Wall clock time and date at job start Tue Mar 31 2020 22:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47201 * 199.79696 * 3 2 1 5 5 C 1.36911 * 120.00374 * 97.66062 * 4 3 2 6 6 H 1.07996 * 119.99980 * 156.51953 * 5 4 3 7 7 C 1.39023 * 119.99684 * 336.79322 * 5 4 3 8 8 N 1.31380 * 120.00215 * 356.30682 * 7 5 4 9 9 Si 1.86796 * 119.99863 * 176.30191 * 7 5 4 10 10 H 1.48498 * 109.47100 * 60.00273 * 9 7 5 11 11 H 1.48497 * 109.47471 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47067 * 300.00430 * 9 7 5 13 13 C 1.34773 * 119.99817 * 277.66617 * 4 3 2 14 14 O 1.21616 * 120.00179 * 175.65319 * 13 4 3 15 15 C 1.47612 * 119.99996 * 355.65235 * 13 4 3 16 16 C 1.40980 * 126.25667 * 187.68398 * 15 13 4 17 17 C 1.37054 * 105.47591 * 179.87980 * 16 15 13 18 18 C 1.47129 * 126.65159 * 180.09145 * 17 16 15 19 19 N 1.34779 * 120.00169 * 353.61902 * 18 17 16 20 20 O 1.21632 * 120.00382 * 173.61482 * 18 17 16 21 21 N 1.37027 * 106.69112 * 0.37305 * 17 16 15 22 22 C 1.39942 * 125.07503 * 179.75540 * 21 17 16 23 23 C 1.38904 * 120.07519 * 312.21711 * 22 21 17 24 24 C 1.38098 * 119.92880 * 179.74855 * 23 22 21 25 25 C 1.38295 * 120.07308 * 0.55448 * 24 23 22 26 26 C 1.38289 * 120.14265 * 359.70182 * 25 24 23 27 27 C 1.38106 * 120.07468 * 0.02562 * 26 25 24 28 28 N 1.28452 * 109.84330 * 359.75432 * 21 17 16 29 29 H 1.08995 * 109.47364 * 79.79832 * 3 2 1 30 30 H 1.09005 * 109.47194 * 319.79113 * 3 2 1 31 31 H 0.97002 * 119.99999 * 179.97438 * 8 7 5 32 32 H 1.07996 * 127.25776 * 359.97438 * 16 15 13 33 33 H 0.96996 * 119.99976 * 4.98808 * 19 18 17 34 34 H 0.97002 * 119.99814 * 184.99670 * 19 18 17 35 35 H 1.08003 * 120.03419 * 0.02562 * 23 22 21 36 36 H 1.08000 * 119.96639 * 180.27903 * 24 23 22 37 37 H 1.07992 * 119.92892 * 179.71978 * 25 24 23 38 38 H 1.08004 * 119.96379 * 180.02562 * 26 25 24 39 39 H 1.07997 * 120.03390 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3005 0.4678 5 6 3.4729 1.4604 1.7742 6 1 4.1633 2.2456 2.0446 7 6 2.9716 0.6084 2.7517 8 7 2.0808 -0.3036 2.4342 9 14 3.5647 0.7601 4.5164 10 1 3.2511 2.1181 5.0290 11 1 2.8828 -0.2565 5.3571 12 1 5.0324 0.5391 4.5661 13 6 3.1731 2.3388 -0.3878 14 8 3.5024 3.4373 0.0171 15 6 2.8582 2.1429 -1.8166 16 6 3.0395 3.0874 -2.8475 17 6 2.6151 2.4650 -3.9924 18 6 2.6036 3.0344 -5.3490 19 7 2.9192 4.3310 -5.5384 20 8 2.3092 2.3352 -6.2997 21 7 2.1977 1.2119 -3.6277 22 6 1.6826 0.2493 -4.5031 23 6 0.6967 0.5967 -5.4179 24 6 0.1943 -0.3544 -6.2839 25 6 0.6634 -1.6544 -6.2334 26 6 1.6410 -2.0049 -5.3203 27 6 2.1518 -1.0572 -4.4552 28 7 2.3499 1.0528 -2.3621 29 1 2.9715 -0.1812 -1.0114 30 1 2.9717 -0.7840 0.6635 31 1 1.7313 -0.8983 3.1162 32 1 3.4316 4.0893 -2.7547 33 1 3.2238 4.8700 -4.7917 34 1 2.8417 4.7251 -6.4213 35 1 0.3268 1.6108 -5.4548 36 1 -0.5690 -0.0838 -6.9984 37 1 0.2656 -2.3973 -6.9087 38 1 2.0056 -3.0209 -5.2837 39 1 2.9156 -1.3316 -3.7427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342449816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:29 Heat of formation + Delta-G solvation = 98.577491 kcal Electronic energy + Delta-G solvation = -28972.082442 eV Core-core repulsion = 24883.215874 eV Total energy + Delta-G solvation = -4088.866569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.74579 -39.34478 -39.04669 -38.41167 -35.70698 -34.31776 -34.16878 -33.27438 -31.91804 -31.24683 -30.54759 -29.29410 -27.37984 -25.50644 -24.15410 -23.23610 -22.88559 -21.68833 -20.38600 -19.35448 -18.50032 -17.84268 -17.25098 -16.83223 -16.47360 -16.32605 -16.02279 -15.53407 -14.96786 -14.73655 -14.65406 -14.27759 -14.11115 -13.95489 -13.53551 -13.44145 -13.39423 -12.96966 -12.79379 -12.64519 -11.86543 -11.75284 -11.52839 -11.30743 -11.24066 -11.15827 -10.86249 -10.50773 -10.49188 -10.44751 -10.10718 -9.95161 -9.60782 -9.27192 -9.15313 -8.98916 -8.91373 -8.40365 -8.07102 -6.51678 -4.11626 0.74737 1.30659 1.49990 2.15345 2.32663 3.07926 3.15586 3.19326 3.21201 3.30835 3.64135 3.74861 4.01671 4.13586 4.31481 4.49561 4.61664 4.77997 4.81563 4.94754 4.96605 4.99166 5.24048 5.27090 5.42128 5.50742 5.53628 5.68898 5.77049 5.88242 6.19741 6.21407 6.33854 6.37738 6.47963 6.52798 6.64001 6.77084 6.99467 7.05770 7.36960 7.83628 7.94250 8.04883 8.25287 8.90071 8.94432 9.09848 9.65465 10.49333 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.003900 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.852393 B = 7177.156092 C = 8643.859319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.267 3.733 3 C 0.213 3.787 4 N -0.418 5.418 5 C -0.303 4.303 6 H 0.110 0.890 7 C 0.033 3.967 8 N -0.878 5.878 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.522 3.478 14 O -0.567 6.567 15 C 0.017 3.983 16 C -0.125 4.125 17 C -0.052 4.052 18 C 0.598 3.402 19 N -0.839 5.839 20 O -0.533 6.533 21 N -0.214 5.214 22 C 0.126 3.874 23 C -0.065 4.065 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.094 4.094 28 N -0.235 5.235 29 H 0.097 0.903 30 H 0.138 0.862 31 H 0.277 0.723 32 H 0.171 0.829 33 H 0.407 0.593 34 H 0.409 0.591 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -0.029 -16.667 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.051 4.051 3 C 0.086 3.914 4 N -0.136 5.136 5 C -0.431 4.431 6 H 0.128 0.872 7 C -0.171 4.171 8 N -0.517 5.517 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.309 3.691 14 O -0.449 6.449 15 C -0.141 4.141 16 C -0.154 4.154 17 C -0.176 4.176 18 C 0.382 3.618 19 N -0.404 5.404 20 O -0.410 6.410 21 N 0.003 4.997 22 C 0.037 3.963 23 C -0.085 4.085 24 C -0.130 4.130 25 C -0.127 4.127 26 C -0.133 4.133 27 C -0.113 4.113 28 N -0.071 5.071 29 H 0.114 0.886 30 H 0.155 0.845 31 H 0.088 0.912 32 H 0.188 0.812 33 H 0.237 0.763 34 H 0.241 0.759 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.115 -1.345 -16.623 16.678 hybrid contribution 0.897 1.230 0.828 1.732 sum 1.011 -0.115 -15.795 15.828 Atomic orbital electron populations 1.80854 1.13720 1.08924 1.13397 1.29041 0.95095 0.92095 0.88887 1.19155 0.81936 0.89640 1.00659 1.43448 1.53851 1.06955 1.09364 1.19777 1.25135 1.17250 0.80934 0.87245 1.25468 0.95002 0.95804 1.00837 1.69768 1.27235 1.19522 1.35224 0.85783 0.78806 0.78409 0.80524 1.19605 1.20797 1.19500 1.16694 0.85329 0.84815 0.82251 1.90655 1.53624 1.23746 1.76861 1.22548 1.03917 0.90794 0.96874 1.21936 1.03189 1.01073 0.89239 1.20965 1.12081 0.88906 0.95666 1.16874 0.76438 0.82310 0.86209 1.43473 1.70411 1.11028 1.15460 1.90898 1.48575 1.59306 1.42217 1.42869 1.43030 1.09320 1.04524 1.17429 0.97686 0.88116 0.93038 1.20914 0.93430 1.00021 0.94136 1.20929 1.00446 0.92831 0.98827 1.21262 0.96712 0.96347 0.98389 1.20998 0.97400 0.99301 0.95615 1.21071 0.99930 0.91095 0.99239 1.74147 1.17544 1.24785 0.90609 0.88576 0.84511 0.91243 0.81186 0.76341 0.75874 0.85706 0.85273 0.85511 0.84997 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.53 18.54 42.16 0.78 -11.75 16 2 C 0.27 6.43 12.65 -20.76 -0.26 6.17 16 3 C 0.21 4.68 4.75 -6.83 -0.03 4.65 16 4 N -0.42 -10.16 2.61 -119.09 -0.31 -10.47 16 5 C -0.30 -7.74 9.27 -14.99 -0.14 -7.88 16 6 H 0.11 2.84 7.44 -52.49 -0.39 2.45 16 7 C 0.03 0.81 5.24 -17.45 -0.09 0.72 16 8 N -0.88 -22.02 8.92 55.50 0.49 -21.52 16 9 Si 0.94 19.47 29.55 -169.99 -5.02 14.44 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 C 0.52 12.40 7.53 -12.44 -0.09 12.31 16 14 O -0.57 -14.70 16.65 5.26 0.09 -14.61 16 15 C 0.02 0.34 6.74 -82.90 -0.56 -0.22 16 16 C -0.13 -2.01 10.23 -38.97 -0.40 -2.41 16 17 C -0.05 -0.80 6.72 -82.37 -0.55 -1.35 16 18 C 0.60 7.73 7.69 -12.65 -0.10 7.64 16 19 N -0.84 -6.85 8.86 30.36 0.27 -6.58 16 20 O -0.53 -8.07 14.09 5.25 0.07 -8.00 16 21 N -0.21 -3.65 3.43 -7.29 -0.03 -3.67 16 22 C 0.13 1.98 5.67 -83.66 -0.47 1.51 16 23 C -0.06 -0.93 7.33 -39.39 -0.29 -1.22 16 24 C -0.11 -1.30 10.04 -39.61 -0.40 -1.70 16 25 C -0.11 -1.14 10.04 -39.54 -0.40 -1.53 16 26 C -0.11 -1.28 10.04 -39.61 -0.40 -1.68 16 27 C -0.09 -1.29 9.83 -39.39 -0.39 -1.68 16 28 N -0.24 -4.50 7.50 33.33 0.25 -4.25 16 29 H 0.10 1.88 5.47 -51.93 -0.28 1.60 16 30 H 0.14 3.03 6.16 -51.93 -0.32 2.71 16 31 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.17 2.20 7.54 -52.49 -0.40 1.80 16 33 H 0.41 2.54 7.82 -40.82 -0.32 2.22 16 34 H 0.41 2.46 8.93 -40.82 -0.36 2.10 16 35 H 0.13 1.80 7.04 -52.48 -0.37 1.43 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -33.68 346.19 -6.02 -39.70 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -3.27 Total: 8.19 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: -4.57 Total: 13.31 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 1.46 Total: -58.25 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.16 Total: -22.61 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.68 -6.02 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342449816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.278 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds