Wall clock time and date at job start Tue Mar 31 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46857 * 2 1 4 4 O 1.33500 * 125.82849 * 270.21871 * 3 2 1 5 5 C 1.34895 * 109.90734 * 180.18657 * 4 3 2 6 6 C 1.46635 * 125.65240 * 179.88012 * 5 4 3 7 7 O 1.21733 * 119.99679 * 173.84028 * 6 5 4 8 8 N 1.34779 * 120.00544 * 353.57164 * 6 5 4 9 9 C 1.36858 * 119.99720 * 356.26695 * 8 6 5 10 10 H 1.08002 * 119.99606 * 316.94810 * 9 8 6 11 11 C 1.39020 * 119.99954 * 136.94413 * 9 8 6 12 12 N 1.31386 * 120.00174 * 343.69160 * 11 9 8 13 13 Si 1.86805 * 120.00060 * 163.68675 * 11 9 8 14 14 H 1.48503 * 109.46840 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47082 * 120.00002 * 13 11 9 16 16 H 1.48492 * 109.47410 * 240.00299 * 13 11 9 17 17 C 1.46497 * 120.00477 * 176.26846 * 8 6 5 18 18 C 1.50704 * 109.47121 * 84.53838 * 17 8 6 19 19 O 1.20822 * 120.00160 * 0.02562 * 18 17 8 20 20 O 1.34227 * 119.99894 * 180.02562 * 18 17 8 21 21 C 1.45196 * 117.00009 * 180.02562 * 20 18 17 22 22 C 1.36162 * 108.68928 * 359.62385 * 5 4 3 23 23 C 1.37918 * 125.82847 * 89.99917 * 3 2 1 24 24 C 1.47357 * 126.77626 * 359.96015 * 23 3 2 25 25 O 1.21512 * 120.00248 * 0.02871 * 24 23 3 26 26 O 1.34753 * 119.99422 * 180.02562 * 24 23 3 27 27 C 1.45204 * 116.99882 * 179.97438 * 26 24 23 28 28 H 1.08995 * 109.47549 * 300.00376 * 1 2 3 29 29 H 1.09003 * 109.46864 * 60.00640 * 1 2 3 30 30 H 1.08996 * 109.47052 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47549 * 239.99624 * 2 1 3 32 32 H 1.09003 * 109.46864 * 119.99360 * 2 1 3 33 33 H 0.97000 * 119.99944 * 180.02562 * 12 11 9 34 34 H 1.08991 * 109.47247 * 204.54078 * 17 8 6 35 35 H 1.09008 * 109.47042 * 324.54153 * 17 8 6 36 36 H 1.08998 * 109.47461 * 59.99718 * 21 20 18 37 37 H 1.09000 * 109.47436 * 179.97438 * 21 20 18 38 38 H 1.08999 * 109.46768 * 299.99506 * 21 20 18 39 39 H 1.07999 * 126.69126 * 180.25899 * 22 5 4 40 40 H 1.08998 * 109.46882 * 59.99576 * 27 26 24 41 41 H 1.08990 * 109.47271 * 179.97438 * 27 26 24 42 42 H 1.09000 * 109.47018 * 300.00521 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2888 2.1590 -1.0824 5 6 2.7264 3.3802 -0.7124 6 6 3.1095 4.4631 -1.6237 7 8 3.3840 5.5632 -1.1804 8 7 3.1631 4.2392 -2.9517 9 6 2.9346 2.9827 -3.4435 10 1 3.3702 2.1240 -2.9543 11 6 2.1418 2.8117 -4.5726 12 7 1.3593 3.7855 -4.9795 13 14 2.1891 1.1974 -5.5114 14 1 3.1436 0.2697 -4.8529 15 1 0.8342 0.5894 -5.5192 16 1 2.6266 1.4494 -6.9078 17 6 3.4659 5.3408 -3.8687 18 6 4.9596 5.5112 -3.9733 19 8 5.6957 4.7865 -3.3465 20 8 5.4723 6.4681 -4.7627 21 6 6.9194 6.5741 -4.8153 22 6 2.7478 3.4424 0.6477 23 6 2.3013 2.1820 1.1182 24 6 2.1537 1.7669 2.5244 25 8 1.7582 0.6490 2.7896 26 8 2.4573 2.6272 3.5161 27 6 2.2874 2.1507 4.8772 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8058 3.6661 -5.7671 34 1 3.0559 5.1170 -4.8535 35 1 3.0208 6.2612 -3.4905 36 1 7.3394 5.6369 -5.1805 37 1 7.2003 7.3843 -5.4882 38 1 7.3050 6.7804 -3.8169 39 1 3.0462 4.2874 1.2504 40 1 2.9232 1.2803 5.0394 41 1 2.5665 2.9394 5.5758 42 1 1.2453 1.8743 5.0379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338525740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:55 Heat of formation + Delta-G solvation = -183.300245 kcal Electronic energy + Delta-G solvation = -30308.144426 eV Core-core repulsion = 25835.160300 eV Total energy + Delta-G solvation = -4472.984126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29529 -39.99743 -39.84328 -38.34891 -36.34645 -35.84862 -34.99932 -33.79211 -32.67454 -31.81982 -29.52822 -28.39106 -27.67720 -26.49939 -25.10741 -24.18199 -23.04097 -21.38063 -20.74043 -20.16007 -19.27594 -18.38031 -17.24046 -17.06170 -16.66488 -16.34875 -15.86699 -15.74069 -15.65387 -15.38887 -15.14021 -14.77853 -14.51905 -14.13588 -13.62093 -13.50785 -13.20499 -13.14361 -12.89775 -12.79785 -12.63003 -12.46030 -12.18242 -11.98820 -11.79621 -11.54914 -11.45069 -11.39034 -11.12154 -10.94067 -10.91311 -10.74145 -10.47315 -10.34188 -10.29722 -9.82415 -9.61541 -9.48327 -9.06522 -8.13469 -7.80551 -6.65552 -4.38293 1.39613 1.91370 2.75639 2.97832 3.00661 3.09961 3.13380 3.19067 3.22106 3.32648 3.92034 4.13816 4.37953 4.77296 4.85720 5.02038 5.07417 5.14391 5.26654 5.32959 5.40433 5.41074 5.45748 5.47913 5.55889 5.61612 5.84711 5.89448 5.96668 6.03762 6.12090 6.16751 6.29174 6.34813 6.50056 6.55967 6.65968 6.93929 7.26856 7.38692 7.48360 7.90784 8.11783 8.47941 8.78861 9.06005 9.50155 10.38845 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.004196 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.871333 B = 6671.184316 C = 8561.088490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C 0.084 3.916 4 O -0.103 6.103 5 C -0.013 4.013 6 C 0.554 3.446 7 O -0.576 6.576 8 N -0.407 5.407 9 C -0.332 4.332 10 H 0.100 0.900 11 C 0.050 3.950 12 N -0.856 5.856 13 Si 0.919 3.081 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.131 3.869 18 C 0.446 3.554 19 O -0.502 6.502 20 O -0.367 6.367 21 C 0.037 3.963 22 C -0.118 4.118 23 C -0.243 4.243 24 C 0.546 3.454 25 O -0.517 6.517 26 O -0.352 6.352 27 C 0.038 3.962 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.276 0.724 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.164 0.836 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -2.759 6.309 6.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C 0.026 3.974 4 O 0.005 5.995 5 C -0.065 4.065 6 C 0.344 3.656 7 O -0.462 6.462 8 N -0.124 5.124 9 C -0.459 4.459 10 H 0.117 0.883 11 C -0.158 4.158 12 N -0.491 5.491 13 Si 0.744 3.256 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.202 1.202 17 C 0.005 3.995 18 C 0.287 3.713 19 O -0.388 6.388 20 O -0.284 6.284 21 C -0.058 4.058 22 C -0.139 4.139 23 C -0.245 4.245 24 C 0.393 3.607 25 O -0.408 6.408 26 O -0.268 6.268 27 C -0.056 4.056 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.181 0.819 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.962 -2.768 6.301 6.949 hybrid contribution 0.259 -0.770 -0.213 0.839 sum 1.221 -3.538 6.087 7.146 Atomic orbital electron populations 1.21689 0.93322 1.02379 1.02718 1.20391 0.97037 0.86640 1.05000 1.23524 0.95551 0.94408 0.83887 1.84554 1.61275 1.21913 1.31738 1.22074 1.05997 0.84814 0.93635 1.16984 0.81462 0.84849 0.82309 1.90740 1.55619 1.22902 1.76931 1.42889 1.57707 1.08906 1.02890 1.19608 1.30093 0.83313 1.12930 0.88296 1.25540 0.93000 0.99090 0.98151 1.69860 1.21408 1.33462 1.24381 0.85975 0.78663 0.81540 0.79377 1.18742 1.20151 1.20176 1.20988 0.85409 0.93010 1.00047 1.25169 0.93975 0.76777 0.75346 1.90594 1.61658 1.43691 1.42873 1.86536 1.24314 1.53930 1.63639 1.23105 0.78237 1.02179 1.02260 1.21769 1.01703 0.97428 0.92973 1.19195 1.18075 0.97214 0.90062 1.20050 0.73183 0.82238 0.85202 1.90773 1.44273 1.21029 1.84684 1.86604 1.79473 1.44427 1.16300 1.23230 1.02206 1.01029 0.79117 0.92235 0.91905 0.91526 0.89431 0.87391 0.91362 0.84074 0.87823 0.92447 0.88829 0.92427 0.81891 0.92005 0.88208 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.53 16 2 C -0.05 -0.78 5.94 -27.88 -0.17 -0.94 16 3 C 0.08 1.52 6.67 -34.42 -0.23 1.29 16 4 O -0.10 -2.21 7.71 6.15 0.05 -2.16 16 5 C -0.01 -0.30 6.76 -36.94 -0.25 -0.55 16 6 C 0.55 13.90 7.41 -12.87 -0.10 13.81 16 7 O -0.58 -15.10 16.57 5.16 0.09 -15.02 16 8 N -0.41 -10.16 2.02 -117.60 -0.24 -10.40 16 9 C -0.33 -8.26 7.58 -15.02 -0.11 -8.37 16 10 H 0.10 2.49 6.54 -52.49 -0.34 2.15 16 11 C 0.05 1.19 4.98 -17.45 -0.09 1.10 16 12 N -0.86 -20.83 11.64 55.50 0.65 -20.18 16 13 Si 0.92 18.67 29.58 -169.99 -5.03 13.64 16 14 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 15 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 17 C 0.13 2.98 5.43 -5.19 -0.03 2.96 16 18 C 0.45 9.87 7.99 36.01 0.29 10.15 16 19 O -0.50 -12.38 16.06 -18.75 -0.30 -12.68 16 20 O -0.37 -6.87 10.56 -39.25 -0.41 -7.28 16 21 C 0.04 0.53 10.56 101.05 1.07 1.59 16 22 C -0.12 -2.35 10.45 -38.99 -0.41 -2.75 16 23 C -0.24 -4.43 6.16 -104.96 -0.65 -5.08 16 24 C 0.55 9.09 7.96 34.44 0.27 9.36 16 25 O -0.52 -8.71 14.63 -19.27 -0.28 -8.99 16 26 O -0.35 -5.21 10.43 -40.63 -0.42 -5.64 16 27 C 0.04 0.39 10.57 101.05 1.07 1.46 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.11 1.51 6.48 -51.93 -0.34 1.17 16 33 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 34 H 0.14 3.24 5.84 -51.93 -0.30 2.93 16 35 H 0.10 2.28 7.65 -51.92 -0.40 1.89 16 36 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 39 H 0.16 3.05 8.06 -52.49 -0.42 2.63 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -30.80 373.12 -4.41 -35.21 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.16 Total: 5.39 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 1.04 Total: 22.50 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.41 Total: -30.58 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -1.29 Total: -51.78 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.80 -4.41 -35.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338525740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.095 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds