.93884 1.01878 0.87269 1.22104 0.97704 0.93829 1.04869 1.21604 0.97566 0.96302 1.00548 1.21561 0.94532 0.98479 1.01262 1.22563 1.00583 0.91725 1.04875 1.20854 0.86143 0.88562 0.77844 1.93022 1.64016 1.68626 1.92134 1.92993 1.93272 1.96650 1.34522 1.23706 1.00022 0.76258 1.02061 0.91545 0.74888 0.91784 0.89619 0.84095 0.84037 0.89528 0.88521 0.90334 0.91126 0.90639 0.90315 0.89205 0.88571 0.90171 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.72 11.01 55.43 0.61 -22.11 16 2 C 0.07 1.77 5.39 -17.82 -0.10 1.68 16 3 Si 0.91 19.39 29.54 -169.99 -5.02 14.37 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.53 -13.24 8.70 -34.44 -0.30 -13.54 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 5.58 1.58 -91.13 -0.14 5.43 16 10 O -0.57 -14.10 13.55 -35.23 -0.48 -14.58 16 11 C 0.14 2.77 8.10 -8.52 -0.07 2.70 16 12 N -1.04 -20.88 4.10 -125.03 -0.51 -21.39 16 13 S 2.64 46.77 5.61 -107.50 -0.60 46.17 16 14 O -0.96 -17.89 15.81 -57.54 -0.91 -18.80 16 15 O -0.96 -19.25 18.07 -57.54 -1.04 -20.29 16 16 C -0.63 -9.52 5.38 37.16 0.20 -9.32 16 17 C -0.11 -1.43 1.84 -90.62 -0.17 -1.60 16 18 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 19 C -0.15 -1.68 4.77 -26.73 -0.13 -1.80 16 20 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 21 C -0.12 -0.90 5.80 -26.73 -0.16 -1.06 16 22 C -0.16 -1.37 5.45 -26.73 -0.15 -1.52 16 23 C 0.30 3.72 1.63 -26.73 -0.04 3.68 16 24 F -0.20 -2.80 16.46 2.25 0.04 -2.76 16 25 F -0.19 -2.66 15.59 2.25 0.04 -2.63 16 26 C 0.10 2.30 8.13 -8.38 -0.07 2.24 16 27 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.39 9.99 6.32 45.56 0.29 10.28 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 31 H 0.14 2.16 7.66 -51.92 -0.40 1.76 16 32 H 0.14 2.08 7.94 -51.93 -0.41 1.67 16 33 H 0.09 0.98 7.80 -51.93 -0.41 0.58 16 34 H 0.10 1.21 5.61 -51.93 -0.29 0.91 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -29.46 354.36 -9.21 -38.66 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.39 Total: 12.30 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.27 Total: -14.29 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.10 Total: -43.50 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -2.43 Total: -53.66 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.07 Total: -5.39 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 46.77 SS G_CDS: -0.60 Total: 46.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.46 -9.21 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332421831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.693 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds