Wall clock time and date at job start Tue Mar 31 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00402 * 2 1 4 4 H 1.48504 * 109.47477 * 240.00623 * 3 2 1 5 5 H 1.48497 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47367 * 120.00529 * 3 2 1 7 7 C 1.37884 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99865 * 359.97438 * 7 2 1 10 10 O 1.42908 * 113.27969 * 313.06739 * 9 7 2 11 11 C 1.53491 * 114.20799 * 180.02562 * 9 7 2 12 12 N 1.47066 * 87.98891 * 220.14750 * 11 9 7 13 13 S 1.65599 * 136.06154 * 207.08758 * 12 11 9 14 14 O 1.42098 * 104.27340 * 333.92393 * 13 12 11 15 15 O 1.42097 * 104.27814 * 206.06967 * 13 12 11 16 16 C 1.81403 * 104.44954 * 89.99290 * 13 12 11 17 17 C 1.52997 * 109.47013 * 180.02562 * 16 13 12 18 18 H 1.09001 * 109.46922 * 305.00464 * 17 16 13 19 19 C 1.52996 * 109.47165 * 65.00210 * 17 16 13 20 20 C 1.53000 * 109.47518 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46806 * 299.99991 * 20 19 17 22 22 C 1.53006 * 109.46886 * 60.00087 * 21 20 19 23 23 C 1.52997 * 109.46974 * 299.99588 * 22 21 20 24 24 F 1.39905 * 109.47057 * 180.02562 * 23 22 21 25 25 F 1.39900 * 109.47435 * 300.00121 * 23 22 21 26 26 C 1.47069 * 87.88125 * 27.33871 * 12 11 9 27 27 H 0.97002 * 119.99572 * 359.97438 * 1 2 3 28 28 H 0.96700 * 113.99836 * 46.93511 * 10 9 7 29 29 H 1.09001 * 113.46711 * 105.36464 * 11 9 7 30 30 H 1.08999 * 113.46729 * 334.92651 * 11 9 7 31 31 H 1.09000 * 109.46565 * 60.00263 * 16 13 12 32 32 H 1.08994 * 109.47101 * 300.00442 * 16 13 12 33 33 H 1.09001 * 109.46997 * 59.99740 * 19 17 16 34 34 H 1.09004 * 109.47552 * 300.00012 * 19 17 16 35 35 H 1.09002 * 109.47398 * 180.02562 * 20 19 17 36 36 H 1.09001 * 109.47194 * 59.99866 * 20 19 17 37 37 H 1.08998 * 109.47387 * 300.00361 * 21 20 19 38 38 H 1.09001 * 109.47248 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46866 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.47377 * 59.99963 * 22 21 20 41 41 H 1.09004 * 113.46697 * 87.44332 * 26 12 11 42 42 H 1.09002 * 113.46839 * 217.87652 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.1926 -2.5403 0.9589 11 6 2.1486 -3.7443 -0.0005 12 7 1.2071 -4.3594 -0.9482 13 16 0.7457 -5.9009 -1.3397 14 8 1.8686 -6.7008 -0.9956 15 8 0.3013 -5.8024 -2.6858 16 6 -0.6484 -6.2510 -0.2330 17 6 -1.1692 -7.6645 -0.5005 18 1 -1.4167 -7.7667 -1.5571 19 6 -0.0911 -8.6843 -0.1284 20 6 -0.6121 -10.0979 -0.3952 21 6 -1.8635 -10.3478 0.4489 22 6 -2.9418 -9.3281 0.0767 23 6 -2.4207 -7.9145 0.3435 24 9 -3.4068 -6.9821 0.0037 25 9 -2.1026 -7.7829 1.6995 26 6 0.8603 -3.0034 -1.3995 27 1 -0.4849 0.8401 0.0004 28 1 -0.3710 -1.7545 0.9566 29 1 2.1875 -4.2513 0.9636 30 1 3.1370 -3.5667 -0.4242 31 1 -1.4453 -5.5296 -0.4132 32 1 -0.3177 -6.1759 0.8028 33 1 0.1565 -8.5821 0.9282 34 1 0.8007 -8.5059 -0.7293 35 1 0.1559 -10.8244 -0.1296 36 1 -0.8600 -10.2004 -1.4517 37 1 -1.6157 -10.2453 1.5053 38 1 -2.2350 -11.3547 0.2585 39 1 -3.8334 -9.5064 0.6777 40 1 -3.1896 -9.4306 -0.9798 41 1 1.5091 -2.6305 -2.1921 42 1 -0.1984 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332421831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:34 Heat of formation + Delta-G solvation = -219.015858 kcal Electronic energy + Delta-G solvation = -29283.246864 eV Core-core repulsion = 24833.070428 eV Total energy + Delta-G solvation = -4450.176436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.09672 -48.06506 -40.37363 -39.10779 -38.28093 -37.17600 -35.83126 -34.26402 -34.07101 -31.18484 -29.69106 -28.04250 -26.78759 -26.48144 -24.04603 -23.05022 -21.42306 -21.13745 -19.90345 -19.39825 -18.68058 -18.27495 -17.89375 -17.63226 -17.40402 -16.98579 -16.91633 -16.04286 -15.81980 -15.59301 -15.45507 -15.06248 -14.87739 -14.77149 -14.60178 -14.39560 -14.28729 -13.89217 -13.79562 -13.62582 -13.43158 -13.33169 -13.29230 -13.22845 -13.07612 -12.78082 -12.71221 -12.55088 -12.37232 -12.22536 -12.17737 -12.11366 -11.68071 -11.64130 -11.17432 -11.02788 -10.63658 -10.28130 -9.83243 -8.24413 -6.40651 -0.93140 1.47926 1.49419 1.52417 1.58569 2.41603 2.59126 2.64215 2.85875 2.88972 3.00403 3.11201 3.14104 3.60342 3.64733 3.71169 3.89448 3.99283 4.03695 4.14261 4.24515 4.27859 4.39711 4.48299 4.55555 4.64936 4.68387 4.70932 4.83062 4.93797 4.95194 4.97272 5.00032 5.15001 5.16764 5.23836 5.36360 5.70058 5.81934 5.98718 6.65756 7.32472 7.52421 8.81090 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.003363 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.572814 B = 8324.739537 C = 8967.930458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.030 3.970 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.218 3.782 10 O -0.581 6.581 11 C 0.137 3.863 12 N -1.047 6.047 13 S 2.649 3.351 14 O -0.969 6.969 15 O -0.985 6.985 16 C -0.619 4.619 17 C -0.120 4.120 18 H 0.124 0.876 19 C -0.152 4.152 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.155 4.155 23 C 0.293 3.707 24 F -0.212 7.212 25 F -0.205 7.205 26 C 0.106 3.894 27 H 0.275 0.725 28 H 0.388 0.612 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -18.380 0.030 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.170 4.170 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.094 0.906 9 C 0.174 3.826 10 O -0.394 6.394 11 C 0.012 3.988 12 N -0.885 5.885 13 S 2.748 3.252 14 O -0.960 6.960 15 O -0.976 6.976 16 C -0.750 4.750 17 C -0.141 4.141 18 H 0.142 0.858 19 C -0.189 4.189 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.193 4.193 23 C 0.256 3.744 24 F -0.193 7.193 25 F -0.186 7.186 26 C -0.020 4.020 27 H 0.085 0.915 28 H 0.244 0.756 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.154 -19.589 -0.542 20.031 hybrid contribution -0.570 2.240 0.442 2.353 sum -4.724 -17.349 -0.100 17.981 Atomic orbital electron populations 1.69325 1.07197 1.28887 1.50660 1.25781 0.95750 1.02716 0.92798 0.85440 0.78243 0.78013 0.78911 1.19468 1.21013 1.19669 1.21783 0.94386 0.90942 1.52156 0.90601 1.20023 0.85637 0.92022 0.84883 1.85971 1.45650 1.48143 1.59603 1.22817 0.93214 0.91396 0.91384 1.59659 1.54783 1.20261 1.53846 1.03622 0.75893 0.71166 0.74559 1.93516 1.48939 1.67990 1.85514 1.93522 1.84274 1.85804 1.34039 1.30590 1.20419 1.05359 1.18622 1.22107 0.96553 0.92334 1.03069 0.85831 1.22155 0.96818 0.95641 1.04305 1.21660 0.98362 0.94225 1.01677 1.21588 0.93718 0.99507 1.00662 1.22651 1.01247 0.89084 1.06347 1.21307 0.85678 0.90360 0.77026 1.92993 1.64533 1.69565 1.92199 1.92968 1.93372 1.96824 1.35474 1.23521 0.99517 0.77560 1.01430 0.91487 0.75628 0.90667 0.88301 0.84455 0.83753 0.89966 0.89876 0.88918 0.89761 0.91289 0.87462 0.88062 0.86745 0.90077 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.91 11.01 21.45 0.24 -46.67 16 2 C 0.03 1.47 5.39 84.66 0.46 1.92 16 3 Si 0.97 39.58 29.54 68.60 2.03 41.61 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -27.52 8.70 25.60 0.22 -27.30 16 8 H 0.08 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.22 10.27 1.58 -11.12 -0.02 10.25 16 10 O -0.58 -29.01 13.55 -148.98 -2.02 -31.02 16 11 C 0.14 5.57 8.10 83.17 0.67 6.24 16 12 N -1.05 -41.95 4.10 -549.96 -2.25 -44.21 16 13 S 2.65 93.25 5.61 -56.49 -0.32 92.93 16 14 O -0.97 -35.55 15.81 -127.65 -2.02 -37.57 16 15 O -0.99 -39.33 18.07 -127.65 -2.31 -41.64 16 16 C -0.62 -18.38 5.38 71.98 0.39 -17.99 16 17 C -0.12 -2.88 1.84 -10.80 -0.02 -2.90 16 18 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 19 C -0.15 -3.22 4.77 30.59 0.15 -3.07 16 20 C -0.12 -1.66 5.92 30.60 0.18 -1.48 16 21 C -0.12 -1.37 5.80 30.60 0.18 -1.19 16 22 C -0.16 -2.24 5.45 30.60 0.17 -2.07 16 23 C 0.29 6.77 1.63 30.59 0.05 6.82 16 24 F -0.21 -5.84 16.46 44.97 0.74 -5.10 16 25 F -0.21 -5.46 15.59 44.97 0.70 -4.76 16 26 C 0.11 4.71 8.13 83.26 0.68 5.39 16 27 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 28 H 0.39 20.15 6.32 -74.06 -0.47 19.68 16 29 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.10 3.71 8.10 -2.39 -0.02 3.69 16 31 H 0.14 4.22 7.66 -2.39 -0.02 4.20 16 32 H 0.14 4.22 7.94 -2.39 -0.02 4.20 16 33 H 0.08 1.78 7.80 -2.39 -0.02 1.76 16 34 H 0.08 1.99 5.61 -2.39 -0.01 1.97 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.92 7.80 -2.39 -0.02 0.90 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 3.53 8.10 -2.38 -0.02 3.51 16 42 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -62.41 354.36 -1.53 -63.95 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.58 Total: 37.86 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 3.10 Total: -25.38 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -2.02 Total: -90.88 kcal Atomic # 8 Polarization: -103.88 SS G_CDS: -6.34 Total: -110.23 kcal Atomic # 9 Polarization: -11.30 SS G_CDS: 1.44 Total: -9.86 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 16 Polarization: 93.25 SS G_CDS: -0.32 Total: 92.93 kcal Total: -62.41 -1.53 -63.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332421831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.071 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds