Wall clock time and date at job start Tue Mar 31 2020 22:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46857 * 2 1 4 4 O 1.33500 * 125.82849 * 270.21871 * 3 2 1 5 5 C 1.34895 * 109.90734 * 180.18657 * 4 3 2 6 6 C 1.46635 * 125.65240 * 179.88012 * 5 4 3 7 7 O 1.21733 * 119.99679 * 173.84028 * 6 5 4 8 8 N 1.34779 * 120.00544 * 353.57164 * 6 5 4 9 9 C 1.36858 * 119.99720 * 356.26695 * 8 6 5 10 10 H 1.08002 * 119.99606 * 316.94810 * 9 8 6 11 11 C 1.39020 * 119.99954 * 136.94413 * 9 8 6 12 12 N 1.31386 * 120.00174 * 343.69160 * 11 9 8 13 13 Si 1.86805 * 120.00060 * 163.68675 * 11 9 8 14 14 H 1.48503 * 109.46840 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47082 * 120.00002 * 13 11 9 16 16 H 1.48492 * 109.47410 * 240.00299 * 13 11 9 17 17 C 1.46497 * 120.00477 * 176.26846 * 8 6 5 18 18 C 1.50704 * 109.47121 * 84.53838 * 17 8 6 19 19 O 1.20822 * 120.00160 * 0.02562 * 18 17 8 20 20 O 1.34227 * 119.99894 * 180.02562 * 18 17 8 21 21 C 1.45196 * 117.00009 * 180.02562 * 20 18 17 22 22 C 1.36162 * 108.68928 * 359.62385 * 5 4 3 23 23 C 1.37918 * 125.82847 * 89.99917 * 3 2 1 24 24 C 1.47357 * 126.77626 * 359.96015 * 23 3 2 25 25 O 1.21512 * 120.00248 * 0.02871 * 24 23 3 26 26 O 1.34753 * 119.99422 * 180.02562 * 24 23 3 27 27 C 1.45204 * 116.99882 * 179.97438 * 26 24 23 28 28 H 1.08995 * 109.47549 * 300.00376 * 1 2 3 29 29 H 1.09003 * 109.46864 * 60.00640 * 1 2 3 30 30 H 1.08996 * 109.47052 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47549 * 239.99624 * 2 1 3 32 32 H 1.09003 * 109.46864 * 119.99360 * 2 1 3 33 33 H 0.97000 * 119.99944 * 180.02562 * 12 11 9 34 34 H 1.08991 * 109.47247 * 204.54078 * 17 8 6 35 35 H 1.09008 * 109.47042 * 324.54153 * 17 8 6 36 36 H 1.08998 * 109.47461 * 59.99718 * 21 20 18 37 37 H 1.09000 * 109.47436 * 179.97438 * 21 20 18 38 38 H 1.08999 * 109.46768 * 299.99506 * 21 20 18 39 39 H 1.07999 * 126.69126 * 180.25899 * 22 5 4 40 40 H 1.08998 * 109.46882 * 59.99576 * 27 26 24 41 41 H 1.08990 * 109.47271 * 179.97438 * 27 26 24 42 42 H 1.09000 * 109.47018 * 300.00521 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2888 2.1590 -1.0824 5 6 2.7264 3.3802 -0.7124 6 6 3.1095 4.4631 -1.6237 7 8 3.3840 5.5632 -1.1804 8 7 3.1631 4.2392 -2.9517 9 6 2.9346 2.9827 -3.4435 10 1 3.3702 2.1240 -2.9543 11 6 2.1418 2.8117 -4.5726 12 7 1.3593 3.7855 -4.9795 13 14 2.1891 1.1974 -5.5114 14 1 3.1436 0.2697 -4.8529 15 1 0.8342 0.5894 -5.5192 16 1 2.6266 1.4494 -6.9078 17 6 3.4659 5.3408 -3.8687 18 6 4.9596 5.5112 -3.9733 19 8 5.6957 4.7865 -3.3465 20 8 5.4723 6.4681 -4.7627 21 6 6.9194 6.5741 -4.8153 22 6 2.7478 3.4424 0.6477 23 6 2.3013 2.1820 1.1182 24 6 2.1537 1.7669 2.5244 25 8 1.7582 0.6490 2.7896 26 8 2.4573 2.6272 3.5161 27 6 2.2874 2.1507 4.8772 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8058 3.6661 -5.7671 34 1 3.0559 5.1170 -4.8535 35 1 3.0208 6.2612 -3.4905 36 1 7.3394 5.6369 -5.1805 37 1 7.2003 7.3843 -5.4882 38 1 7.3050 6.7804 -3.8169 39 1 3.0462 4.2874 1.2504 40 1 2.9232 1.2803 5.0394 41 1 2.5665 2.9394 5.5758 42 1 1.2453 1.8743 5.0379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338525740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:54 Heat of formation + Delta-G solvation = -200.567336 kcal Electronic energy + Delta-G solvation = -30308.893183 eV Core-core repulsion = 25835.160300 eV Total energy + Delta-G solvation = -4473.732884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.84962 -41.59791 -41.19718 -40.14667 -37.56004 -37.53960 -36.83713 -35.05738 -34.18028 -33.67534 -31.15535 -29.82147 -28.69043 -27.93847 -26.90436 -25.43738 -24.51104 -22.80068 -22.31582 -21.80259 -20.86044 -20.01946 -18.82301 -18.66450 -18.14977 -17.68828 -17.44025 -17.23002 -17.08859 -16.89950 -16.73853 -16.53760 -16.11733 -15.35962 -15.27786 -15.00603 -14.48978 -14.44684 -14.30604 -14.22964 -14.12841 -13.98006 -13.49782 -13.36477 -13.15759 -12.95807 -12.94722 -12.87972 -12.67134 -12.53849 -12.11949 -12.07644 -11.79590 -11.79035 -11.64019 -11.57128 -11.32736 -11.14554 -10.91655 -9.83466 -9.54250 -8.47194 -6.27548 -0.04543 0.30926 1.22087 1.39444 1.44947 1.49518 1.58098 1.62578 1.79072 1.89350 2.21881 2.36295 2.69293 3.01605 3.42983 3.69377 3.78963 4.01388 4.10512 4.23787 4.26404 4.30586 4.32181 4.32399 4.36722 4.38089 4.49714 4.51955 4.65363 4.71909 4.72819 4.87259 4.94759 4.96311 5.15035 5.21656 5.31228 5.33120 5.39939 5.63370 5.85479 6.25261 6.65906 6.77493 6.92577 7.19167 7.63943 8.58522 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.004196 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.871333 B = 6671.184316 C = 8561.088490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C 0.093 3.907 4 O -0.120 6.120 5 C -0.054 4.054 6 C 0.540 3.460 7 O -0.604 6.604 8 N -0.416 5.416 9 C -0.350 4.350 10 H 0.090 0.910 11 C 0.020 3.980 12 N -0.878 5.878 13 Si 0.979 3.021 14 H -0.263 1.263 15 H -0.268 1.268 16 H -0.270 1.270 17 C 0.129 3.871 18 C 0.452 3.548 19 O -0.533 6.533 20 O -0.364 6.364 21 C 0.028 3.972 22 C -0.101 4.101 23 C -0.252 4.252 24 C 0.551 3.449 25 O -0.519 6.519 26 O -0.361 6.361 27 C 0.030 3.970 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.283 0.717 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.140 0.860 38 H 0.055 0.945 39 H 0.170 0.830 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 -4.150 6.598 7.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C 0.036 3.964 4 O -0.012 6.012 5 C -0.105 4.105 6 C 0.331 3.669 7 O -0.492 6.492 8 N -0.132 5.132 9 C -0.477 4.477 10 H 0.107 0.893 11 C -0.186 4.186 12 N -0.514 5.514 13 Si 0.801 3.199 14 H -0.187 1.187 15 H -0.193 1.193 16 H -0.195 1.195 17 C 0.004 3.996 18 C 0.295 3.705 19 O -0.422 6.422 20 O -0.280 6.280 21 C -0.065 4.065 22 C -0.122 4.122 23 C -0.254 4.254 24 C 0.398 3.602 25 O -0.411 6.411 26 O -0.277 6.277 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.158 0.842 38 H 0.074 0.926 39 H 0.188 0.812 40 H 0.086 0.914 41 H 0.149 0.851 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.863 -4.134 6.581 7.820 hybrid contribution 0.315 -0.300 -0.211 0.483 sum 1.178 -4.434 6.370 7.851 Atomic orbital electron populations 1.21682 0.92036 1.04122 1.01813 1.20643 0.97949 0.84236 1.06199 1.24343 0.93493 0.95434 0.83133 1.84494 1.61860 1.21785 1.33096 1.21773 1.09318 0.85425 0.94001 1.17375 0.81331 0.85388 0.82798 1.90681 1.57044 1.24025 1.77461 1.43068 1.57622 1.09345 1.03161 1.19659 1.31114 0.83189 1.13748 0.89253 1.26244 0.92156 1.02057 0.98161 1.69913 1.21661 1.34976 1.24805 0.85094 0.78866 0.77866 0.78087 1.18725 1.19257 1.19533 1.20966 0.86401 0.92679 0.99580 1.24881 0.93537 0.76896 0.75209 1.90571 1.62239 1.45074 1.44290 1.86501 1.27095 1.52216 1.62198 1.23539 0.75381 1.04111 1.03471 1.21931 0.99927 0.98240 0.92125 1.19390 1.18090 0.96439 0.91501 1.19717 0.73255 0.82338 0.84938 1.90762 1.44515 1.21076 1.84733 1.86582 1.79000 1.44331 1.17821 1.23628 1.02975 1.02634 0.77060 0.92943 0.92989 0.88461 0.87919 0.86378 0.90741 0.84330 0.87812 0.92251 0.84222 0.92601 0.81237 0.91358 0.85086 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.89 71.98 0.71 -2.68 16 2 C -0.05 -1.46 5.94 29.85 0.18 -1.28 16 3 C 0.09 3.35 6.67 25.61 0.17 3.52 16 4 O -0.12 -5.24 7.71 -0.91 -0.01 -5.25 16 5 C -0.05 -2.52 6.76 23.98 0.16 -2.36 16 6 C 0.54 28.32 7.41 86.43 0.64 28.96 16 7 O -0.60 -33.09 16.57 -4.45 -0.07 -33.17 16 8 N -0.42 -21.55 2.02 -644.17 -1.30 -22.85 16 9 C -0.35 -17.87 7.58 84.10 0.64 -17.23 16 10 H 0.09 4.65 6.54 -2.91 -0.02 4.63 16 11 C 0.02 0.94 4.98 84.95 0.42 1.36 16 12 N -0.88 -43.09 11.64 21.68 0.25 -42.84 16 13 Si 0.98 37.80 29.58 68.60 2.03 39.83 16 14 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 15 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 16 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 17 C 0.13 6.09 5.43 85.63 0.46 6.55 16 18 C 0.45 20.43 7.99 71.24 0.57 21.00 16 19 O -0.53 -26.96 16.06 21.98 0.35 -26.61 16 20 O -0.36 -13.47 10.56 -51.39 -0.54 -14.01 16 21 C 0.03 0.77 10.56 113.37 1.20 1.97 16 22 C -0.10 -4.12 10.45 22.65 0.24 -3.88 16 23 C -0.25 -9.11 6.16 -20.09 -0.12 -9.23 16 24 C 0.55 17.62 7.96 70.22 0.56 18.17 16 25 O -0.52 -16.52 14.63 19.80 0.29 -16.23 16 26 O -0.36 -10.15 10.43 -56.63 -0.59 -10.74 16 27 C 0.03 0.54 10.57 113.37 1.20 1.74 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.12 3.03 6.48 -2.39 -0.02 3.01 16 33 H 0.28 12.79 8.31 -92.71 -0.77 12.02 16 34 H 0.14 6.56 5.84 -2.39 -0.01 6.54 16 35 H 0.10 4.79 7.65 -2.38 -0.02 4.78 16 36 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 37 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 39 H 0.17 6.49 8.06 -2.91 -0.02 6.47 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -67.92 373.12 8.50 -59.42 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 1.07 Total: 25.83 kcal Atomic # 6 Polarization: 39.59 SS G_CDS: 7.02 Total: 46.61 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -1.05 Total: -65.70 kcal Atomic # 8 Polarization: -105.43 SS G_CDS: -0.57 Total: -106.00 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -67.92 8.50 -59.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338525740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.144 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds