Wall clock time and date at job start Tue Mar 31 2020 22:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47201 * 199.79696 * 3 2 1 5 5 C 1.36911 * 120.00374 * 97.66062 * 4 3 2 6 6 H 1.07996 * 119.99980 * 156.51953 * 5 4 3 7 7 C 1.39023 * 119.99684 * 336.79322 * 5 4 3 8 8 N 1.31380 * 120.00215 * 356.30682 * 7 5 4 9 9 Si 1.86796 * 119.99863 * 176.30191 * 7 5 4 10 10 H 1.48498 * 109.47100 * 60.00273 * 9 7 5 11 11 H 1.48497 * 109.47471 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47067 * 300.00430 * 9 7 5 13 13 C 1.34773 * 119.99817 * 277.66617 * 4 3 2 14 14 O 1.21616 * 120.00179 * 175.65319 * 13 4 3 15 15 C 1.47612 * 119.99996 * 355.65235 * 13 4 3 16 16 C 1.40980 * 126.25667 * 187.68398 * 15 13 4 17 17 C 1.37054 * 105.47591 * 179.87980 * 16 15 13 18 18 C 1.47129 * 126.65159 * 180.09145 * 17 16 15 19 19 N 1.34779 * 120.00169 * 353.61902 * 18 17 16 20 20 O 1.21632 * 120.00382 * 173.61482 * 18 17 16 21 21 N 1.37027 * 106.69112 * 0.37305 * 17 16 15 22 22 C 1.39942 * 125.07503 * 179.75540 * 21 17 16 23 23 C 1.38904 * 120.07519 * 312.21711 * 22 21 17 24 24 C 1.38098 * 119.92880 * 179.74855 * 23 22 21 25 25 C 1.38295 * 120.07308 * 0.55448 * 24 23 22 26 26 C 1.38289 * 120.14265 * 359.70182 * 25 24 23 27 27 C 1.38106 * 120.07468 * 0.02562 * 26 25 24 28 28 N 1.28452 * 109.84330 * 359.75432 * 21 17 16 29 29 H 1.08995 * 109.47364 * 79.79832 * 3 2 1 30 30 H 1.09005 * 109.47194 * 319.79113 * 3 2 1 31 31 H 0.97002 * 119.99999 * 179.97438 * 8 7 5 32 32 H 1.07996 * 127.25776 * 359.97438 * 16 15 13 33 33 H 0.96996 * 119.99976 * 4.98808 * 19 18 17 34 34 H 0.97002 * 119.99814 * 184.99670 * 19 18 17 35 35 H 1.08003 * 120.03419 * 0.02562 * 23 22 21 36 36 H 1.08000 * 119.96639 * 180.27903 * 24 23 22 37 37 H 1.07992 * 119.92892 * 179.71978 * 25 24 23 38 38 H 1.08004 * 119.96379 * 180.02562 * 26 25 24 39 39 H 1.07997 * 120.03390 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3005 0.4678 5 6 3.4729 1.4604 1.7742 6 1 4.1633 2.2456 2.0446 7 6 2.9716 0.6084 2.7517 8 7 2.0808 -0.3036 2.4342 9 14 3.5647 0.7601 4.5164 10 1 3.2511 2.1181 5.0290 11 1 2.8828 -0.2565 5.3571 12 1 5.0324 0.5391 4.5661 13 6 3.1731 2.3388 -0.3878 14 8 3.5024 3.4373 0.0171 15 6 2.8582 2.1429 -1.8166 16 6 3.0395 3.0874 -2.8475 17 6 2.6151 2.4650 -3.9924 18 6 2.6036 3.0344 -5.3490 19 7 2.9192 4.3310 -5.5384 20 8 2.3092 2.3352 -6.2997 21 7 2.1977 1.2119 -3.6277 22 6 1.6826 0.2493 -4.5031 23 6 0.6967 0.5967 -5.4179 24 6 0.1943 -0.3544 -6.2839 25 6 0.6634 -1.6544 -6.2334 26 6 1.6410 -2.0049 -5.3203 27 6 2.1518 -1.0572 -4.4552 28 7 2.3499 1.0528 -2.3621 29 1 2.9715 -0.1812 -1.0114 30 1 2.9717 -0.7840 0.6635 31 1 1.7313 -0.8983 3.1162 32 1 3.4316 4.0893 -2.7547 33 1 3.2238 4.8700 -4.7917 34 1 2.8417 4.7251 -6.4213 35 1 0.3268 1.6108 -5.4548 36 1 -0.5690 -0.0838 -6.9984 37 1 0.2656 -2.3973 -6.9087 38 1 2.0056 -3.0209 -5.2837 39 1 2.9156 -1.3316 -3.7427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342449816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:29 Heat of formation + Delta-G solvation = 75.377607 kcal Electronic energy + Delta-G solvation = -28973.088465 eV Core-core repulsion = 24883.215874 eV Total energy + Delta-G solvation = -4089.872591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.06488 -40.67010 -40.11644 -39.86083 -37.62370 -36.21420 -35.21055 -34.47975 -33.68297 -32.33649 -31.69916 -30.49565 -29.20397 -27.24077 -25.37870 -24.61769 -23.87639 -22.90304 -21.62980 -20.71210 -19.82162 -19.61952 -18.59549 -18.15288 -17.74924 -17.45826 -17.27117 -16.93911 -16.59004 -15.92164 -15.83281 -15.71874 -15.48561 -15.20370 -15.04242 -14.77627 -14.68510 -14.47011 -14.36855 -13.80735 -13.66236 -13.42192 -13.14521 -12.91849 -12.62943 -12.48795 -12.45066 -12.15948 -12.12531 -11.78305 -11.48972 -11.13432 -10.91921 -10.81976 -10.75402 -10.43951 -9.99380 -9.94414 -9.52222 -8.39118 -6.07828 -0.36267 0.35105 0.42955 0.64196 1.13332 1.47755 1.50910 1.58295 1.88585 1.99295 2.21990 2.29092 2.37058 2.46486 2.67932 2.97007 3.06202 3.40057 3.63100 3.68824 3.82409 3.87224 3.92184 4.17664 4.19017 4.40374 4.45201 4.46653 4.53443 4.72411 4.95810 4.97788 5.08043 5.26409 5.33315 5.41365 5.46488 5.59666 5.76079 5.93330 6.00608 6.19914 6.32084 6.67912 7.00150 7.01340 7.12491 7.22404 7.78278 8.60178 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.003900 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.852393 B = 7177.156092 C = 8643.859319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.278 3.722 3 C 0.223 3.777 4 N -0.432 5.432 5 C -0.333 4.333 6 H 0.096 0.904 7 C 0.002 3.998 8 N -0.897 5.897 9 Si 1.000 3.000 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.256 1.256 13 C 0.521 3.479 14 O -0.597 6.597 15 C -0.016 4.016 16 C -0.120 4.120 17 C -0.046 4.046 18 C 0.599 3.401 19 N -0.811 5.811 20 O -0.555 6.555 21 N -0.208 5.208 22 C 0.088 3.912 23 C -0.080 4.080 24 C -0.114 4.114 25 C -0.098 4.098 26 C -0.112 4.112 27 C -0.111 4.111 28 N -0.249 5.249 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.277 0.723 32 H 0.199 0.801 33 H 0.419 0.581 34 H 0.424 0.576 35 H 0.116 0.884 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -0.660 -18.697 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C -0.039 4.039 3 C 0.096 3.904 4 N -0.150 5.150 5 C -0.461 4.461 6 H 0.114 0.886 7 C -0.200 4.200 8 N -0.536 5.536 9 Si 0.823 3.177 10 H -0.204 1.204 11 H -0.203 1.203 12 H -0.180 1.180 13 C 0.309 3.691 14 O -0.481 6.481 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.171 4.171 18 C 0.381 3.619 19 N -0.377 5.377 20 O -0.434 6.434 21 N 0.007 4.993 22 C -0.001 4.001 23 C -0.100 4.100 24 C -0.132 4.132 25 C -0.116 4.116 26 C -0.130 4.130 27 C -0.131 4.131 28 N -0.086 5.086 29 H 0.137 0.863 30 H 0.153 0.847 31 H 0.088 0.912 32 H 0.216 0.784 33 H 0.251 0.749 34 H 0.259 0.741 35 H 0.134 0.866 36 H 0.174 0.826 37 H 0.183 0.817 38 H 0.180 0.820 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.136 -1.952 -18.667 18.769 hybrid contribution 0.838 1.410 1.245 2.059 sum 0.974 -0.542 -17.422 17.458 Atomic orbital electron populations 1.80831 1.14636 1.09978 1.14636 1.29449 0.95496 0.91105 0.87836 1.19219 0.80639 0.88714 1.01779 1.43593 1.54288 1.07814 1.09351 1.19840 1.26223 1.17902 0.82112 0.88580 1.26181 0.94734 0.95052 1.03995 1.69858 1.27771 1.19856 1.36138 0.84872 0.79092 0.77759 0.75964 1.20438 1.20265 1.18031 1.17156 0.83996 0.84254 0.83662 1.90604 1.54692 1.24779 1.78055 1.22124 1.06668 0.92795 0.95721 1.22213 1.02819 1.01722 0.88127 1.21414 1.10678 0.88245 0.96767 1.16679 0.76907 0.83496 0.84798 1.43267 1.68287 1.09295 1.16823 1.90889 1.49948 1.60251 1.42273 1.43083 1.41950 1.10257 1.03986 1.17845 0.99510 0.88729 0.93986 1.21012 0.93744 1.00409 0.94850 1.21331 1.00579 0.92916 0.98397 1.21746 0.95378 0.96560 0.97906 1.21418 0.96950 1.00085 0.94581 1.21273 1.00499 0.91070 1.00210 1.73973 1.17829 1.24889 0.91935 0.86300 0.84711 0.91230 0.78444 0.74879 0.74112 0.86624 0.82642 0.81651 0.81974 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.15 18.54 20.01 0.37 -26.78 16 2 C 0.28 13.70 12.65 89.44 1.13 14.83 16 3 C 0.22 10.04 4.75 84.57 0.40 10.44 16 4 N -0.43 -21.67 2.61 -648.95 -1.69 -23.36 16 5 C -0.33 -17.51 9.27 84.09 0.78 -16.73 16 6 H 0.10 5.18 7.44 -2.91 -0.02 5.16 16 7 C 0.00 0.11 5.24 84.95 0.44 0.56 16 8 N -0.90 -45.52 8.92 21.68 0.19 -45.33 16 9 Si 1.00 40.12 29.55 68.60 2.03 42.15 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 13 C 0.52 25.52 7.53 86.72 0.65 26.17 16 14 O -0.60 -31.93 16.65 -4.08 -0.07 -32.00 16 15 C -0.02 -0.67 6.74 42.26 0.28 -0.38 16 16 C -0.12 -3.82 10.23 22.66 0.23 -3.58 16 17 C -0.05 -1.39 6.72 40.39 0.27 -1.12 16 18 C 0.60 14.66 7.69 86.58 0.67 15.32 16 19 N -0.81 -11.37 8.86 -176.09 -1.56 -12.93 16 20 O -0.56 -16.13 14.09 -4.13 -0.06 -16.19 16 21 N -0.21 -7.15 3.43 -176.98 -0.61 -7.76 16 22 C 0.09 2.73 5.67 38.16 0.22 2.94 16 23 C -0.08 -2.22 7.33 22.40 0.16 -2.06 16 24 C -0.11 -2.37 10.04 22.25 0.22 -2.15 16 25 C -0.10 -1.70 10.04 22.30 0.22 -1.48 16 26 C -0.11 -2.22 10.04 22.25 0.22 -1.99 16 27 C -0.11 -2.98 9.83 22.40 0.22 -2.76 16 28 N -0.25 -9.71 7.50 -48.45 -0.36 -10.07 16 29 H 0.12 4.78 5.47 -2.39 -0.01 4.76 16 30 H 0.14 6.12 6.16 -2.38 -0.01 6.10 16 31 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 32 H 0.20 4.86 7.54 -2.91 -0.02 4.84 16 33 H 0.42 4.14 7.82 -92.71 -0.73 3.41 16 34 H 0.42 3.95 8.93 -92.71 -0.83 3.13 16 35 H 0.12 3.32 7.04 -2.91 -0.02 3.30 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -75.20 346.19 3.99 -71.20 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.39 Total: 23.06 kcal Atomic # 6 Polarization: 31.87 SS G_CDS: 6.14 Total: 38.01 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -3.66 Total: -126.23 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.13 Total: -48.19 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -75.20 3.99 -71.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342449816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.582 kcal (2) G-P(sol) polarization free energy of solvation -75.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds